Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Aegilops_20tauschii_20subsp._20tauschii_20[refseq_20GCF_5F001957025.
1_202017-01-19] 68,538 sequences; 4,327,321,625 total letters
Query= NC_021312.1
Length=459984
Score E
Sequences producing significant alignments: (Bits) Value
seq19123 145 2e-29
seq39158 138 3e-27
seq15487 138 3e-27
seq37240 134 4e-26
seq35390 123 7e-23
seq66718 114 4e-20
seq39098 98.7 3e-15
seq36607 98.7 3e-15
>seq19123
Length=2860871
Score = 145 bits (160), Expect = 2e-29
Identities = 220/313 (70%), Gaps = 0/313 (0%)
Strand=Plus/Minus
Query 302565 CATAATGTCTTCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTT 302624
||||||||| |||||| ||| | | | ||||||||||| || || || |||||
Sbjct 1591003 CATAATGTCCTCCATAGCCTTCACGAGCCTCCGCTGAATATATCCCGTCTCGGAGGTTTT 1590944
Query 302625 TACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGG 302684
||||| |||||||| | ||| | | ||||||||||||||||||||| | |||| ||
Sbjct 1590943 CACAGCAGTATCAATCAAACCTTCTCTACCACCCATAGCATGGAAGAAAAATTCTTGTGG 1590884
Query 302685 TCGTAGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGAA 302744
| || || | || | ||| ||||||| || ||||| ||||| | |||
Sbjct 1590883 TGTCAGACCTCGAAGGTAAGAGTTCTCAACAAACCCACGACTTTCGGGGCCGTAGTCATC 1590824
Query 302745 CTTGGTAAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAAC 302804
|| || ||||| |||| || | | || | || |||| || ||||| || |||||
Sbjct 1590823 TTTCGTGAAGTGGGGCAATGTACGATCAACAAAACCAAATGGAATCCGCTTGCCCTCAAC 1590764
Query 302805 GTTCTGCTGTCCCAGGCACGAAATCATCTGCGAAATATTTAAATCACTGCCCTTGGAGCC 302864
||||||||||| | || | | |||| ||||||||||| | |||||| || |||||
Sbjct 1590763 ATTCTGCTGTCCGACACAAGCAGTCATTTGCGAAATATTAATGAAACTGCCTTTTGAGCC 1590704
Query 302865 AGCATTTACCATA 302877
||| | ||||||
Sbjct 1590703 TGCAGTGACCATA 1590691
>seq39158
Length=954686
Score = 138 bits (152), Expect = 3e-27
Identities = 237/340 (70%), Gaps = 3/340 (1%)
Strand=Plus/Plus
Query 302539 TTTCTTACGGTCATATCATAACCAATCATAATGTCTTCCATACTCTTGATTAAACGACGC 302598
|| || ||||| |||||| | ||| ||||| ||||| ||| | | | |||
Sbjct 404761 TTCCTCACGGTACCATCATATTTCACCATGATGTCCTCCATGGCCTTCACGAGCCTCCGC 404820
Query 302599 TGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACCC 302658
|||||||| ||||| ||| ||||||||||| ||||| || | ||| | | |||||||
Sbjct 404821 TGAATATATCCAGTCTCAGAAGTTTTTACAGCAGTATCGATCAAACCTTCTCTACCACCC 404880
Query 302659 ATAGCATGGAAGAATAGCTCTTCCGGTCGTAGCCCCCCAATAAAGGAGCTCTCAACGAAA 302718
|||||||||||||| | || || ||| || || | || | ||| ||| |||||
Sbjct 404881 ATAGCATGGAAGAAGAATTCCTCTGGTGTCAGGCCTCGAAGGTAAGAGTTCT-GACGAAT 404939
Query 302719 CCACGCGCCTCGGGCGAATCGTCGAACTTG-GTAAAGTGTGGCAGGGTCCTGTTCTCATA 302777
||||| ||||| | ||| | ||| | ||||| |||| || | || |
Sbjct 404940 CCACGGCTTTCGGGACCGTTGTC-ATTTTGTGAGAAGTGGGGCAATGTACGACCAGCAAA 404998
Query 302778 GCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCCCAGGCACGAAATCATCTGCGA 302837
|| ||||||| | ||| || ||||| ||||||||||| | ||| | | ||||||||||
Sbjct 404999 TCCAAATGGGATCCTCTTGCCCTCAACATTCTGCTGTCCGACGCAAGCAGTCATCTGCGA 405058
