Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aegilops_20tauschii_20subsp._20tauschii_20[refseq_20GCF_5F001957025. 1_202017-01-19] 68,538 sequences; 4,327,321,625 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq19123 145 2e-29 seq39158 138 3e-27 seq15487 138 3e-27 seq37240 134 4e-26 seq35390 123 7e-23 seq66718 114 4e-20 seq39098 98.7 3e-15 seq36607 98.7 3e-15 >seq19123 Length=2860871 Score = 145 bits (160), Expect = 2e-29 Identities = 220/313 (70%), Gaps = 0/313 (0%) Strand=Plus/Minus Query 302565 CATAATGTCTTCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTT 302624 ||||||||| |||||| ||| | | | ||||||||||| || || || ||||| Sbjct 1591003 CATAATGTCCTCCATAGCCTTCACGAGCCTCCGCTGAATATATCCCGTCTCGGAGGTTTT 1590944 Query 302625 TACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGG 302684 ||||| |||||||| | ||| | | ||||||||||||||||||||| | |||| || Sbjct 1590943 CACAGCAGTATCAATCAAACCTTCTCTACCACCCATAGCATGGAAGAAAAATTCTTGTGG 1590884 Query 302685 TCGTAGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGAA 302744 | || || | || | ||| ||||||| || ||||| ||||| | ||| Sbjct 1590883 TGTCAGACCTCGAAGGTAAGAGTTCTCAACAAACCCACGACTTTCGGGGCCGTAGTCATC 1590824 Query 302745 CTTGGTAAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAAC 302804 || || ||||| |||| || | | || | || |||| || ||||| || ||||| Sbjct 1590823 TTTCGTGAAGTGGGGCAATGTACGATCAACAAAACCAAATGGAATCCGCTTGCCCTCAAC 1590764 Query 302805 GTTCTGCTGTCCCAGGCACGAAATCATCTGCGAAATATTTAAATCACTGCCCTTGGAGCC 302864 ||||||||||| | || | | |||| ||||||||||| | |||||| || ||||| Sbjct 1590763 ATTCTGCTGTCCGACACAAGCAGTCATTTGCGAAATATTAATGAAACTGCCTTTTGAGCC 1590704 Query 302865 AGCATTTACCATA 302877 ||| | |||||| Sbjct 1590703 TGCAGTGACCATA 1590691 >seq39158 Length=954686 Score = 138 bits (152), Expect = 3e-27 Identities = 237/340 (70%), Gaps = 3/340 (1%) Strand=Plus/Plus Query 302539 TTTCTTACGGTCATATCATAACCAATCATAATGTCTTCCATACTCTTGATTAAACGACGC 302598 || || ||||| |||||| | ||| ||||| ||||| ||| | | | ||| Sbjct 404761 TTCCTCACGGTACCATCATATTTCACCATGATGTCCTCCATGGCCTTCACGAGCCTCCGC 404820 Query 302599 TGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACCC 302658 |||||||| ||||| ||| ||||||||||| ||||| || | ||| | | ||||||| Sbjct 404821 TGAATATATCCAGTCTCAGAAGTTTTTACAGCAGTATCGATCAAACCTTCTCTACCACCC 404880 Query 302659 ATAGCATGGAAGAATAGCTCTTCCGGTCGTAGCCCCCCAATAAAGGAGCTCTCAACGAAA 302718 |||||||||||||| | || || ||| || || | || | ||| ||| ||||| Sbjct 404881 ATAGCATGGAAGAAGAATTCCTCTGGTGTCAGGCCTCGAAGGTAAGAGTTCT-GACGAAT 404939 Query 302719 CCACGCGCCTCGGGCGAATCGTCGAACTTG-GTAAAGTGTGGCAGGGTCCTGTTCTCATA 302777 ||||| ||||| | ||| | ||| | ||||| |||| || | || | Sbjct 404940 CCACGGCTTTCGGGACCGTTGTC-ATTTTGTGAGAAGTGGGGCAATGTACGACCAGCAAA 404998 Query 302778 GCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCCCAGGCACGAAATCATCTGCGA 302837 || ||||||| | ||| || ||||| ||||||||||| | ||| | | |||||||||| Sbjct 404999 TCCAAATGGGATCCTCTTGCCCTCAACATTCTGCTGTCCGACGCAAGCAGTCATCTGCGA 405058 Query 302838 AATATTTAAATCACTGCCCTTGGAGCCAGCATTTACCATA 