Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Aegilops_20tauschii_20subsp._20tauschii_20[refseq_20GCF_5F001957025.
1_202017-01-19] 68,538 sequences; 4,327,321,625 total letters
Query= NC_021924.1
Length=129052
Score E
Sequences producing significant alignments: (Bits) Value
seq16495 91.5 1e-13
seq14904 91.5 1e-13
seq16568 89.7 4e-13
seq17562 86.0 5e-12
seq54907 82.4 6e-11
>seq16495
Length=532983
Score = 91.5 bits (100), Expect = 1e-13
Identities = 147/210 (70%), Gaps = 1/210 (0%)
Strand=Plus/Plus
Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332
|||||||| ||||| ||||| | |||||||| ||||| ||| |||| ||| || |
Sbjct 85434 ATGCAAATCTTTGTGAAAACCCTCACCGGCAAGACCATCACCCTCGAGGTTGAGTCTTCC 85493
Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGT-GGATCA 110391
|| || ||| | | || ||| |||||| ||||| || ||| | ||| ||| ||
Sbjct 85494 GACACGATCGACAATGTCAAAGCGAAGATCTAGGACAAGGAGGGCATCCCCCCCGGACCA 85553
Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451
|| | | || | ||| || ||||| || ||||||| | ||| | || ||||||||
Sbjct 85554 GCAGCGGTTGATCTTTGCCGGCAAACAACTTGAGGATGGGCGCACACTTGCTGATTACAA 85613
Query 110452 CATTCAAAAAGAATCTACGTTGCACATGGT 110481
||| || ||||| || || | ||| ||||
Sbjct 85614 CATCCAGAAAGAGTCCACCCTCCACTTGGT 85643
>seq14904
Length=321791
Score = 91.5 bits (100), Expect = 1e-13
Identities = 146/210 (70%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332
||||| || || || ||||| | |||||||| ||||||||| | || ||| ||
Sbjct 31167 ATGCAGATCTTCGTGAAAACCCTCACCGGCAAGACCATTACCCTAGAGGTCGAGTCTTCG 31226
Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392
||||| | | | | || || |||||| ||||| || ||| | || ||| ||
Sbjct 31227 GATACGATTGACAATGTGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCTCCGGACCAG 31286
Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452
|| || | || | |||||| || ||||| ||||||| | || ||||||||||||||
Sbjct 31287 CAGAGGTTGATCTTTGCGGGCAAGCAGCTTGAGGATGGTCGCACCCTGGCGGATTACAAC 31346
Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTG 110482
||||| || || ||||| | || |||||
Sbjct 31347 ATTCAGAAGGAGTCTACTCTCCATCTGGTG 31376
>seq16568
Length=483573
Score = 89.7 bits (98), Expect = 4e-13
Identities = 145/209 (69%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332
|||||||| ||||| || || | || ||| ||||| ||| |||| |||| || |
Sbjct 297354 ATGCAAATCTTTGTGAAGACCCTCACTAACAAGACCATCACCCTCGAGGTGGAGTCTTCC 297413
Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392
|| | ||| | | || ||| |||||| ||||| || ||| | ||| || |||
Sbjct 297414 GACATGATCGACAATGTCAAAGCGAAGATCCAGGACAAGGAGGGCATCCCCCCAGACCAA 297473
Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452
|| || | || ||| || || || || ||||||| | || | || |||||||||
Sbjct 297474 CAGAGGTTGATCATTGCCGGAAAGCAACTTGAGGATGGGTGCACTCTTGCTGATTACAAC 297533
Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGT 110481
|| ||||| ||||| || |||||||||||
Sbjct 297534 ATCCAAAAGGAATCAACCTTGCACATGGT 297562
>seq17562
Length=36101
Score = 86.0 bits (94), Expect = 5e-12
Identities = 155/227 (68%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332
||||| || |||||||| || | |||||||| ||||| ||| | || |||| |
Sbjct 6721 ATGCAGATTTTTGTCAAGACGCTCACCGGCAAGACCATCACCCTGGAGGTGGAGTCCTCG 6780
Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392
|| || ||| | | || || ||||| ||||| || || | ||| ||| ||
Sbjct 6781 GACACCATCGACAATGTGAAGGCCAAGATCCAGGACAAGGAGGGTATCCCCCCGGACCAG 6840
Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452
|| | || || | ||| || || ||||||||||||| | | || |||| || ||||||
Sbjct 6841 CAGCGCCTCATCTTTGCTGGCAAGCAGCTGGAGGATGGCCGCACCCTGGCAGACTACAAC 6900
Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499
|| || || || ||||| | ||| ||||| | | ||||| || ||
Sbjct 6901 ATCCAGAAGGAGTCTACCCTTCACCTGGTGCTCCGCCTGCGTGGTGG 6947
>seq54907
Length=1337563
Score = 82.4 bits (90), Expect = 6e-11
Identities = 135/195 (69%), Gaps = 0/195 (0%)
Strand=Plus/Minus
Query 110275 GCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGACGA 110334
||| || |||||||| || | || ||||| || || || | || ||| | ||
Sbjct 282394 GCAGATCTTTGTCAAGACCCTCACAGGCAAGACTATCACTCTTGAGGTCGAGAGTTCAGA 282335
Query 110335 TACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAACA 110394
||| | | | | || ||| |||||| ||||| || ||| | || ||| |||||
Sbjct 282334 TACCATTGACAATGTTAAAGCCAAGATTCAGGACAAGGAGGGCATTCCTCCGGACCAACA 282275
Query 110395 AAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAACAT 110454
|| || || | ||| || || ||||| ||||||| | | ||| |||| |||||||||||
Sbjct 282274 GAGGCTCATATTTGCTGGCAAGCAGCTAGAGGATGGCCGGACATTGGCCGATTACAACAT 282215
Query 110455 TCAAAAAGAATCTAC 110469
||||| || |||||
Sbjct 282214 CCAAAAGGAGTCTAC 282200
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 412496750573234
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |