Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Aegilops_20tauschii_20subsp._20tauschii_20[refseq_20GCF_5F001957025.
1_202017-01-19] 68,538 sequences; 4,327,321,625 total letters
Query= NC_021248.1
Length=307691
Score E
Sequences producing significant alignments: (Bits) Value
seq16495 105 1e-17
seq54907 89.7 1e-12
>seq16495
Length=532983
Score = 105 bits (116), Expect = 1e-17
Identities = 133/183 (73%), Gaps = 0/183 (0%)
Strand=Plus/Minus
Query 192354 GATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCT 192413
|||||| ||||||| | ||| || |||| || | || || ||||||||||| | |
Sbjct 85388 GATATTGTAATCAGCAAGTGTCCGCCCATCCTCGAGCTGCTTGCCAGCAAAGATGAGCCG 85329
Query 192414 CTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGA 192473
||| ||||| ||||| ||||| || ||||||||||| || || |||||| || |
Sbjct 85328 CTGCTGATCCGGTGGGATTCCCTCCTTATCTTGTATCTTTGCGTTGACATTATCGATTGT 85269
Query 192474 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTG 192533
||| ||||| || || || | || ||||| || ||||| | || || | ||| |||||
Sbjct 85268 ATCAGACGACTCAACCTCAACTGTGATGGTCTTGCCAGTGAGGGTCTTCACAAAGATCTG 85209
Query 192534 CAT 192536
|||
Sbjct 85208 CAT 85206
>seq54907
Length=1337563
Score = 89.7 bits (98), Expect = 1e-12
Identities = 156/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 192310 CCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGAT 192369
||||||| || |||| || | || | |||| ||| || ||||| |||||||
Sbjct 281714 CCACCTCGGAGGCGTAGGACCAGGTGAAGGGTAGACTCCTTCTGAATATTGTAATCAGCC 281773
Query 192370 AATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGT 192429
|| || | |||| || | || || || |||||||| | ||||| || ||||| |
Sbjct 281774 AAAGTGTGCCCATCCTCGAGCTGCTTTCCGGCAAAGATGAGCCTCTGCTGGTCAGGCAGG 281833
Query 192430 ATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACT 192489
|| ||||| ||||| || || || || |||||| || | || || || |||
Sbjct 281834 ATACCTTCCTTATCCTGGATCTTGGCCTTCACATTATCAATGGTGTCGGAGCTCTCCACT 281893
Query 192490 TCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536
|| ||||| ||||| || ||||||| || || | ||||||||||||
Sbjct 281894 TCAAGAGTGATGGTCTTTCCAGTTAGCGTCTTGACAAATATCTGCAT 281940
Score = 84.2 bits (92), Expect = 4e-11
Identities = 145/210 (69%), Gaps = 2/210 (1%)
Strand=Plus/Plus
Query 192328 ACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGATAATGTTCGTTCATCATCC 192387
|| || || | ||||| |||||| |||||| ||||||| | ||| || |||| ||
Sbjct 281502 ACCAAGTGAAGAGTAGACTCTTTCTGGATATTGTAATCAGCCAGTGTACGCCCATCCTCG 281561
Query 192388 AATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGT 192447
| || || ||||||||||| | ||||| || ||||| || || || || ||||| ||
Sbjct 281562 AGCTGCTTTCCAGCAAAGATGAGCCTCTGCTGGTCAGGCGGGATACCCTCCTTATCCTGG 281621
Query 192448 ATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCT--AGAGTAATGGTTT 192505
|| || || |||||| || | | || || || ||| || |||||||| |
Sbjct 281622 ATCTTGGCCTTCACATTATCAATGGTGCCAGAGCTCTCAACCTCTCAAGTGTAATGGTCT 281681
Query 192506 TACCAGTTAATGTTTTAATAAATATCTGCA 192535
| || |||| || || | ||| |||||||
Sbjct 281682 TCCCGGTTAGCGTCTTGACAAAGATCTGCA 281711
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 983615485656300
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |