Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aegilops_20tauschii_20subsp._20tauschii_20[refseq_20GCF_5F001957025. 1_202017-01-19] 68,538 sequences; 4,327,321,625 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq58782 122 7e-22 seq54868 113 3e-19 seq37111 113 3e-19 seq15240 113 3e-19 seq59851 107 1e-17 seq35556 87.8 1e-11 seq18401 86.0 5e-11 >seq58782 Length=1261902 Score = 122 bits (134), Expect = 7e-22 Identities = 556/863 (64%), Gaps = 38/863 (4%) Strand=Plus/Minus Query 281633 GGAATTGTTGTGTTTCT----ATCAATAATATTGGTCATAATACCACCAGCTGTTTCTAA 281688 || || |||||||| || ||||| | | ||||| | ||| ||||| || || | Sbjct 1005700 GGGATGGTTGTGTTCCTTGGGATCAAGACT----GTCATTACACCTCCAGCCGTCTCCAG 1005645 Query 281689 ACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATATTTTGAAGTTTTTCATCAGTTTG 281748 |||||||||||||||||||||||| | ||| | | | || | || || | | Sbjct 1005644 ACCAAGAGAAAGAGGAGTGACATCCAATAGCAGCAGGTCCTGGACCTTCTCGTTGCCCTC 1005585 Query 281749 ACCAA-CAAGAATAGCTGCTTGAATAGCAGCACCATATGCAACAGCTTCATCAGGATTAA 281807 ||| ||||| | || || || | ||||| || || |||||||| |||||||| || | Sbjct 1005584 ACCGCTCAAGA-TGGCAGCCTGGACGGCAGCTCCGTAGGCAACAGCCTCATCAGGGTTGA 1005526 Query 281808 --CAGTTTCATTTAGTTTTTTACCATTGAAAAAATTTGAAAGAAGTTGTCTTACCTTAGG 281865 | || || || | || |||||||| || | |||||| || || | || Sbjct 1005525 TGCTCTTGCAG--AGCTCCTTGCCATTGAAGAAGTCCTGAAGAAGCTGCTGCACTCTGGG 1005468 Query 281866 AATACGAGATGATCCTCCAACTAATACAATTTCATGCACCTGTGAT-TTATCCAGTTTTG 281924 ||| | || || || ||||| | |||| || ||||| ||| | || |||| |||| Sbjct 1005467 AATCCTAGTGGAACCACCAACAAGGACAACATCGTGCACG-GTGCTCTTGTCCATCTTTG 1005409 Query 281925 AATCCAATAAAACTTTTTCAACGGGTTCAAGACCAGCTCTAAACAAGTC--TGAACAAAG 281982 ||| ||| || || || || || | || || |||| || || || Sbjct 1005408 CGTCCCTCAAACACTTCTCCACAGGCTCCATACACTTCCTGAACAGATCCATGTTCATC- 1005350 Query 281983 TTCTTCGAATTTAGCTCTAGTAAGAGTGACATTATAA-TCAATTCCTTCGAACAAAGAAT 282041 || || || | || | || | ||| | || || ||||| || || |||| || | Sbjct 1005349 -TCCTCAAACCTGGCACGGGTGATGGTGG-AGTAGAAGTCAATGCCCTCAAACAGCGAGT 1005292 Query 282042 CAACTTCAATCGTAGTTTG---AGTCGAAGAAGATAGTGCACGTTTAGCACGTTCACATG 282098 ||| ||||| || || || ||| || || || ||| | | || || | ||||| | Sbjct 1005291 CAATCTCAATGGTGGTCTGGGCAGTGGAGGA-GAGAGTTCTCTTT--GCCCTCTCACAGG 1005235 Query 282099 CTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATTG--ATTCAAATCTGTTTTATATTTTCT 282156 |||||| || || || | ||| ||| | ||| | | | || | || | || || Sbjct 1005234 ATGTCCTCAGCCTCCGCAGAGCTCTTG--GGTTGCCACTGATGTCCTTCTTGTTCTTCCT 1005177 Query 282157 CTTGAAATCTTCAACACACCATGTTACAAGACGATTATCAAAATCTTCACCTCCCAATTT 282216 |||||| || | |||| | | || | | || ||||| || ||||| || | | Sbjct 1005176 CTTGAACTCCTGAACAAAGTGGTTGACCATCCTGTTGTCAAAGTCCTCACCACCAAGATG 1005117 Query 282217 AGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAAGAGACAAAAGAGTAAC 282276 ||| | || | || ||| | || | ||| | || || |||| | | ||||| || Sbjct 1005116 AGTGTCACCAGCTGTGGCTTTAACCTCGAAGATACCCTCCTCAATGGTGAGAAGAGAGAC 1005057 Query 282277 ATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCT-TGG---- 282331 ||| ||| ||||| || | ||||| || || || ||| | || | ||| Sbjct 1005056 ATCGAAGGTACCACCTCCAAGGTCAAAGATGAGGACGTTCTTCTCACCAACACTGGAAGC 1004997 Query 282332 -TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAAC 282390 || || ||||||||||| |||| |||||||| ||||| ||||| || || | | || Sbjct 1004996 CTTCTTGTCAAGACCATAAGCAATGGCAGCAGCTGTTGGCTCATTGATGATACGGAGGAC 1004937 Query 282391 ATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATA 282450 ||| | |||||||| || ||||| || || || || || || || || || || || Sbjct 1004936 ATTGATGCCAGCAATGACACCAGCATCCTTGGTAGCCTGCCTCTGCGAGTCATTGAAGTA 1004877 Query 282451 TGCAGGAACAGTAATAACGGCAT 282473 |||||| ||||| | ||| |||| Sbjct 1004876 TGCAGGTACAGTGACAACAGCAT 1004854 >seq54868 Length=1506235 Score = 113 bits (124), Expect = 3e-19 Identities = 549/858 (64%), Gaps = 28/858 (3%) Strand=Plus/Plus Query 281633 GGAATTGTTGTGTTTCTATCAATAATATTGGTCATAATACCACCAGCTGTTTCTAAACCA 281692 || || || ||||| || ||| | | |||||| | ||| ||||| || || | |||| Sbjct 505167 GGGATGGTGGTGTTCCTTGGAATCAAAACGGTCATGACACCTCCAGCAGTCTCCAGACCA 505226 Query 281693 AGAGAAAGAGGAGTGACATCAACTAGGACAATATTTTGAAGTTTTTCATCAGTTTGACCA 281752 ||||||||||| |||||||||| || | | | || | || || | | | ||| Sbjct 505227 AGAGAAAGAGGTGTGACATCAAGCAGCAGGAGGTCCTGGACCTTCTCGTTACCCTCTCCA 505286 Query 281753 A-CAAGAATAGCTGCTTGAATAGCAGCACCATATGCAACAGCTTCATCAGGATTAACAGT 281811 ||||| | || || || | ||||||||||| |||||||| |||||||| || | | Sbjct 505287 CTCAAGA-TGGCAGCCTGGACTGCAGCACCATAGGCAACAGCCTCATCAGGGTTGATGTT 505345 Query 281812 TTCATTTAGTTTTTTACCATTGAAAAAATTTGAAAGAAGTTGTCTTACCTTAGGAATACG 281871 | || | || |||||||| || | ||| || || ||| | || || | Sbjct 505346 CTTGCACAGCTCCTTGCCATTGAAGAAGTCCTGAAGCAGCTGCTGCACCCTTGGGATCCT 505405 Query 281872 AGATGATCCTCCAACTAATACAATTTCATGCACCTGTGAT-TTATCCAGTTTTGAATCCA 281930 | || || ||||| | |||| ||||| || ||| | || |||| || | |||| Sbjct 505406 GGTGGAGCCACCAACAAGGACAACATCATGGACA-GTGCTCTTGTCCATCTTAGCATCCC 505464 Query 281931 ATAAAACTTTTTCAACGGGTTCAAGACCAGCTCTAAACAAGTC--TGAACAAAGTTCTTC 281988 | || ||||| || || | | || || | ||| || ||| || || Sbjct 505465 TCAGGCACTTCTCAACAGGCTCCATGCACTTCCTGAAGAGGTCCATGTTCAAC--TCCTC 505522 Query 281989 GAATTTAGCTCTAGTAAGAGTGACAT-TATAA-TCAATTCCTTCGAACAAAGAATCAACT 282046 || | || | || | || | | || || || || || || ||| || |||| Sbjct 505523 AAACCTGGCACGGGTGATGGT--CGTGTAGAAGTCGATGCCCTCATACAGCGAGTCAATC 505580 Query 282047 TCAATCGTAGTTTGAGTCGAAGAAGATAGTGCACGTTTAGCACGTTCACATGCTGTCCTT 282106 ||||| || ||||| | | || || || | | || || || ||||| |||||||| Sbjct 505581 TCAATGGTGGTTTGTGCAGTGGAGGAGAGGGTCCTCTTCGCCCGCTCACAAGCTGTCCTC 505640 Query 282107 AGTCTTCGTA-AGGCTT----TTGCTGATTGATTCAAATCTGTTTTATATTTTCTCTTGA 282161 || || || | || | | |||| | | ||| || | || | || ||||||| Sbjct 505641 AGCCTACGGAGAGCCCTGGGGTTGCCGCT-GATG----TCCTTCTTGTTCTTCCTCTTGA 505695 Query 282162 AATCTTCAACACACCATGTTACAAGACGATTATCAAAATCTTCACCTCCCAATTTAGTAT 282221 | || | ||| | | || | | |||||||| || ||||| || | | ||| | Sbjct 505696 ATTCCTGGACAAAGTGGTTGACCATCCTGTTATCAAAGTCCTCACCACCAAGGTGAGTGT 505755 Query 282222 TTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAAGAGACAAAAGAGTAACATCAT 282281 || | || | | || | || | || ||||||| | | ||||| |||||| Sbjct 505756 CACCAGCAGTGGACTTGACCTCAAAGATGCCCTCTTCAATGGTGAGAAGAGAGACATCAA 505815 Query 282282 GGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCT----TGG--TTTT 282335 ||| || ||||| | ||||| || || |||||| | || | ||| || | Sbjct 505816 AGGTGCCGCCACCAAGGTCAAAGATGAGAACATTCTTCTCACCAACACTGGTGGCCTTCT 505875 Query 282336 TATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAA 282395 | ||||||||||| |||| ||||||||| ||||| || || || || | || |||||| | Sbjct 505876 TGTCAAGACCATAAGCAATAGCAGCAGCGGTTGGCTCGTTGATGATGCGCATAACATTTA 505935 Query 282396 GACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAG 282455 | || ||||| ||| ||||| || ||||| || || || || || || || || |||| Sbjct 505936 GGCCTGCAATCACTCCAGCATCCTTGGTGGCCTGCCTCTGGGAGTCATTGAAGTAGGCAG 505995 Query 282456 GAACAGTAATAACGGCAT 282473 | ||||| | || |||| Sbjct 505996 GGACAGTGACCACAGCAT 506013 >seq37111 Length=151593 Score = 113 bits (124), Expect = 3e-19 Identities = 303/462 (66%), Gaps = 6/462 (1%) Strand=Plus/Plus Query 282018 AATCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTG 282077 |||||| ||| || || | ||||| | ||||| || ||||| | | ||||| || | Sbjct 24112 AATCAACTCCCTCAAAGAGTGAATCGATCTCAATGGTGGTTTGGGCAGTGGAAGAAAGGG 24171 Query 282078 CACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATTGATTCA 282137 | || || | ||||| | ||||| || |||| || | | | | | | | Sbjct 24172 TCCTCTTCGCCCTCTCACAAGAAGTCCTGAGCCTTCTCAAAGACCTGGGGTTTCCACTGA 24231 Query 282138 AATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCAA 282197 ||| | || | || |||||||| |||| ||| | | || | ||| || |||| Sbjct 24232 TATCCTTCTTGTGCTTCCTCTTGAACTCTTGGACAAAGTGGTTCACCATACGGTTGTCAA 24291 Query 282198 AATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTT 282257 | || || || || | | ||| | || | ||| || | || | |||| || || | Sbjct 24292 AGTCCTCCCCACCAAGATGAGTGTCACCAGCCGTGGCCTTCACCTCAAAAATACCCTCCT 24351 Query 282258 CAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCA 282317 ||| | | || | |||||| || |||||||| | ||||| ||||| |||||| Sbjct 24352 CAATGGTAAGGAGGGAGACATCAAAAGTGCCACCACCAAGGTCAAAGATAAGCACATTCT 24411 Query 282318 TTTCTTTGTCT-TGGT-----TTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTT 282371 | || | | |||| | || ||||||||||| |||| ||||| || ||||| | Sbjct 24412 TCTCACCGACACTGGTAGCCTTCTTGTCAAGACCATAGGCAATTGCAGCTGCTGTTGGCT 24471 Query 282372 CATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTC 282431 | || || || | || ||||||||||||||||| || ||||| || || || || | Sbjct 24472 CGTTGATGATACGCATCACATTAAGACCAGCAATAACACCGGCATCCTTGGTTGCCTGCC 24531 Query 282432 TTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCAT 282473 | || ||||| || || || ||||| || || | ||| |||| Sbjct 24532 TCTGGGAATCATTGAAGTAAGCAGGCACGGTGACAACAGCAT 24573 >seq15240 Length=986841 Score = 113 bits (124), Expect = 3e-19 Identities = 110/142 (77%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 282332 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 282391 || || ||||||||||| |||| ||||||||||||||| || || || || | || |||| Sbjct 684795 TTCTTGTCAAGACCATATGCAATAGCAGCAGCAGTTGGCTCGTTGATGATGCGCATAACA 684854 Query 282392 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 282451 || |||||||| | | ||| || || || ||||| ||||| || || ||||| || || Sbjct 684855 TTCAGACCAGCCAAACCTCCAGCTTCCTTGGTGGCCTGTCTCTGAGAGTCGTTGAAGTAG 684914 Query 282452 GCAGGAACAGTAATAACGGCAT 282473 ||||| ||| | | ||| |||| Sbjct 684915 GCAGGGACACTGACAACAGCAT 684936 >seq59851 Length=371957 Score = 107 bits (118), Expect = 1e-17 Identities = 532/829 (64%), Gaps = 30/829 (4%) Strand=Plus/Minus Query 281663 GTCATAATACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACA 281722 ||||| | ||| || ||||| || | |||||||||||||||||||||||| | ||| | Sbjct 244670 GTCATCACACCCCCGGCTGTCTCCAGACCAAGAGAAAGAGGAGTGACATCCAATAGCAGC 244611 Query 281723 ATATTTTGAAGTTTTTCATCAGTTTGACCAA-CAAGAATAGCTGCTTGAATAGCAGCACC 281781 | | || | || || | | || ||||| | || || || | |||||| || Sbjct 244610 AGGTCCTGGACCTTCTCGTTGCCCTCTCCGCTCAAGA-TGGCAGCCTGGACAGCAGCCCC 244552 Query 281782 ATATGCAACAGCTTCATCAGGATTAA--CAGTTTCATTTAGTTTTTTACCATTGAAAAAA 281839 || |||||||| |||||||| || | | || || || | || || ||||| || Sbjct 244551 GTAGGCAACAGCCTCATCAGGGTTGATGCTCTTGCAG--AGCTCCTTGCCGTTGAAGAAG 244494 Query 281840 TTTGAAAGAAGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCA 281899 | ||||| || || || ||||| | || || || ||||| | |||| || Sbjct 244493 TCCTGGAGAAGCTGCTGCACTTTTGGAATCCTAGTGGAACCACCAACAAGGACAACATCG 244434 Query 281900 TGCACCTGTGAT-TTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACC 281958 ||||| ||| | || |||| |||| |||| | | || || || || || | || Sbjct 244433 TGCACG-GTGCTCTTGTCCATCTTTGCATCCCTGAGACACTTCTCCACAGGCTCCATACA 244375 Query 281959 AGCTCTAAACAAGTC--TGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATTA 282016 || |||| || || || || || || |||| | || | ||| | || Sbjct 244374 CTTCCTGAACAGATCCATGTTCATC--TCCTCAAACCTAGCCCGGGTGATGGTGG-AGTA 244318 Query 282017 TAA-TCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTG---AGTCGAAGAAGA 282072 || ||||| ||||| |||| || |||| ||||| || || || ||| || || || Sbjct 244317 GAAGTCAATGCCTTCAAACAGCGAGTCAATCTCAATGGTGGTCTGCGCAGTGGAGGA-GA 244259 Query 282073 TAGTGCACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATTG 282132 ||| | | || || | ||||| | |||||| || || || | ||| | | | ||| Sbjct 244258 GAGTCCTCTTT--GCCCTCTCACAGGATGTCCTCAGCCTCCGAAGAGCTCTCG--GGTTG 244203 Query 282133 --ATTCAAATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGA 282190 | | | || | || | || |||||||| || | || | | || | | Sbjct 244202 CCACTGATGTCCTTCTTGTTCTTCCTCTTGAACTCCTGGACGAAGTGGTTGACCATCCTG 244143 Query 282191 TTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGT 282250 || || || || ||||| || | | ||| | || | || ||| | || | || | Sbjct 244142 TTGTCGAAGTCCTCACCACCAAGATGAGTGTCACCAGCTGTGGCTTTAACCTCAAAGATA 244083 Query 282251 CCATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGT 282310 || || |||| | | ||||| |||||| ||| |||||||| | ||||| || || Sbjct 244082 CCCTCCTCAATGGTGAGAAGAGAGACATCAAAGGTACCACCACCGAGGTCAAAGATGAGG 244023 Query 282311 ACATTCATTTCTTTGTCT-TGG-----TTTTTATCAAGACCATACGCAAAAGCAGCAGCA 282364 || ||| | || | ||| || || ||||||||||| |||| |||||||| Sbjct 244022 ACGTTCTTCTCACCAACACTGGATGCCTTCTTGTCAAGACCATAAGCAATGGCAGCAGCT 243963 Query 282365 GTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTG 282424 ||||| || || || || | | ||||| | |||||||| || ||||| || || Sbjct 243962 GTTGGCTCGTTGATGATACGAAGGACATTGATGCCAGCAATGACACCAGCATCCTTGGTA 243903 Query 282425 GCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCAT 282473 || || || || || || || || |||||||| ||||| | ||| |||| Sbjct 243902 GCCTGCCTCTGCGAGTCATTGAAGTATGCAGGTACAGTGACAACAGCAT 243854 >seq35556 Length=170707 Score = 87.8 bits (96), Expect = 1e-11 Identities = 142/203 (70%), Gaps = 6/203 (3%) Strand=Plus/Minus Query 282275 ACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCTTGGTTT 282334 |||||| || || ||||||| ||||| | || | || |||| |||| || | Sbjct 70271 ACATCAAAAGTACCGCCACCCAAGTCAAACACTAGAA---TCGTTTCGTTGTTTT---TC 70218 Query 282335 TTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTA 282394 || |||| |||||| |||| || ||||||||||| ||||| ||||| | | ||| | Sbjct 70217 TTCTCAAAACCATAAGCAAGAGATGCAGCAGTTGGCTCATTTATAATGCGGAGAACTTCC 70158 Query 282395 AGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCA 282454 || || ||||| | || ||||| || || ||| ||| || || || || || || || Sbjct 70157 AGCCCTGCAATACGGCCAGCATCCTTTGTTGCTGTTCTCTGCGAGTCATTGAAGTACGCT 70098 Query 282455 GGAACAGTAATAACGGCATCTGT 282477 ||||| |||| || || | ||| Sbjct 70097 GGAACGGTAACCACCGCTTTTGT 70075 >seq18401 Length=486158 Score = 86.0 bits (94), Expect = 5e-11 Identities = 89/117 (76%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 282355 AGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGC 282414 ||||||||||||||||||||| || || || |||| ||| |||||||| | || || Sbjct 477547 AGCAGCAGCAGTTGGTTCATTGATGATCCTTTGGACATCAAGTCCAGCAATACGGCCAGC 477606 Query 282415 ATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGC 282471 ||| || ||||| || || || | ||| || || || || ||||| ||||| || || Sbjct 477607 ATCCTTGGTGGCCTGCCTCTGAGCATCATTGAAGTAAGCTGGAACGGTAATGACAGC 477663 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3737265473841588