Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Aegilops_20tauschii_20subsp._20tauschii_20[refseq_20GCF_5F001957025.
1_202017-01-19] 68,538 sequences; 4,327,321,625 total letters
Query= NC_023177.1
Length=124688
Score E
Sequences producing significant alignments: (Bits) Value
seq56450 95.1 1e-14
seq17562 91.5 1e-13
seq56172 86.0 5e-12
seq35365 86.0 5e-12
seq39779 82.4 6e-11
seq16495 82.4 6e-11
seq14904 82.4 6e-11
seq4230 82.4 6e-11
>seq56450
Length=374704
Score = 95.1 bits (104), Expect = 1e-14
Identities = 147/210 (70%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615
||||| ||||||||||| || | || ||||| ||||| ||| | || |||| |
Sbjct 247595 ATGCAGATTTTTGTCAAGACGCTCACCGGCAAGACCATCACCCTGGAGGTGGAGTCCTCG 247654
Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675
|| || ||| | | || || ||||| ||||| || ||| | ||| ||| |||
Sbjct 247655 GACACCATCGACAATGTGAAGGCCAAGATCCAGGATAAGGAGGGCATTCCCCCGGACCAG 247714
Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735
||| | || || | || || || ||||||||||| | | || |||| |||||||||
Sbjct 247715 CAGCGTCTCATCTTCGCTGGCAAGCAGCTGGAGGATGGCCGCACCCTGGCAGACTACAAC 247774
Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTG 107765
|| || ||||||||||| | ||| |||||
Sbjct 247775 ATCCAGAAGGAGTCTACCCTTCACCTGGTG 247804
>seq17562
Length=36101
Score = 91.5 bits (100), Expect = 1e-13
Identities = 146/210 (70%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615
||||| || |||||||| || | || ||||| ||||| ||| | || |||| |
Sbjct 6037 ATGCAGATCTTTGTCAAGACCCTCACCGGCAAGACCATCACCTTGGAGGTGGAGTCCTCG 6096
Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675
|| || ||| | | || || ||||| || || || ||| | ||| ||| |||
Sbjct 6097 GACACCATCGACAATGTGAAGGCGAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAG 6156
Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735
||| | || |||| ||| || || ||||| ||||| | | ||| |||| |||||||||
Sbjct 6157 CAGCGTCTGATTTTTGCCGGCAAGCAGCTCGAGGATGGCCGCACACTGGCTGACTACAAC 6216
Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTG 107765
|| || |||||||| || | ||| |||||
Sbjct 6217 ATCCAGAAGGAGTCCACCCTCCACCTGGTG 6246
Score = 91.5 bits (100), Expect = 1e-13
Identities = 146/210 (70%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615
||||| ||||||||||| || | || ||||| ||||| ||| | || |||| |
Sbjct 6721 ATGCAGATTTTTGTCAAGACGCTCACCGGCAAGACCATCACCCTGGAGGTGGAGTCCTCG 6780
Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675
|| || ||| | | || || ||||| || || || || | ||| ||| |||
Sbjct 6781 GACACCATCGACAATGTGAAGGCCAAGATCCAGGACAAGGAGGGTATCCCCCCGGACCAG 6840
Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735
||| | || || | ||| || || ||||||||||| | | || |||| |||||||||
Sbjct 6841 CAGCGCCTCATCTTTGCTGGCAAGCAGCTGGAGGATGGCCGCACCCTGGCAGACTACAAC 6900
Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTG 107765
|| || ||||||||||| | ||| |||||
Sbjct 6901 ATCCAGAAGGAGTCTACCCTTCACCTGGTG 6930
>seq56172
Length=445662
Score = 86.0 bits (94), Expect = 5e-12
Identities = 148/215 (69%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615
||||| || ||||| || || | |||||||| ||||| ||| |||| ||| |
Sbjct 384827 ATGCAGATCTTTGTGAAGACCCTGACAGGCAAGACCATCACCCTCGAGGTTGAGTCCTCA 384886
Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675
|| || ||| | | || || ||||| || || || ||| | || |||||||
Sbjct 384887 GACACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCTCCGGATCAG 384946
Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735
||| | || || | ||| || || ||||| ||||| | | || |||| |||||||||
Sbjct 384947 CAGCGTCTCATCTTTGCCGGCAAGCAGCTTGAGGATGGCCGGACCTTGGCCGACTACAAC 385006
Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAG 107770
|| || |||||||| || | ||| ||||| ||||
Sbjct 385007 ATCCAGAAGGAGTCCACACTCCACCTGGTGCTGAG 385041
Score = 86.0 bits (94), Expect = 5e-12
Identities = 145/210 (69%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615
||||| ||||| ||||| || | || ||||| ||||| ||| | || ||| |
Sbjct 386418 ATGCAGATTTTCGTCAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTCGAGTCATCT 386477
Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675
|| || ||| | | || || ||||| || || || ||| | ||| ||| |||
Sbjct 386478 GACACCATCGACAATGTGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAG 386537
Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735
||| | ||||| | ||| ||||| ||||| ||||| | | || | ||||||||||||
Sbjct 386538 CAGCGTCTTATCTTTGCCGGTAAGCAGCTTGAGGATGGCCGCACCCTTGCGGACTACAAC 386597
Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTG 107765
|| ||||||||||| || | ||| | |||
Sbjct 386598 ATCCAAAAGGAGTCCACCCTCCACCTTGTG 386627
Score = 82.4 bits (90), Expect = 6e-11
Identities = 144/210 (69%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615
||||| || ||||| || || | || ||||| ||||| ||| | || |||| |
Sbjct 408942 ATGCAGATATTTGTGAAGACCCTCACCGGCAAGACCATCACCCTGGAGGTGGAGTCATCT 409001
Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675