Query 302838 AATATTTAAATCACTGCCCTTGGAGCCAGCATTTACCATA 302877
|||||| | |||||| || ||||| ||| | ||||||
Sbjct 405059 AATATTAATGAAACTGCCTTTTGAGCCTGCAGTAACCATA 405098
Score = 132 bits (146), Expect = 1e-25
Identities = 235/340 (69%), Gaps = 2/340 (1%)
Strand=Plus/Minus
Query 302539 TTTCTTACGGTCATATCATAACCAATCATAATGTCTTCCATACTCTTGATTAAACGACGC 302598
||||| ||||| ||| || | ||| ||||| ||||| ||| | | | |||
Sbjct 476087 TTTCTAACGGTACCATCGTATTTCACCATGATGTCCTCCATGGCCTTCACGAGCCTCCGC 476028
Query 302599 TGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACCC 302658
|||||||| ||||| || ||||| ||||| |||||||| ||||| | | |||||||
Sbjct 476027 TGAATATATCCAGTCTCGGAAGTTTTCACAGCAGTATCAATCAGACCTTCTCTACCACCC 475968
Query 302659 ATAGCATGGAAGAATAGCTCTTCCGGTCGTAGCCCCCCAATAAAGGAGCTCTCAACGAAA 302718
|||||||||||||| | || | ||| || || | || | ||| |||| |||||
Sbjct 475967 ATAGCATGGAAGAAGAATTCCTGTGGTGTCAGGCCTCGAAGGTAAGAGTTCTCCACGAAT 475908
Query 302719 CCACGCGCCTCGGGCGAATCGTCGAACTTG-GTAAAGTGTGGCAGGGTCCTGTTCTCATA 302777
||||| || || ||||| | ||| || ||||| |||| || | || |
Sbjct 475907 CCACGGCTTTCAGGACTGTCGTC-ATTTTGCGTGAAGTGGGGCAATGTACGACCAGCAAA 475849
Query 302778 GCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCCCAGGCACGAAATCATCTGCGA 302837
|| ||||||| | ||| || ||||| ||||||||||| | || | |||| |||||
Sbjct 475848 ACCAAATGGGATCCTCTTCCCTTCAACATTCTGCTGTCCGACACAAGCGGTCATTTGCGA 475789
Query 302838 AATATTTAAATCACTGCCCTTGGAGCCAGCATTTACCATA 302877
|||||| | |||||| || ||||| ||| | ||||||
Sbjct 475788 AATATTAATGAAACTGCCTTTTGAGCCTGCAGTGACCATA 475749
>seq15487
Length=302558
Score = 138 bits (152), Expect = 3e-27
Identities = 234/339 (69%), Gaps = 0/339 (0%)
Strand=Plus/Minus
Query 302539 TTTCTTACGGTCATATCATAACCAATCATAATGTCTTCCATACTCTTGATTAAACGACGC 302598
|| || ||||| |||||| | ||| ||||| ||||| ||| | | | |||
Sbjct 47150 TTCCTCACGGTACCATCATATTTCACCATGATGTCCTCCATGGCCTTCACGAGCCTCCGC 47091
Query 302599 TGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACCC 302658
|||||||| ||||| ||| ||||| ||||| |||||||| | ||| | | |||||||
Sbjct 47090 TGAATATATCCAGTCTCAGAAGTTTTCACAGCAGTATCAATCAAACCTTCTCTACCACCC 47031
Query 302659 ATAGCATGGAAGAATAGCTCTTCCGGTCGTAGCCCCCCAATAAAGGAGCTCTCAACGAAA 302718
||||||||||| || | || | ||| || || | || | ||| |||| |||||
Sbjct 47030 ATAGCATGGAAAAAGAATTCCTGTGGTGTCAGGCCTCGAAGGTAAGAGTTCTCCACGAAT 46971
Query 302719 CCACGCGCCTCGGGCGAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTCTCATAG 302778
||||| || || || || | | || ||||| |||| || | || |
Sbjct 46970 CCACGGCTTTCAGGGCTATAGTTGTTTTGCGTGAAGTGGGGCAATGTACGACCAGCAAAA 46911
Query 302779 CCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCCCAGGCACGAAATCATCTGCGAA 302838
|| ||||||| | ||| || ||||| ||||||||||| | ||| | | |||||||||||
Sbjct 46910 CCAAATGGGATCCTCTTGCCCTCAACATTCTGCTGTCCGACGCAAGCAGTCATCTGCGAA 46851
Query 302839 ATATTTAAATCACTGCCCTTGGAGCCAGCATTTACCATA 302877
||||| | |||||| || ||||| ||| | ||||||
Sbjct 46850 ATATTAATGAAACTGCCTTTTGAGCCTGCAGTGACCATA 46812
>seq37240
Length=85469
Score = 134 bits (148), Expect = 4e-26