302877 |||||| | |||||| || ||||| ||| | |||||| Sbjct 405059 AATATTAATGAAACTGCCTTTTGAGCCTGCAGTAACCATA 405098 Score = 132 bits (146), Expect = 1e-25 Identities = 235/340 (69%), Gaps = 2/340 (1%) Strand=Plus/Minus Query 302539 TTTCTTACGGTCATATCATAACCAATCATAATGTCTTCCATACTCTTGATTAAACGACGC 302598 ||||| ||||| ||| || | ||| ||||| ||||| ||| | | | ||| Sbjct 476087 TTTCTAACGGTACCATCGTATTTCACCATGATGTCCTCCATGGCCTTCACGAGCCTCCGC 476028 Query 302599 TGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACCC 302658 |||||||| ||||| || ||||| ||||| |||||||| ||||| | | ||||||| Sbjct 476027 TGAATATATCCAGTCTCGGAAGTTTTCACAGCAGTATCAATCAGACCTTCTCTACCACCC 475968 Query 302659 ATAGCATGGAAGAATAGCTCTTCCGGTCGTAGCCCCCCAATAAAGGAGCTCTCAACGAAA 302718 |||||||||||||| | || | ||| || || | || | ||| |||| ||||| Sbjct 475967 ATAGCATGGAAGAAGAATTCCTGTGGTGTCAGGCCTCGAAGGTAAGAGTTCTCCACGAAT 475908 Query 302719 CCACGCGCCTCGGGCGAATCGTCGAACTTG-GTAAAGTGTGGCAGGGTCCTGTTCTCATA 302777 ||||| || || ||||| | ||| || ||||| |||| || | || | Sbjct 475907 CCACGGCTTTCAGGACTGTCGTC-ATTTTGCGTGAAGTGGGGCAATGTACGACCAGCAAA 475849 Query 302778 GCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCCCAGGCACGAAATCATCTGCGA 302837 || ||||||| | ||| || ||||| ||||||||||| | || | |||| ||||| Sbjct 475848 ACCAAATGGGATCCTCTTCCCTTCAACATTCTGCTGTCCGACACAAGCGGTCATTTGCGA 475789 Query 302838 AATATTTAAATCACTGCCCTTGGAGCCAGCATTTACCATA 302877 |||||| | |||||| || ||||| ||| | |||||| Sbjct 475788 AATATTAATGAAACTGCCTTTTGAGCCTGCAGTGACCATA 475749 >seq15487 Length=302558 Score = 138 bits (152), Expect = 3e-27 Identities = 234/339 (69%), Gaps = 0/339 (0%) Strand=Plus/Minus Query 302539 TTTCTTACGGTCATATCATAACCAATCATAATGTCTTCCATACTCTTGATTAAACGACGC 302598 || || ||||| |||||| | ||| ||||| ||||| ||| | | | ||| Sbjct 47150 TTCCTCACGGTACCATCATATTTCACCATGATGTCCTCCATGGCCTTCACGAGCCTCCGC 47091 Query 302599 TGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACCC 302658 |||||||| ||||| ||| ||||| ||||| |||||||| | ||| | | ||||||| Sbjct 47090 TGAATATATCCAGTCTCAGAAGTTTTCACAGCAGTATCAATCAAACCTTCTCTACCACCC 47031 Query 302659 ATAGCATGGAAGAATAGCTCTTCCGGTCGTAGCCCCCCAATAAAGGAGCTCTCAACGAAA 302718 ||||||||||| || | || | ||| || || | || | ||| |||| ||||| Sbjct 47030 ATAGCATGGAAAAAGAATTCCTGTGGTGTCAGGCCTCGAAGGTAAGAGTTCTCCACGAAT 46971 Query 302719 CCACGCGCCTCGGGCGAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTCTCATAG 302778 ||||| || || || || | | || ||||| |||| || | || | Sbjct 46970 CCACGGCTTTCAGGGCTATAGTTGTTTTGCGTGAAGTGGGGCAATGTACGACCAGCAAAA 46911 Query 302779 CCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCCCAGGCACGAAATCATCTGCGAA 302838 || ||||||| | ||| || ||||| ||||||||||| | ||| | | ||||||||||| Sbjct 46910 CCAAATGGGATCCTCTTGCCCTCAACATTCTGCTGTCCGACGCAAGCAGTCATCTGCGAA 46851 Query 302839 ATATTTAAATCACTGCCCTTGGAGCCAGCATTTACCATA 302877 ||||| | |||||| || ||||| ||| | |||||| Sbjct 46850 ATATTAATGAAACTGCCTTTTGAGCCTGCAGTGACCATA 46812 >seq37240 Length=85469 Score = 134 bits (148), Expect = 4e-26 Identities = 238/343 (69%), Gaps = 8/343 (2%) Strand=Plus/Plus Query 302539 TTTCTTACGGTCATATCATAACCAATCATAATGTCTTCCATACTCTTGATTAAACGACGC 302598 ||||| ||||| ||||| || ||| |||||||||||| ||| | | | ||| Sbjct 14964 TTTCTAACGGTACCGTCATATTTAACCATGATGTCTTCCATAGCCTTCACGAGCCTGCGC 15023 Query 302599 TGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACCC 302658 |||||||| ||||| || ||||| ||||| |||||||| | ||| | | ||||||| Sbjct 15024 TGAATATACCCAGTCTCGGAAGTTTTCACAGCAGTATCAATCAAACCTTCTCTACCACCC 15083 Query 302659 ATAGCATGGAAGAATAGCTCTTCCGGTCGTAGCCCCCCAATAAAGGAGCTCTCAACGAAA 302718 |||||||||||||| | || | ||| | || | || | | ||| |||| || || Sbjct 15084 ATAGCATGGAAGAAAAATTCCTGTGGTGTCAAGCCTCGAAGATAAGAGTTCTCCACAAAT 15143 Query 302719 CCACGCGCCTC-GGGCGAATCGTCG--AAC-TTGGTAAAGTGTGGCAGGGTCCTGTTCTC 302774 ||||| || |||| ||| | | | || || ||||| |||| || | | | Sbjct 15144 CCACGGCTTTCAGGGC----CGTAGTTATCTTTCGTGAAGTGGGGCAATGTACGATCAAC 15199 Query 302775 ATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCCCAGGCACGAAATCATCTG 302834 | | || |||| || || || || ||||||||||||||||| | || | | |||| || Sbjct 15200 AAAACCAAATGGAATCCGTTTGCCCTCAACGTTCTGCTGTCCGACACAAGCAGTCATTTG 15259 Query 302835 CGAAATATTTAAATCACTGCCCTTGGAGCCAGCATTTACCATA 302877 |||||||| | |||||| || ||||| ||| | |||||| Sbjct 15260 TGAAATATTAATGAAACTGCCTTTTGAGCCTGCAGTGACCATA 15302 >seq35390 Length=167308 Score = 123 bits (136), Expect = 7e-23 Identities = 174/240 (73%), Gaps = 11/240 (5%) Strand=Plus/Plus Query 289029 ACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATTGC 289088 |||||||||||||| ||||||||| ||||| | |||||| | || | | || || | Sbjct 153467 ACCAACAGCATCAAGTTCGTCAATAAAAATGATTGACGGAGCAGCTTCTTTGGC--TTCC 153524 Query 289089 --AAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAA 289146 |||||||| |||||||||| |||||| |||||| ||||||| |||||||| | Sbjct 153525 TTGAATAATTCCCTTACACGGGCTGCTCCTCTTCCAACAAACATTTCGACAAATTCGCTA 153584 Query 289147 GCGGATACTTGAATGAATG---TTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGT 289203 || || || | ||||| || || || || ||||| |||||| ||||||| | Sbjct 153585 GCAGAAACAGAGAAGAATGGAATTCCA---GCCTCTCCTGCAACTGCCTTCGCCAGCAAA 153641 Query 289204 GTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGC-CCCAGC 289262 || || || |||||||| || || | | ||||| ||| | |||| | |||| |||||| Sbjct 153642 GTTTTCCCAGTTCCAGGAGGGCCAGCAAGCAGAACACCCCTGGGTAATCTTGCTCCCAGC 153701 >seq66718 Length=721455 Score = 114 bits (126), Expect = 4e-20 Identities = 157/219 (72%), Gaps = 3/219 (1%) Strand=Plus/Plus Query 156050 ACCATTCCTCTTGCC---ACCCTGATCTACATACCGAGCAGTCTTATTGAAGACACCTAG 156106 ||| || |||||||| ||| ||||||||||| |||||||| | ||||||||||| || Sbjct 180481 ACCCTTTCTCTTGCCTCCACCTTGATCTACATAACGAGCAGTATCATTGAAGACACGTAA 180540 Query 156107 CATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATGAGCG 156166 |||||||| ||| |||||||| || ||||| ||||| ||||||| |||| | || Sbjct 180541 CATAGGAACAATCCCATTGGATGTCCCATTTGTTCCTCGAATATAACTCCCAGTAGCACG 180600 Query 156167 AACATTATGAATATGTAGTCCAATACCACCTGACCATTTAGAAATTTGAGCGCATTCCTT 156226 || || |||| | ||||| || || | |||| || ||| |||||||| Sbjct 180601 AATGTTGTGAACTGAGACACCAATCCCTCCAGCAGATTTGCTTATGACAGCACATTCCTT 180660 Query 156227 TACAGTATTGAAAATACCTTCAATAGAATCATCTTCCAT 156265 | ||||| | || || ||||| |||||||| ||| Sbjct 180661 GAGAGTATCATAGATTCCCTCAATGCTATCATCTTTCAT 180699 >seq39098 Length=1603004 Score = 98.7 bits (108), Expect = 3e-15 Identities = 215/317 (68%), Gaps = 4/317 (1%) Strand=Plus/Plus Query 289029 ACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATTGC 289088 ||||| ||||||||||| ||||| || | | || || | | || | || | Sbjct 183812 ACCAATTGCATCAATTTCATCAATAAATACAATACTAGGTGCACATTCCCGAGCTTCTTG 183871 Query 289089 AAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAGC 289148 |||||| ||| || | ||||| ||||| ||||||| ||||||| | || || ||| | Sbjct 183872 AAATAAGCTTCTCACCCTGGATGGTCCAACACCAACAAACATTTCCAAGAAGTCTGAACC 183931 Query 289149 GGATACTTGA-ATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCT 289207 |||| | || | ||| | |||| | || || || || | || || || |||| Sbjct 183932 AGATA-TAGACAAGAAAGGTACACCAGACTCTCCAGCAGTAGCTTTAGCAAGGAGAGTCT 183990 Query 289208 TACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGC-CCCAGCAGAC 289266 | ||||| ||||| || || | ||| | ||||| |||| ||| || |||||| | Sbjct 183991 TCCCTGTGCCAGGGGGGCCACAAAGAAGAGCACCCTTCGGTATTTTAGCTCCCAGC-GCT 184049 Query 289267 TTATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTTGCCTCA 289326 | |||||| |||||| | || | || | |||| |||| | ||| | ||| || ||| Sbjct 184050 TCATATTTGTCAGGGTTTTTCAGGAAATGAACAAATTCCATGATTTCTTGTTTAGCTTCA 184109 Query 289327 TCACATCCTGCTACATC 289343 ||||| || |||||||| Sbjct 184110 TCACAACCAGCTACATC 184126 >seq36607 Length=187071 Score = 98.7 bits (108), Expect = 3e-15 Identities = 206/302 (68%), Gaps = 10/302 (3%) Strand=Plus/Minus Query 251403 GGCGATAAGACCACACTTATTACACACATGGACGCTGTAAGCATCAGATGCGTCATATAG 251462 ||| || || |||||||| | ||| ||||| || ||||||||||| |||| ||| Sbjct 82355 GGCAATGAGTCCACACTTCTCACAAACATGCACTCTGTAAGCATCGCTCTGGTCAAATAA 82296 Query 251463 CCGACCCTTGGTGAAGCGAGATGCACCGTGTGAAATCATACAATCACGCTCCATTTCACC 251522 || |||| ||| || || || || | |||||| ||||| | ||||||||| || Sbjct 82295 CCTTTCCTTCAAGAAAAAAGCAGCTCCATGAGCAATCATGCAATCCCTCTCCATTTCTCC 82236 Query 251523 GAAACGAAGACCACCATCGCGAGCCCTACCCTCGGCAGGCTGACGAGTGAGATTAACCAT 251582 ||||| ||||||||||| || | | ||||| || ||||| | || || | | Sbjct 82235 AAAACGGAGACCACCATCACGTGAGCGCCCCTCTGCTGGCTGTCTGGTCAGTATCTGGAC 82176 Query 251583 AGGAC--CGA--TGGAGCGGCTATGTTGCTTATCATTTACCATATGCTTGAGACGCTGGT 251638 ||||| ||| | || | || ||| |||| ||||||||||| || | ||||| Sbjct 82175 AGGACCACGACCTCTAGAGTGAATTTTG----TCATCCACCATATGCTTAAGTCTCTGGT 82120 Query 251639 AGAATGCGGGACCGATGAAGATGCTCGAAGGC-ATTTGCTCTCCAGTTAGAGCGTTATAC 251697 || | | ||||| | ||| || | | || | |||| ||| ||||| || | || ||| Sbjct 82119 AGTAAGTTGGACCTAAGAAAATCATTGCAGTCAATTTTCTC-CCAGTATGACCATTGTAC 82061 Query 251698 AT 251699 || Sbjct 82060 AT 82059 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1470525133493306