|| || | | | | || || ||||| || || || ||| | ||| ||| |||
Sbjct 409002 GACACCATTGACAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAG 409061
Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735
||| | || || | ||| ||||| ||||| ||||| | | || ||||||||||||||
Sbjct 409062 CAGCGTCTCATCTTTGCCGGTAAGCAGCTTGAGGATGGCCGCACCTTGGCGGACTACAAC 409121
Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTG 107765
|| || |||||||| || | ||| |||||
Sbjct 409122 ATCCAGAAGGAGTCCACCCTTCACTTGGTG 409151
>seq35365
Length=683187
Score = 86.0 bits (94), Expect = 5e-12
Identities = 155/227 (68%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615
||||| || ||||| || || | || ||||| ||||| ||| | || |||| |
Sbjct 518776 ATGCAGATCTTTGTGAAGACACTCACGGGCAAGACCATCACCCTTGAGGTGGAGTCGTCT 518717
Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675
|| || ||| | | || || ||||| || || || ||| | ||| ||| |||
Sbjct 518716 GACACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAG 518657
Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735
||| | ||||| | || || || ||||||||||||| | || | || |||||||||
Sbjct 518656 CAGCGCCTTATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGCACCCTTGCCGACTACAAC 518597
Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGG 107782
|| || |||||||| || | ||| ||||| || | |||| || ||
Sbjct 518596 ATCCAGAAGGAGTCCACTCTCCACCTGGTGCTGCGCCTGCGTGGCGG 518550
>seq39779
Length=478605
Score = 82.4 bits (90), Expect = 6e-11
Identities = 144/210 (69%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615
||||| || || ||||| || | || ||||| ||||| || | || |||| |
Sbjct 441876 ATGCAGATCTTCGTCAAGACCCTGACGGGCAAGACCATCACTCTGGAGGTGGAGTCCTCG 441817
Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675
|| || ||| | | || || ||||| || || || ||| | ||| ||| |||
Sbjct 441816 GACACCATCGACAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAG 441757
Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735
||| | || || | ||| ||||| ||||| ||||| | | || |||| |||||||||
Sbjct 441756 CAGCGTCTCATCTTTGCTGGTAAGCAGCTTGAGGATGGCCGCACTCTGGCAGACTACAAC 441697
Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTG 107765
|| || ||||||||||| | ||| |||||
Sbjct 441696 ATCCAGAAGGAGTCTACCCTTCACTTGGTG 441667
>seq16495
Length=532983
Score = 82.4 bits (90), Expect = 6e-11
Identities = 145/210 (69%), Gaps = 1/210 (0%)
Strand=Plus/Plus
Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615
||||| || |||||||| || || || ||||| ||||| ||| | ||| ||| ||
Sbjct 85663 ATGCAGATCTTTGTCAAGACATTGACTGGCAAGACCATCACCCTGGAAGTGGAATCTTCA 85722
Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675
|| || ||| | | || || ||||| || || || ||| | ||| ||| |||
Sbjct 85723 GACACCATCGAC-ACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAG 85781
Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735
|| | || || | ||| ||||| ||||| ||||| | || |||| || || |||
Sbjct 85782 CAACGCCTGATCTTTGCTGGTAAGCAGCTTGAGGATGGTCGCACTCTGGCTGATTATAAC 85841
Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTG 107765
||||| ||||||||||| | ||| |||||
Sbjct 85842 ATTCAGAAGGAGTCTACCCTCCACCTGGTG 85871
>seq14904
Length=321791
Score = 82.4 bits (90), Expect = 6e-11
Identities = 144/210 (69%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615
||||| || || || ||||| | || ||||| ||||||||| | || ||| ||
Sbjct 31167 ATGCAGATCTTCGTGAAAACCCTCACCGGCAAGACCATTACCCTAGAGGTCGAGTCTTCG 31226
Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675
||||| | | | | || || ||||| || || || ||| | || ||| |||
Sbjct 31227 GATACGATTGACAATGTGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCTCCGGACCAG 31286
Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735
||||| | || | |||||| || ||||| ||||| | || ||||||| ||||||
Sbjct 31287 CAGAGGTTGATCTTTGCGGGCAAGCAGCTTGAGGATGGTCGCACCCTGGCGGATTACAAC 31346
Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTG 107765
||||| ||||||||||| | || |||||
Sbjct 31347 ATTCAGAAGGAGTCTACTCTCCATCTGGTG 31376
>seq4230
Length=34917
Score = 82.4 bits (90), Expect = 6e-11
Identities = 144/210 (69%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615
||||| || || ||||| || | || ||||| ||||| || | || |||| |
Sbjct 31611 ATGCAGATCTTCGTCAAGACCCTGACGGGCAAGACCATCACTCTGGAGGTGGAGTCCTCG 31552
Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675
|| || ||| | | || || ||||| || || || ||| | ||| ||| |||
Sbjct 31551 GACACCATCGACAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAG 31492
Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735
||| | || || | ||| ||||| ||||| ||||| | | || |||| |||||||||
Sbjct 31491 CAGCGTCTCATCTTTGCTGGTAAGCAGCTTGAGGATGGCCGCACTCTGGCAGACTACAAC 31432
Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTG 107765
|| || ||||||||||| | ||| |||||
Sbjct 31431 ATCCAGAAGGAGTCTACCCTTCACTTGGTG 31402
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 398543615466682
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |