Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aegilops_20tauschii_20subsp._20tauschii_20[refseq_20GCF_5F001957025. 1_202017-01-19] 68,538 sequences; 4,327,321,625 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq16495 105 1e-17 seq54907 89.7 1e-12 >seq16495 Length=532983 Score = 105 bits (116), Expect = 1e-17 Identities = 133/183 (73%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 192354 GATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCT 192413 |||||| ||||||| | ||| || |||| || | || || ||||||||||| | | Sbjct 85388 GATATTGTAATCAGCAAGTGTCCGCCCATCCTCGAGCTGCTTGCCAGCAAAGATGAGCCG 85329 Query 192414 CTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGA 192473 ||| ||||| ||||| ||||| || ||||||||||| || || |||||| || | Sbjct 85328 CTGCTGATCCGGTGGGATTCCCTCCTTATCTTGTATCTTTGCGTTGACATTATCGATTGT 85269 Query 192474 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTG 192533 ||| ||||| || || || | || ||||| || ||||| | || || | ||| ||||| Sbjct 85268 ATCAGACGACTCAACCTCAACTGTGATGGTCTTGCCAGTGAGGGTCTTCACAAAGATCTG 85209 Query 192534 CAT 192536 ||| Sbjct 85208 CAT 85206 >seq54907 Length=1337563 Score = 89.7 bits (98), Expect = 1e-12 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 192310 CCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGAT 192369 ||||||| || |||| || | || | |||| ||| || ||||| ||||||| Sbjct 281714 CCACCTCGGAGGCGTAGGACCAGGTGAAGGGTAGACTCCTTCTGAATATTGTAATCAGCC 281773 Query 192370 AATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGT 192429 || || | |||| || | || || || |||||||| | ||||| || ||||| | Sbjct 281774 AAAGTGTGCCCATCCTCGAGCTGCTTTCCGGCAAAGATGAGCCTCTGCTGGTCAGGCAGG 281833 Query 192430 ATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACT 192489 || ||||| ||||| || || || || |||||| || | || || || ||| Sbjct 281834 ATACCTTCCTTATCCTGGATCTTGGCCTTCACATTATCAATGGTGTCGGAGCTCTCCACT 281893 Query 192490 TCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || ||||| ||||| || ||||||| || || | |||||||||||| Sbjct 281894 TCAAGAGTGATGGTCTTTCCAGTTAGCGTCTTGACAAATATCTGCAT 281940 Score = 84.2 bits (92), Expect = 4e-11 Identities = 145/210 (69%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 192328 ACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGATAATGTTCGTTCATCATCC 192387 || || || | ||||| |||||| |||||| ||||||| | ||| || |||| || Sbjct 281502 ACCAAGTGAAGAGTAGACTCTTTCTGGATATTGTAATCAGCCAGTGTACGCCCATCCTCG 281561 Query 192388 AATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGT 192447 | || || ||||||||||| | ||||| || ||||| || || || || ||||| || Sbjct 281562 AGCTGCTTTCCAGCAAAGATGAGCCTCTGCTGGTCAGGCGGGATACCCTCCTTATCCTGG 281621 Query 192448 ATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCT--AGAGTAATGGTTT 192505 || || || |||||| || | | || || || ||| || |||||||| | Sbjct 281622 ATCTTGGCCTTCACATTATCAATGGTGCCAGAGCTCTCAACCTCTCAAGTGTAATGGTCT 281681 Query 192506 TACCAGTTAATGTTTTAATAAATATCTGCA 192535 | || |||| || || | ||| ||||||| Sbjct 281682 TCCCGGTTAGCGTCTTGACAAAGATCTGCA 281711 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 983615485656300