Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aegilops_20tauschii_20subsp._20tauschii_20[refseq_20GCF_5F001957025. 1_202017-01-19] 68,538 sequences; 4,327,321,625 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq16495 91.5 1e-13 seq14904 91.5 1e-13 seq16568 89.7 4e-13 seq17562 86.0 5e-12 seq54907 82.4 6e-11 >seq16495 Length=532983 Score = 91.5 bits (100), Expect = 1e-13 Identities = 147/210 (70%), Gaps = 1/210 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 |||||||| ||||| ||||| | |||||||| ||||| ||| |||| ||| || | Sbjct 85434 ATGCAAATCTTTGTGAAAACCCTCACCGGCAAGACCATCACCCTCGAGGTTGAGTCTTCC 85493 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGT-GGATCA 110391 || || ||| | | || ||| |||||| ||||| || ||| | ||| ||| || Sbjct 85494 GACACGATCGACAATGTCAAAGCGAAGATCTAGGACAAGGAGGGCATCCCCCCCGGACCA 85553 Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451 || | | || | ||| || ||||| || ||||||| | ||| | || |||||||| Sbjct 85554 GCAGCGGTTGATCTTTGCCGGCAAACAACTTGAGGATGGGCGCACACTTGCTGATTACAA 85613 Query 110452 CATTCAAAAAGAATCTACGTTGCACATGGT 110481 ||| || ||||| || || | ||| |||| Sbjct 85614 CATCCAGAAAGAGTCCACCCTCCACTTGGT 85643 >seq14904 Length=321791 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || || || ||||| | |||||||| ||||||||| | || ||| || Sbjct 31167 ATGCAGATCTTCGTGAAAACCCTCACCGGCAAGACCATTACCCTAGAGGTCGAGTCTTCG 31226 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 ||||| | | | | || || |||||| ||||| || ||| | || ||| || Sbjct 31227 GATACGATTGACAATGTGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCTCCGGACCAG 31286 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || || | || | |||||| || ||||| ||||||| | || |||||||||||||| Sbjct 31287 CAGAGGTTGATCTTTGCGGGCAAGCAGCTTGAGGATGGTCGCACCCTGGCGGATTACAAC 31346 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTG 110482 ||||| || || ||||| | || ||||| Sbjct 31347 ATTCAGAAGGAGTCTACTCTCCATCTGGTG 31376 >seq16568 Length=483573 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 |||||||| ||||| || || | || ||| ||||| ||| |||| |||| || | Sbjct 297354 ATGCAAATCTTTGTGAAGACCCTCACTAACAAGACCATCACCCTCGAGGTGGAGTCTTCC 297413 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || | ||| | | || ||| |||||| ||||| || ||| | ||| || ||| Sbjct 297414 GACATGATCGACAATGTCAAAGCGAAGATCCAGGACAAGGAGGGCATCCCCCCAGACCAA 297473 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || || | || ||| || || || || ||||||| | || | || ||||||||| Sbjct 297474 CAGAGGTTGATCATTGCCGGAAAGCAACTTGAGGATGGGTGCACTCTTGCTGATTACAAC 297533 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGT 110481 || ||||| ||||| || ||||||||||| Sbjct 297534 ATCCAAAAGGAATCAACCTTGCACATGGT 297562 >seq17562 Length=36101 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || |||||||| || | |||||||| ||||| ||| | || |||| | Sbjct 6721 ATGCAGATTTTTGTCAAGACGCTCACCGGCAAGACCATCACCCTGGAGGTGGAGTCCTCG 6780 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || || ||| | | || || ||||| ||||| || || | ||| ||| || Sbjct 6781 GACACCATCGACAATGTGAAGGCCAAGATCCAGGACAAGGAGGGTATCCCCCCGGACCAG 6840 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || | || || | ||| || || ||||||||||||| | | || |||| || |||||| Sbjct 6841 CAGCGCCTCATCTTTGCTGGCAAGCAGCTGGAGGATGGCCGCACCCTGGCAGACTACAAC 6900 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 || || || || ||||| | ||| ||||| | | ||||| || || Sbjct 6901 ATCCAGAAGGAGTCTACCCTTCACCTGGTGCTCCGCCTGCGTGGTGG 6947 >seq54907 Length=1337563 Score = 82.4 bits (90), Expect = 6e-11 Identities = 135/195 (69%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 110275 GCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGACGA 110334 ||| || |||||||| || | || ||||| || || || | || ||| | || Sbjct 282394 GCAGATCTTTGTCAAGACCCTCACAGGCAAGACTATCACTCTTGAGGTCGAGAGTTCAGA 282335 Query 110335 TACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAACA 110394 ||| | | | | || ||| |||||| ||||| || ||| | || ||| ||||| Sbjct 282334 TACCATTGACAATGTTAAAGCCAAGATTCAGGACAAGGAGGGCATTCCTCCGGACCAACA 282275 Query 110395 AAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAACAT 110454 || || || | ||| || || ||||| ||||||| | | ||| |||| ||||||||||| Sbjct 282274 GAGGCTCATATTTGCTGGCAAGCAGCTAGAGGATGGCCGGACATTGGCCGATTACAACAT 282215 Query 110455 TCAAAAAGAATCTAC 110469 ||||| || ||||| Sbjct 282214 CCAAAAGGAGTCTAC 282200 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412496750573234