Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aegilops_20tauschii_20subsp._20tauschii_20[refseq_20GCF_5F001957025. 1_202017-01-19] 68,538 sequences; 4,327,321,625 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq56450 95.1 1e-14 seq17562 91.5 1e-13 seq56172 86.0 5e-12 seq35365 86.0 5e-12 seq39779 82.4 6e-11 seq16495 82.4 6e-11 seq14904 82.4 6e-11 seq4230 82.4 6e-11 >seq56450 Length=374704 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| ||||||||||| || | || ||||| ||||| ||| | || |||| | Sbjct 247595 ATGCAGATTTTTGTCAAGACGCTCACCGGCAAGACCATCACCCTGGAGGTGGAGTCCTCG 247654 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || ||| | | || || ||||| ||||| || ||| | ||| ||| ||| Sbjct 247655 GACACCATCGACAATGTGAAGGCCAAGATCCAGGATAAGGAGGGCATTCCCCCGGACCAG 247714 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||| | || || | || || || ||||||||||| | | || |||| ||||||||| Sbjct 247715 CAGCGTCTCATCTTCGCTGGCAAGCAGCTGGAGGATGGCCGCACCCTGGCAGACTACAAC 247774 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 || || ||||||||||| | ||| ||||| Sbjct 247775 ATCCAGAAGGAGTCTACCCTTCACCTGGTG 247804 >seq17562 Length=36101 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || |||||||| || | || ||||| ||||| ||| | || |||| | Sbjct 6037 ATGCAGATCTTTGTCAAGACCCTCACCGGCAAGACCATCACCTTGGAGGTGGAGTCCTCG 6096 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || ||| | | || || ||||| || || || ||| | ||| ||| ||| Sbjct 6097 GACACCATCGACAATGTGAAGGCGAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAG 6156 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||| | || |||| ||| || || ||||| ||||| | | ||| |||| ||||||||| Sbjct 6157 CAGCGTCTGATTTTTGCCGGCAAGCAGCTCGAGGATGGCCGCACACTGGCTGACTACAAC 6216 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 || || |||||||| || | ||| ||||| Sbjct 6217 ATCCAGAAGGAGTCCACCCTCCACCTGGTG 6246 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| ||||||||||| || | || ||||| ||||| ||| | || |||| | Sbjct 6721 ATGCAGATTTTTGTCAAGACGCTCACCGGCAAGACCATCACCCTGGAGGTGGAGTCCTCG 6780 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || ||| | | || || ||||| || || || || | ||| ||| ||| Sbjct 6781 GACACCATCGACAATGTGAAGGCCAAGATCCAGGACAAGGAGGGTATCCCCCCGGACCAG 6840 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||| | || || | ||| || || ||||||||||| | | || |||| ||||||||| Sbjct 6841 CAGCGCCTCATCTTTGCTGGCAAGCAGCTGGAGGATGGCCGCACCCTGGCAGACTACAAC 6900 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 || || ||||||||||| | ||| ||||| Sbjct 6901 ATCCAGAAGGAGTCTACCCTTCACCTGGTG 6930 >seq56172 Length=445662 Score = 86.0 bits (94), Expect = 5e-12 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || ||||| || || | |||||||| ||||| ||| |||| ||| | Sbjct 384827 ATGCAGATCTTTGTGAAGACCCTGACAGGCAAGACCATCACCCTCGAGGTTGAGTCCTCA 384886 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || ||| | | || || ||||| || || || ||| | || ||||||| Sbjct 384887 GACACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCTCCGGATCAG 384946 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||| | || || | ||| || || ||||| ||||| | | || |||| ||||||||| Sbjct 384947 CAGCGTCTCATCTTTGCCGGCAAGCAGCTTGAGGATGGCCGGACCTTGGCCGACTACAAC 385006 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAG 107770 || || |||||||| || | ||| ||||| |||| Sbjct 385007 ATCCAGAAGGAGTCCACACTCCACCTGGTGCTGAG 385041 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| ||||| ||||| || | || ||||| ||||| ||| | || ||| | Sbjct 386418 ATGCAGATTTTCGTCAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTCGAGTCATCT 386477 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || ||| | | || || ||||| || || || ||| | ||| ||| ||| Sbjct 386478 GACACCATCGACAATGTGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAG 386537 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||| | ||||| | ||| ||||| ||||| ||||| | | || | |||||||||||| Sbjct 386538 CAGCGTCTTATCTTTGCCGGTAAGCAGCTTGAGGATGGCCGCACCCTTGCGGACTACAAC 386597 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 || ||||||||||| || | ||| | ||| Sbjct 386598 ATCCAAAAGGAGTCCACCCTCCACCTTGTG 386627 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || ||||| || || | || ||||| ||||| ||| | || |||| | Sbjct 408942 ATGCAGATATTTGTGAAGACCCTCACCGGCAAGACCATCACCCTGGAGGTGGAGTCATCT 409001 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || | | | | || || ||||| || || || ||| | ||| ||| ||| Sbjct 409002 GACACCATTGACAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAG 409061 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||| | || || | ||| ||||| ||||| ||||| | | || |||||||||||||| Sbjct 409062 CAGCGTCTCATCTTTGCCGGTAAGCAGCTTGAGGATGGCCGCACCTTGGCGGACTACAAC 409121 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 || || |||||||| || | ||| ||||| Sbjct 409122 ATCCAGAAGGAGTCCACCCTTCACTTGGTG 409151 >seq35365 Length=683187 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || ||||| || || | || ||||| ||||| ||| | || |||| | Sbjct 518776 ATGCAGATCTTTGTGAAGACACTCACGGGCAAGACCATCACCCTTGAGGTGGAGTCGTCT 518717 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || ||| | | || || ||||| || || || ||| | ||| ||| ||| Sbjct 518716 GACACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAG 518657 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||| | ||||| | || || || ||||||||||||| | || | || ||||||||| Sbjct 518656 CAGCGCCTTATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGCACCCTTGCCGACTACAAC 518597 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGG 107782 || || |||||||| || | ||| ||||| || | |||| || || Sbjct 518596 ATCCAGAAGGAGTCCACTCTCCACCTGGTGCTGCGCCTGCGTGGCGG 518550 >seq39779 Length=478605 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || || ||||| || | || ||||| ||||| || | || |||| | Sbjct 441876 ATGCAGATCTTCGTCAAGACCCTGACGGGCAAGACCATCACTCTGGAGGTGGAGTCCTCG 441817 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || ||| | | || || ||||| || || || ||| | ||| ||| ||| Sbjct 441816 GACACCATCGACAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAG 441757 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||| | || || | ||| ||||| ||||| ||||| | | || |||| ||||||||| Sbjct 441756 CAGCGTCTCATCTTTGCTGGTAAGCAGCTTGAGGATGGCCGCACTCTGGCAGACTACAAC 441697 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 || || ||||||||||| | ||| ||||| Sbjct 441696 ATCCAGAAGGAGTCTACCCTTCACTTGGTG 441667 >seq16495 Length=532983 Score = 82.4 bits (90), Expect = 6e-11 Identities = 145/210 (69%), Gaps = 1/210 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || |||||||| || || || ||||| ||||| ||| | ||| ||| || Sbjct 85663 ATGCAGATCTTTGTCAAGACATTGACTGGCAAGACCATCACCCTGGAAGTGGAATCTTCA 85722 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || ||| | | || || ||||| || || || ||| | ||| ||| ||| Sbjct 85723 GACACCATCGAC-ACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAG 85781 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 || | || || | ||| ||||| ||||| ||||| | || |||| || || ||| Sbjct 85782 CAACGCCTGATCTTTGCTGGTAAGCAGCTTGAGGATGGTCGCACTCTGGCTGATTATAAC 85841 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 ||||| ||||||||||| | ||| ||||| Sbjct 85842 ATTCAGAAGGAGTCTACCCTCCACCTGGTG 85871 >seq14904 Length=321791 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || || || ||||| | || ||||| ||||||||| | || ||| || Sbjct 31167 ATGCAGATCTTCGTGAAAACCCTCACCGGCAAGACCATTACCCTAGAGGTCGAGTCTTCG 31226 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 ||||| | | | | || || ||||| || || || ||| | || ||| ||| Sbjct 31227 GATACGATTGACAATGTGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCTCCGGACCAG 31286 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||||| | || | |||||| || ||||| ||||| | || ||||||| |||||| Sbjct 31287 CAGAGGTTGATCTTTGCGGGCAAGCAGCTTGAGGATGGTCGCACCCTGGCGGATTACAAC 31346 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 ||||| ||||||||||| | || ||||| Sbjct 31347 ATTCAGAAGGAGTCTACTCTCCATCTGGTG 31376 >seq4230 Length=34917 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || || ||||| || | || ||||| ||||| || | || |||| | Sbjct 31611 ATGCAGATCTTCGTCAAGACCCTGACGGGCAAGACCATCACTCTGGAGGTGGAGTCCTCG 31552 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || ||| | | || || ||||| || || || ||| | ||| ||| ||| Sbjct 31551 GACACCATCGACAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAG 31492 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||| | || || | ||| ||||| ||||| ||||| | | || |||| ||||||||| Sbjct 31491 CAGCGTCTCATCTTTGCTGGTAAGCAGCTTGAGGATGGCCGCACTCTGGCAGACTACAAC 31432 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 || || ||||||||||| | ||| ||||| Sbjct 31431 ATCCAGAAGGAGTCTACCCTTCACTTGGTG 31402 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398543615466682