Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aegilops_20tauschii_20subsp._20tauschii_20[refseq_20GCF_5F001957025. 1_202017-01-19] 68,538 sequences; 4,327,321,625 total letters Query= NC_023549.1 Length=56789 Score E Sequences producing significant alignments: (Bits) Value seq68538 86.0 2e-12 seq68353 86.0 2e-12 seq68116 86.0 2e-12 seq58498 86.0 2e-12 seq34725 86.0 2e-12 seq29563 86.0 2e-12 seq29152 86.0 2e-12 seq15112 86.0 2e-12 seq9995 86.0 2e-12 seq6963 86.0 2e-12 seq68117 82.4 3e-11 seq67459 80.6 1e-10 seq57906 80.6 1e-10 seq56574 80.6 1e-10 seq54090 80.6 1e-10 seq53963 80.6 1e-10 seq51578 80.6 1e-10 seq51241 80.6 1e-10 seq47400 80.6 1e-10 seq47332 80.6 1e-10 seq41886 80.6 1e-10 seq40799 80.6 1e-10 seq31309 80.6 1e-10 seq31253 80.6 1e-10 seq27609 80.6 1e-10 seq27367 80.6 1e-10 seq18935 80.6 1e-10 seq18669 80.6 1e-10 seq13842 80.6 1e-10 seq9533 80.6 1e-10 >seq68538 Length=114112 Score = 86.0 bits (94), Expect = 2e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 50112 TGCGGAGGCGGGATTTGAACCCGCGGCCTCCAGGATATGAGCCTGGCGAGCTACCGAACT 50171 ||||||| ||||| | ||||||| | |||| ||| ||||||||| | |||||||| |||| Sbjct 12720 TGCGGAGACGGGAATCGAACCCGTGACCTCAAGGTTATGAGCCTCGTGAGCTACCAAACT 12779 Query 50172 GCTCTACTCCGC 50183 |||||||||||| Sbjct 12780 GCTCTACTCCGC 12791 >seq68353 Length=2276501 Score = 86.0 bits (94), Expect = 2e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 50112 TGCGGAGGCGGGATTTGAACCCGCGGCCTCCAGGATATGAGCCTGGCGAGCTACCGAACT 50171 ||||||| ||||| | ||||||| | |||| ||| ||||||||| | |||||||| |||| Sbjct 1826770 TGCGGAGACGGGAATCGAACCCGTGACCTCAAGGTTATGAGCCTCGTGAGCTACCAAACT 1826711 Query 50172 GCTCTACTCCGC 50183 |||||||||||| Sbjct 1826710 GCTCTACTCCGC 1826699 >seq68116 Length=3596336 Score = 86.0 bits (94), Expect = 2e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 50112 TGCGGAGGCGGGATTTGAACCCGCGGCCTCCAGGATATGAGCCTGGCGAGCTACCGAACT 50171 ||||||| ||||| | ||||||| | |||| ||| ||||||||| | |||||||| |||| Sbjct 994941 TGCGGAGACGGGAATCGAACCCGTGACCTCAAGGTTATGAGCCTCGTGAGCTACCAAACT 994882 Query 50172 GCTCTACTCCGC 50183 |||||||||||| Sbjct 994881 GCTCTACTCCGC 994870 >seq58498 Length=34119 Score = 86.0 bits (94), Expect = 2e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 50112 TGCGGAGGCGGGATTTGAACCCGCGGCCTCCAGGATATGAGCCTGGCGAGCTACCGAACT 50171 ||||||| ||||| | ||||||| | |||| ||| ||||||||| | |||||||| |||| Sbjct 19228 TGCGGAGACGGGAATCGAACCCGTGACCTCAAGGTTATGAGCCTCGTGAGCTACCAAACT 19169 Query 50172 GCTCTACTCCGC 50183 |||||||||||| Sbjct 19168 GCTCTACTCCGC 19157 >seq34725 Length=1886439 Score = 86.0 bits (94), Expect = 2e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 50112 TGCGGAGGCGGGATTTGAACCCGCGGCCTCCAGGATATGAGCCTGGCGAGCTACCGAACT 50171 ||||||| ||||| | ||||||| | |||| ||| ||||||||| | |||||||| |||| Sbjct 1867407 TGCGGAGACGGGAATCGAACCCGTGACCTCAAGGTTATGAGCCTCGTGAGCTACCAAACT 1867348 Query 50172 GCTCTACTCCGC 50183 |||||||||||| Sbjct 1867347 GCTCTACTCCGC 1867336 >seq29563 Length=3194 Score = 86.0 bits (94), Expect = 2e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 50112 TGCGGAGGCGGGATTTGAACCCGCGGCCTCCAGGATATGAGCCTGGCGAGCTACCGAACT 50171 ||||||| ||||| | ||||||| | |||| ||| ||||||||| | |||||||| |||| Sbjct 77 TGCGGAGACGGGAATCGAACCCGTGACCTCAAGGTTATGAGCCTCGTGAGCTACCAAACT 18 Query 50172 GCTCTACTCCGC 50183 |||||||||||| Sbjct 17 GCTCTACTCCGC 6 >seq29152 Length=10424 Score = 86.0 bits (94), Expect = 2e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 50112 TGCGGAGGCGGGATTTGAACCCGCGGCCTCCAGGATATGAGCCTGGCGAGCTACCGAACT 50171 ||||||| ||||| | ||||||| | |||| ||| ||||||||| | |||||||| |||| Sbjct 6122 TGCGGAGACGGGAATCGAACCCGTGACCTCAAGGTTATGAGCCTCGTGAGCTACCAAACT 6181 Query 50172 GCTCTACTCCGC 50183 |||||||||||| Sbjct 6182 GCTCTACTCCGC 6193 >seq15112 Length=649736 Score = 86.0 bits (94), Expect = 2e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 50112 TGCGGAGGCGGGATTTGAACCCGCGGCCTCCAGGATATGAGCCTGGCGAGCTACCGAACT 50171 ||||||| ||||| | ||||||| | |||| ||| ||||||||| | |||||||| |||| Sbjct 337567 TGCGGAGACGGGAATCGAACCCGTGACCTCAAGGTTATGAGCCTCGTGAGCTACCAAACT 337508 Query 50172 GCTCTACTCCGC 50183 |||||||||||| Sbjct 337507 GCTCTACTCCGC 337496 >seq9995 Length=12055 Score = 86.0 bits (94), Expect = 2e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 50112 TGCGGAGGCGGGATTTGAACCCGCGGCCTCCAGGATATGAGCCTGGCGAGCTACCGAACT 50171 ||||||| ||||| | ||||||| | |||| ||| ||||||||| | |||||||| |||| Sbjct 8598 TGCGGAGACGGGAATCGAACCCGTGACCTCAAGGTTATGAGCCTCGTGAGCTACCAAACT 8657 Query 50172 GCTCTACTCCGC 50183 |||||||||||| Sbjct 8658 GCTCTACTCCGC 8669 >seq6963 Length=16478 Score = 86.0 bits (94), Expect = 2e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 50112 TGCGGAGGCGGGATTTGAACCCGCGGCCTCCAGGATATGAGCCTGGCGAGCTACCGAACT 50171 ||||||| ||||| | ||||||| | |||| ||| ||||||||| | |||||||| |||| Sbjct 4166 TGCGGAGACGGGAATCGAACCCGTGACCTCAAGGTTATGAGCCTCGTGAGCTACCAAACT 4107 Query 50172 GCTCTACTCCGC 50183 |||||||||||| Sbjct 4106 GCTCTACTCCGC 4095 >seq68117 Length=3308475 Score = 82.4 bits (90), Expect = 3e-11 Identities = 60/70 (86%), Gaps = 0/70 (0%) Strand=Plus/Minus Query 50112 TGCGGAGGCGGGATTTGAACCCGCGGCCTCCAGGATATGAGCCTGGCGAGCTACCGAACT 50171 ||||||| ||||| | ||||||| | |||| ||| ||||||||| | |||||||| |||| Sbjct 1939452 TGCGGAGACGGGAATCGAACCCGTGACCTCAAGGTTATGAGCCTCGTGAGCTACCAAACT 1939393 Query 50172 GCTCTACTCC 50181 |||||||||| Sbjct 1939392 GCTCTACTCC 1939383 >seq67459 Length=23691 Score = 80.6 bits (88), Expect = 1e-10 Identities = 61/72 (85%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 50112 TGCGGAGGCGGGATTTGAACCCGCGGCCTCCAGGATATGAGCCTGGCGAGCTACCGAACT 50171 ||||||| ||||| | |||||| | |||| ||| ||||||||| | |||||||| |||| Sbjct 1423 TGCGGAGACGGGAATCGAACCCATGACCTCAAGGTTATGAGCCTCGTGAGCTACCAAACT 1364 Query 50172 GCTCTACTCCGC 50183 |||||||||||| Sbjct 1363 GCTCTACTCCGC 1352 Score = 80.6 bits (88), Expect = 1e-10 Identities = 61/72 (85%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 50112 TGCGGAGGCGGGATTTGAACCCGCGGCCTCCAGGATATGAGCCTGGCGAGCTACCGAACT 50171 ||||||| ||||| | |||||| | |||| ||| ||||||||| | |||||||| |||| Sbjct 22151 TGCGGAGACGGGAATCGAACCCATGACCTCAAGGTTATGAGCCTCGTGAGCTACCAAACT 22210 Query 50172 GCTCTACTCCGC 50183 |||||||||||| Sbjct 22211 GCTCTACTCCGC 22222 >seq57906 Length=39851 Score = 80.6 bits (88), Expect = 1e-10 Identities = 61/72 (85%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 50112 TGCGGAGGCGGGATTTGAACCCGCGGCCTCCAGGATATGAGCCTGGCGAGCTACCGAACT 50171 ||||||| ||||| | |||||| | |||| ||| ||||||||| | |||||||| |||| Sbjct 10390 TGCGGAGACGGGAATCGAACCCATGACCTCAAGGTTATGAGCCTCGTGAGCTACCAAACT 10331 Query 50172 GCTCTACTCCGC 50183 |||||||||||| Sbjct 10330 GCTCTACTCCGC 10319 >seq56574 Length=20199 Score = 80.6 bits (88), Expect = 1e-10 Identities = 61/72 (85%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 50112 TGCGGAGGCGGGATTTGAACCCGCGGCCTCCAGGATATGAGCCTGGCGAGCTACCGAACT 50171 ||||||| ||||| | |||||| | |||| ||| ||||||||| | |||||||| |||| Sbjct 11881 TGCGGAGACGGGAATCGAACCCATGACCTCAAGGTTATGAGCCTCGTGAGCTACCAAACT 11940 Query 50172 GCTCTACTCCGC 50183 |||||||||||| Sbjct 11941 GCTCTACTCCGC 11952 >seq54090 Length=35493 Score = 80.6 bits (88), Expect = 1e-10 Identities = 61/72 (85%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 50112 TGCGGAGGCGGGATTTGAACCCGCGGCCTCCAGGATATGAGCCTGGCGAGCTACCGAACT 50171 ||||||| ||||| | |||||| | |||| ||| ||||||||| | |||||||| |||| Sbjct 7549 TGCGGAGACGGGAATCGAACCCATGACCTCAAGGTTATGAGCCTCGTGAGCTACCAAACT 7608 Query 50172 GCTCTACTCCGC 50183 |||||||||||| Sbjct 7609 GCTCTACTCCGC 7620 >seq53963 Length=25380 Score = 80.6 bits (88), Expect = 1e-10 Identities = 61/72 (85%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 50112 TGCGGAGGCGGGATTTGAACCCGCGGCCTCCAGGATATGAGCCTGGCGAGCTACCGAACT 50171 ||||||| ||||| | |||||| | |||| ||| ||||||||| | |||||||| |||| Sbjct 9165 TGCGGAGACGGGAATCGAACCCATGACCTCAAGGTTATGAGCCTCGTGAGCTACCAAACT 9106 Query 50172 GCTCTACTCCGC 50183 |||||||||||| Sbjct 9105 GCTCTACTCCGC 9094 >seq51578 Length=7691 Score = 80.6 bits (88), Expect = 1e-10 Identities = 61/72 (85%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 50112 TGCGGAGGCGGGATTTGAACCCGCGGCCTCCAGGATATGAGCCTGGCGAGCTACCGAACT 50171 ||||||| ||||| | |||||| | |||| ||| ||||||||| | |||||||| |||| Sbjct 2649 TGCGGAGACGGGAATCGAACCCATGACCTCAAGGTTATGAGCCTCGTGAGCTACCAAACT 2708 Query 50172 GCTCTACTCCGC 50183 |||||||||||| Sbjct 2709 GCTCTACTCCGC 2720 >seq51241 Length=22806 Score = 80.6 bits (88), Expect = 1e-10 Identities = 61/72 (85%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 50112 TGCGGAGGCGGGATTTGAACCCGCGGCCTCCAGGATATGAGCCTGGCGAGCTACCGAACT 50171 ||||||| ||||| | |||||| | |||| ||| ||||||||| | |||||||| |||| Sbjct 17293 TGCGGAGACGGGAATCGAACCCATGACCTCAAGGTTATGAGCCTCGTGAGCTACCAAACT 17352 Query 50172 GCTCTACTCCGC 50183 |||||||||||| Sbjct 17353 GCTCTACTCCGC 17364 >seq47400 Length=50917 Score = 80.6 bits (88), Expect = 1e-10 Identities = 61/72 (85%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 50112 TGCGGAGGCGGGATTTGAACCCGCGGCCTCCAGGATATGAGCCTGGCGAGCTACCGAACT 50171 ||||||| ||||| | |||||| | |||| ||| ||||||||| | |||||||| |||| Sbjct 13931 TGCGGAGACGGGAATCGAACCCATGACCTCAAGGTTATGAGCCTCGTGAGCTACCAAACT 13872 Query 50172 GCTCTACTCCGC 50183 |||||||||||| Sbjct 13871 GCTCTACTCCGC 13860 >seq47332 Length=37536 Score = 80.6 bits (88), Expect = 1e-10 Identities = 61/72 (85%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 50112 TGCGGAGGCGGGATTTGAACCCGCGGCCTCCAGGATATGAGCCTGGCGAGCTACCGAACT 50171 ||||||| ||||| | |||||| | |||| ||| ||||||||| | |||||||| |||| Sbjct 35827 TGCGGAGACGGGAATCGAACCCATGACCTCAAGGTTATGAGCCTCGTGAGCTACCAAACT 35886 Query 50172 GCTCTACTCCGC 50183 |||||||||||| Sbjct 35887 GCTCTACTCCGC 35898 >seq41886 Length=41712 Score = 80.6 bits (88), Expect = 1e-10 Identities = 61/72 (85%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 50112 TGCGGAGGCGGGATTTGAACCCGCGGCCTCCAGGATATGAGCCTGGCGAGCTACCGAACT 50171 ||||||| ||||| | |||||| | |||| ||| ||||||||| | |||||||| |||| Sbjct 24428 TGCGGAGACGGGAATCGAACCCATGACCTCAAGGTTATGAGCCTCGTGAGCTACCAAACT 24369 Query 50172 GCTCTACTCCGC 50183 |||||||||||| Sbjct 24368 GCTCTACTCCGC 24357 >seq40799 Length=7435 Score = 80.6 bits (88), Expect = 1e-10 Identities = 61/72 (85%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 50112 TGCGGAGGCGGGATTTGAACCCGCGGCCTCCAGGATATGAGCCTGGCGAGCTACCGAACT 50171 ||||||| ||||| | |||||| | |||| ||| ||||||||| | |||||||| |||| Sbjct 495 TGCGGAGACGGGAATCGAACCCATGACCTCAAGGTTATGAGCCTCGTGAGCTACCAAACT 436 Query 50172 GCTCTACTCCGC 50183 |||||||||||| Sbjct 435 GCTCTACTCCGC 424 >seq31309 Length=10666 Score = 80.6 bits (88), Expect = 1e-10 Identities = 61/72 (85%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 50112 TGCGGAGGCGGGATTTGAACCCGCGGCCTCCAGGATATGAGCCTGGCGAGCTACCGAACT 50171 ||||||| ||||| | |||||| | |||| ||| ||||||||| | |||||||| |||| Sbjct 6160 TGCGGAGACGGGAATCGAACCCATGACCTCAAGGTTATGAGCCTCGTGAGCTACCAAACT 6219 Query 50172 GCTCTACTCCGC 50183 |||||||||||| Sbjct 6220 GCTCTACTCCGC 6231 >seq31253 Length=20747 Score = 80.6 bits (88), Expect = 1e-10 Identities = 61/72 (85%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 50112 TGCGGAGGCGGGATTTGAACCCGCGGCCTCCAGGATATGAGCCTGGCGAGCTACCGAACT 50171 ||||||| ||||| | |||||| | |||| ||| ||||||||| | |||||||| |||| Sbjct 15133 TGCGGAGACGGGAATCGAACCCATGACCTCAAGGTTATGAGCCTCGTGAGCTACCAAACT 15192 Query 50172 GCTCTACTCCGC 50183 |||||||||||| Sbjct 15193 GCTCTACTCCGC 15204 >seq27609 Length=16448 Score = 80.6 bits (88), Expect = 1e-10 Identities = 61/72 (85%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 50112 TGCGGAGGCGGGATTTGAACCCGCGGCCTCCAGGATATGAGCCTGGCGAGCTACCGAACT 50171 ||||||| ||||| | |||||| | |||| ||| ||||||||| | |||||||| |||| Sbjct 11296 TGCGGAGACGGGAATCGAACCCATGACCTCAAGGTTATGAGCCTCGTGAGCTACCAAACT 11355 Query 50172 GCTCTACTCCGC 50183 |||||||||||| Sbjct 11356 GCTCTACTCCGC 11367 >seq27367 Length=17126 Score = 80.6 bits (88), Expect = 1e-10 Identities = 61/72 (85%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 50112 TGCGGAGGCGGGATTTGAACCCGCGGCCTCCAGGATATGAGCCTGGCGAGCTACCGAACT 50171 ||||||| ||||| | |||||| | |||| ||| ||||||||| | |||||||| |||| Sbjct 13494 TGCGGAGACGGGAATCGAACCCATGACCTCAAGGTTATGAGCCTCGTGAGCTACCAAACT 13435 Query 50172 GCTCTACTCCGC 50183 |||||||||||| Sbjct 13434 GCTCTACTCCGC 13423 >seq18935 Length=23869 Score = 80.6 bits (88), Expect = 1e-10 Identities = 61/72 (85%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 50112 TGCGGAGGCGGGATTTGAACCCGCGGCCTCCAGGATATGAGCCTGGCGAGCTACCGAACT 50171 ||||||| ||||| | |||||| | |||| ||| ||||||||| | |||||||| |||| Sbjct 2432 TGCGGAGACGGGAATCGAACCCATGACCTCAAGGTTATGAGCCTCGTGAGCTACCAAACT 2373 Query 50172 GCTCTACTCCGC 50183 |||||||||||| Sbjct 2372 GCTCTACTCCGC 2361 >seq18669 Length=17634 Score = 80.6 bits (88), Expect = 1e-10 Identities = 61/72 (85%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 50112 TGCGGAGGCGGGATTTGAACCCGCGGCCTCCAGGATATGAGCCTGGCGAGCTACCGAACT 50171 ||||||| ||||| | |||||| | |||| ||| ||||||||| | |||||||| |||| Sbjct 16423 TGCGGAGACGGGAATCGAACCCATGACCTCAAGGTTATGAGCCTCGTGAGCTACCAAACT 16364 Query 50172 GCTCTACTCCGC 50183 |||||||||||| Sbjct 16363 GCTCTACTCCGC 16352 >seq13842 Length=41546 Score = 80.6 bits (88), Expect = 1e-10 Identities = 61/72 (85%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 50112 TGCGGAGGCGGGATTTGAACCCGCGGCCTCCAGGATATGAGCCTGGCGAGCTACCGAACT 50171 ||||||| ||||| | |||||| | |||| ||| ||||||||| | |||||||| |||| Sbjct 22768 TGCGGAGACGGGAATCGAACCCATGACCTCAAGGTTATGAGCCTCGTGAGCTACCAAACT 22827 Query 50172 GCTCTACTCCGC 50183 |||||||||||| Sbjct 22828 GCTCTACTCCGC 22839 >seq9533 Length=8428 Score = 80.6 bits (88), Expect = 1e-10 Identities = 61/72 (85%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 50112 TGCGGAGGCGGGATTTGAACCCGCGGCCTCCAGGATATGAGCCTGGCGAGCTACCGAACT 50171 ||||||| ||||| | |||||| | |||| ||| ||||||||| | |||||||| |||| Sbjct 2010 TGCGGAGACGGGAATCGAACCCATGACCTCAAGGTTATGAGCCTCGTGAGCTACCAAACT 1951 Query 50172 GCTCTACTCCGC 50183 |||||||||||| Sbjct 1950 GCTCTACTCCGC 1939 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 181455395198556