Identities = 238/343 (69%), Gaps = 8/343 (2%)
Strand=Plus/Plus
Query 302539 TTTCTTACGGTCATATCATAACCAATCATAATGTCTTCCATACTCTTGATTAAACGACGC 302598
||||| ||||| ||||| || ||| |||||||||||| ||| | | | |||
Sbjct 14964 TTTCTAACGGTACCGTCATATTTAACCATGATGTCTTCCATAGCCTTCACGAGCCTGCGC 15023
Query 302599 TGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACCC 302658
|||||||| ||||| || ||||| ||||| |||||||| | ||| | | |||||||
Sbjct 15024 TGAATATACCCAGTCTCGGAAGTTTTCACAGCAGTATCAATCAAACCTTCTCTACCACCC 15083
Query 302659 ATAGCATGGAAGAATAGCTCTTCCGGTCGTAGCCCCCCAATAAAGGAGCTCTCAACGAAA 302718
|||||||||||||| | || | ||| | || | || | | ||| |||| || ||
Sbjct 15084 ATAGCATGGAAGAAAAATTCCTGTGGTGTCAAGCCTCGAAGATAAGAGTTCTCCACAAAT 15143
Query 302719 CCACGCGCCTC-GGGCGAATCGTCG--AAC-TTGGTAAAGTGTGGCAGGGTCCTGTTCTC 302774
||||| || |||| ||| | | | || || ||||| |||| || | | |
Sbjct 15144 CCACGGCTTTCAGGGC----CGTAGTTATCTTTCGTGAAGTGGGGCAATGTACGATCAAC 15199
Query 302775 ATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCCCAGGCACGAAATCATCTG 302834
| | || |||| || || || || ||||||||||||||||| | || | | |||| ||
Sbjct 15200 AAAACCAAATGGAATCCGTTTGCCCTCAACGTTCTGCTGTCCGACACAAGCAGTCATTTG 15259
Query 302835 CGAAATATTTAAATCACTGCCCTTGGAGCCAGCATTTACCATA 302877
|||||||| | |||||| || ||||| ||| | ||||||
Sbjct 15260 TGAAATATTAATGAAACTGCCTTTTGAGCCTGCAGTGACCATA 15302
>seq35390
Length=167308
Score = 123 bits (136), Expect = 7e-23
Identities = 174/240 (73%), Gaps = 11/240 (5%)
Strand=Plus/Plus
Query 289029 ACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATTGC 289088
|||||||||||||| ||||||||| ||||| | |||||| | || | | || || |
Sbjct 153467 ACCAACAGCATCAAGTTCGTCAATAAAAATGATTGACGGAGCAGCTTCTTTGGC--TTCC 153524
Query 289089 --AAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAA 289146
|||||||| |||||||||| |||||| |||||| ||||||| |||||||| |
Sbjct 153525 TTGAATAATTCCCTTACACGGGCTGCTCCTCTTCCAACAAACATTTCGACAAATTCGCTA 153584
Query 289147 GCGGATACTTGAATGAATG---TTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGT 289203
|| || || | ||||| || || || || ||||| |||||| ||||||| |
Sbjct 153585 GCAGAAACAGAGAAGAATGGAATTCCA---GCCTCTCCTGCAACTGCCTTCGCCAGCAAA 153641
Query 289204 GTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGC-CCCAGC 289262
|| || || |||||||| || || | | ||||| ||| | |||| | |||| ||||||
Sbjct 153642 GTTTTCCCAGTTCCAGGAGGGCCAGCAAGCAGAACACCCCTGGGTAATCTTGCTCCCAGC 153701
>seq66718
Length=721455
Score = 114 bits (126), Expect = 4e-20
Identities = 157/219 (72%), Gaps = 3/219 (1%)
Strand=Plus/Plus
Query 156050 ACCATTCCTCTTGCC---ACCCTGATCTACATACCGAGCAGTCTTATTGAAGACACCTAG 156106
||| || |||||||| ||| ||||||||||| |||||||| | ||||||||||| ||
Sbjct 180481 ACCCTTTCTCTTGCCTCCACCTTGATCTACATAACGAGCAGTATCATTGAAGACACGTAA 180540
Query 156107 CATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATGAGCG 156166
|||||||| ||| |||||||| || ||||| ||||| ||||||| |||| | ||
Sbjct 180541 CATAGGAACAATCCCATTGGATGTCCCATTTGTTCCTCGAATATAACTCCCAGTAGCACG 180600
Query 156167 AACATTATGAATATGTAGTCCAATACCACCTGACCATTTAGAAATTTGAGCGCATTCCTT 156226
|| || |||| | ||||| || || | |||| || ||| ||||||||
Sbjct 180601 AATGTTGTGAACTGAGACACCAATCCCTCCAGCAGATTTGCTTATGACAGCACATTCCTT 180660
Query 156227 TACAGTATTGAAAATACCTTCAATAGAATCATCTTCCAT 156265
| ||||| | || || ||||| |||||||| |||
Sbjct 180661 GAGAGTATCATAGATTCCCTCAATGCTATCATCTTTCAT 180699
>seq39098
Length=1603004
Score = 98.7 bits (108), Expect = 3e-15
Identities = 215/317 (68%), Gaps = 4/317 (1%)
Strand=Plus/Plus
Query 289029 ACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATTGC 289088
||||| ||||||||||| ||||| || | | || || | | || | || |
Sbjct 183812 ACCAATTGCATCAATTTCATCAATAAATACAATACTAGGTGCACATTCCCGAGCTTCTTG 183871
Query 289089 AAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAGC 289148
|||||| ||| || | ||||| ||||| ||||||| ||||||| | || || ||| |
Sbjct 183872 AAATAAGCTTCTCACCCTGGATGGTCCAACACCAACAAACATTTCCAAGAAGTCTGAACC 183931
Query 289149 GGATACTTGA-ATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCT 289207
|||| | || | ||| | |||| | || || || || | || || || ||||
Sbjct 183932 AGATA-TAGACAAGAAAGGTACACCAGACTCTCCAGCAGTAGCTTTAGCAAGGAGAGTCT 183990
Query 289208 TACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGC-CCCAGCAGAC 289266
| ||||| ||||| || || | ||| | ||||| |||| ||| || |||||| |
Sbjct 183991 TCCCTGTGCCAGGGGGGCCACAAAGAAGAGCACCCTTCGGTATTTTAGCTCCCAGC-GCT 184049
Query 289267 TTATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTTGCCTCA 289326
| |||||| |||||| | || | || | |||| |||| | ||| | ||| || |||
Sbjct 184050 TCATATTTGTCAGGGTTTTTCAGGAAATGAACAAATTCCATGATTTCTTGTTTAGCTTCA 184109
Query 289327 TCACATCCTGCTACATC 289343
||||| || ||||||||
Sbjct 184110 TCACAACCAGCTACATC 184126
>seq36607
Length=187071
Score = 98.7 bits (108), Expect = 3e-15
Identities = 206/302 (68%), Gaps = 10/302 (3%)
Strand=Plus/Minus
Query 251403 GGCGATAAGACCACACTTATTACACACATGGACGCTGTAAGCATCAGATGCGTCATATAG 251462
||| || || |||||||| | ||| ||||| || ||||||||||| |||| |||
Sbjct 82355 GGCAATGAGTCCACACTTCTCACAAACATGCACTCTGTAAGCATCGCTCTGGTCAAATAA 82296
Query 251463 CCGACCCTTGGTGAAGCGAGATGCACCGTGTGAAATCATACAATCACGCTCCATTTCACC 251522
|| |||| ||| || || || || | |||||| ||||| | ||||||||| ||
Sbjct 82295 CCTTTCCTTCAAGAAAAAAGCAGCTCCATGAGCAATCATGCAATCCCTCTCCATTTCTCC 82236
Query 251523 GAAACGAAGACCACCATCGCGAGCCCTACCCTCGGCAGGCTGACGAGTGAGATTAACCAT 251582
||||| ||||||||||| || | | ||||| || ||||| | || || | |
Sbjct 82235 AAAACGGAGACCACCATCACGTGAGCGCCCCTCTGCTGGCTGTCTGGTCAGTATCTGGAC 82176
Query 251583 AGGAC--CGA--TGGAGCGGCTATGTTGCTTATCATTTACCATATGCTTGAGACGCTGGT 251638
||||| ||| | || | || ||| |||| ||||||||||| || | |||||
Sbjct 82175 AGGACCACGACCTCTAGAGTGAATTTTG----TCATCCACCATATGCTTAAGTCTCTGGT 82120
Query 251639 AGAATGCGGGACCGATGAAGATGCTCGAAGGC-ATTTGCTCTCCAGTTAGAGCGTTATAC 251697
|| | | ||||| | ||| || | | || | |||| ||| ||||| || | || |||
Sbjct 82119 AGTAAGTTGGACCTAAGAAAATCATTGCAGTCAATTTTCTC-CCAGTATGACCATTGTAC 82061
Query 251698 AT 251699
||
Sbjct 82060 AT 82059
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1470525133493306
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