Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Aegilops_20tauschii_20subsp._20tauschii_20[refseq_20GCF_5F001957025.
1_202017-01-19] 68,538 sequences; 4,327,321,625 total letters
Query= NC_023639.1
Length=1168989
Score E
Sequences producing significant alignments: (Bits) Value
seq58782 122 7e-22
seq54868 113 3e-19
seq37111 113 3e-19
seq15240 113 3e-19
seq59851 107 1e-17
seq35556 87.8 1e-11
seq18401 86.0 5e-11
>seq58782
Length=1261902
Score = 122 bits (134), Expect = 7e-22
Identities = 556/863 (64%), Gaps = 38/863 (4%)
Strand=Plus/Minus
Query 281633 GGAATTGTTGTGTTTCT----ATCAATAATATTGGTCATAATACCACCAGCTGTTTCTAA 281688
|| || |||||||| || ||||| | | ||||| | ||| ||||| || || |
Sbjct 1005700 GGGATGGTTGTGTTCCTTGGGATCAAGACT----GTCATTACACCTCCAGCCGTCTCCAG 1005645
Query 281689 ACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATATTTTGAAGTTTTTCATCAGTTTG 281748
|||||||||||||||||||||||| | ||| | | | || | || || | |
Sbjct 1005644 ACCAAGAGAAAGAGGAGTGACATCCAATAGCAGCAGGTCCTGGACCTTCTCGTTGCCCTC 1005585
Query 281749 ACCAA-CAAGAATAGCTGCTTGAATAGCAGCACCATATGCAACAGCTTCATCAGGATTAA 281807
||| ||||| | || || || | ||||| || || |||||||| |||||||| || |
Sbjct 1005584 ACCGCTCAAGA-TGGCAGCCTGGACGGCAGCTCCGTAGGCAACAGCCTCATCAGGGTTGA 1005526
Query 281808 --CAGTTTCATTTAGTTTTTTACCATTGAAAAAATTTGAAAGAAGTTGTCTTACCTTAGG 281865
| || || || | || |||||||| || | |||||| || || | ||
Sbjct 1005525 TGCTCTTGCAG--AGCTCCTTGCCATTGAAGAAGTCCTGAAGAAGCTGCTGCACTCTGGG 1005468
Query 281866 AATACGAGATGATCCTCCAACTAATACAATTTCATGCACCTGTGAT-TTATCCAGTTTTG 281924
||| | || || || ||||| | |||| || ||||| ||| | || |||| ||||
Sbjct 1005467 AATCCTAGTGGAACCACCAACAAGGACAACATCGTGCACG-GTGCTCTTGTCCATCTTTG 1005409
Query 281925 AATCCAATAAAACTTTTTCAACGGGTTCAAGACCAGCTCTAAACAAGTC--TGAACAAAG 281982
||| ||| || || || || || | || || |||| || || ||
Sbjct 1005408 CGTCCCTCAAACACTTCTCCACAGGCTCCATACACTTCCTGAACAGATCCATGTTCATC- 1005350
Query 281983 TTCTTCGAATTTAGCTCTAGTAAGAGTGACATTATAA-TCAATTCCTTCGAACAAAGAAT 282041
|| || || | || | || | ||| | || || ||||| || || |||| || |
Sbjct 1005349 -TCCTCAAACCTGGCACGGGTGATGGTGG-AGTAGAAGTCAATGCCCTCAAACAGCGAGT 1005292
Query 282042 CAACTTCAATCGTAGTTTG---AGTCGAAGAAGATAGTGCACGTTTAGCACGTTCACATG 282098
||| ||||| || || || ||| || || || ||| | | || || | ||||| |
Sbjct 1005291 CAATCTCAATGGTGGTCTGGGCAGTGGAGGA-GAGAGTTCTCTTT--GCCCTCTCACAGG 1005235
Query 282099 CTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATTG--ATTCAAATCTGTTTTATATTTTCT 282156
|||||| || || || | ||| ||| | ||| | | | || | || | || ||
Sbjct 1005234 ATGTCCTCAGCCTCCGCAGAGCTCTTG--GGTTGCCACTGATGTCCTTCTTGTTCTTCCT 1005177
Query 282157 CTTGAAATCTTCAACACACCATGTTACAAGACGATTATCAAAATCTTCACCTCCCAATTT 282216
|||||| || | |||| | | || | | || ||||| || ||||| || | |
Sbjct 1005176 CTTGAACTCCTGAACAAAGTGGTTGACCATCCTGTTGTCAAAGTCCTCACCACCAAGATG 1005117
Query 282217 AGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAAGAGACAAAAGAGTAAC 282276
||| | || | || ||| | || | ||| | || || |||| | | ||||| ||
Sbjct 1005116 AGTGTCACCAGCTGTGGCTTTAACCTCGAAGATACCCTCCTCAATGGTGAGAAGAGAGAC 1005057
Query 282277 ATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCT-TGG---- 282331
||| ||| ||||| || | ||||| || || || ||| | || | |||
Sbjct 1005056 ATCGAAGGTACCACCTCCAAGGTCAAAGATGAGGACGTTCTTCTCACCAACACTGGAAGC 1004997
Query 282332 -TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAAC 282390
|| || ||||||||||| |||| |||||||| ||||| ||||| || || | | ||
Sbjct 1004996 CTTCTTGTCAAGACCATAAGCAATGGCAGCAGCTGTTGGCTCATTGATGATACGGAGGAC 1004937
Query 282391 ATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATA 282450
||| | |||||||| || ||||| || || || || || || || || || || ||
Sbjct 1004936 ATTGATGCCAGCAATGACACCAGCATCCTTGGTAGCCTGCCTCTGCGAGTCATTGAAGTA 1004877
Query 282451 TGCAGGAACAGTAATAACGGCAT 282473
|||||| ||||| | ||| ||||
Sbjct 1004876 TGCAGGTACAGTGACAACAGCAT 1004854
>seq54868
Length=1506235
Score = 113 bits (124), Expect = 3e-19
Identities = 549/858 (64%), Gaps = 28/858 (3%)
Strand=Plus/Plus
Query 281633 GGAATTGTTGTGTTTCTATCAATAATATTGGTCATAATACCACCAGCTGTTTCTAAACCA 281692
|| || || ||||| || ||| | | |||||| | ||| ||||| || || | ||||
Sbjct 505167 GGGATGGTGGTGTTCCTTGGAATCAAAACGGTCATGACACCTCCAGCAGTCTCCAGACCA 505226
Query 281693 AGAGAAAGAGGAGTGACATCAACTAGGACAATATTTTGAAGTTTTTCATCAGTTTGACCA 281752
||||||||||| |||||||||| || | | | || | || || | | | |||
Sbjct 505227 AGAGAAAGAGGTGTGACATCAAGCAGCAGGAGGTCCTGGACCTTCTCGTTACCCTCTCCA 505286
Query 281753 A-CAAGAATAGCTGCTTGAATAGCAGCACCATATGCAACAGCTTCATCAGGATTAACAGT 281811
||||| | || || || | ||||||||||| |||||||| |||||||| || | |
Sbjct 505287 CTCAAGA-TGGCAGCCTGGACTGCAGCACCATAGGCAACAGCCTCATCAGGGTTGATGTT 505345
Query 281812 TTCATTTAGTTTTTTACCATTGAAAAAATTTGAAAGAAGTTGTCTTACCTTAGGAATACG 281871
| || | || |||||||| || | ||| || || ||| | || || |
Sbjct 505346 CTTGCACAGCTCCTTGCCATTGAAGAAGTCCTGAAGCAGCTGCTGCACCCTTGGGATCCT 505405
Query 281872 AGATGATCCTCCAACTAATACAATTTCATGCACCTGTGAT-TTATCCAGTTTTGAATCCA 281930
| || || ||||| | |||| ||||| || ||| | || |||| || | ||||
Sbjct 505406 GGTGGAGCCACCAACAAGGACAACATCATGGACA-GTGCTCTTGTCCATCTTAGCATCCC 505464
Query 281931 ATAAAACTTTTTCAACGGGTTCAAGACCAGCTCTAAACAAGTC--TGAACAAAGTTCTTC 281988
| || ||||| || || | | || || | ||| || ||| || ||
Sbjct 505465 TCAGGCACTTCTCAACAGGCTCCATGCACTTCCTGAAGAGGTCCATGTTCAAC--TCCTC 505522
Query 281989 GAATTTAGCTCTAGTAAGAGTGACAT-TATAA-TCAATTCCTTCGAACAAAGAATCAACT 282046
|| | || | || | || | | || || || || || || ||| || ||||
Sbjct 505523 AAACCTGGCACGGGTGATGGT--CGTGTAGAAGTCGATGCCCTCATACAGCGAGTCAATC 505580
Query 282047 TCAATCGTAGTTTGAGTCGAAGAAGATAGTGCACGTTTAGCACGTTCACATGCTGTCCTT 282106
||||| || ||||| | | || || || | | || || || ||||| ||||||||
Sbjct 505581 TCAATGGTGGTTTGTGCAGTGGAGGAGAGGGTCCTCTTCGCCCGCTCACAAGCTGTCCTC 505640
Query 282107 AGTCTTCGTA-AGGCTT----TTGCTGATTGATTCAAATCTGTTTTATATTTTCTCTTGA 282161
|| || || | || | | |||| | | ||| || | || | || |||||||
Sbjct 505641 AGCCTACGGAGAGCCCTGGGGTTGCCGCT-GATG----TCCTTCTTGTTCTTCCTCTTGA 505695
Query 282162 AATCTTCAACACACCATGTTACAAGACGATTATCAAAATCTTCACCTCCCAATTTAGTAT 282221
| || | ||| | | || | | |||||||| || ||||| || | | ||| |
Sbjct 505696 ATTCCTGGACAAAGTGGTTGACCATCCTGTTATCAAAGTCCTCACCACCAAGGTGAGTGT 505755
Query 282222 TTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAAGAGACAAAAGAGTAACATCAT 282281
|| | || | | || | || | || ||||||| | | ||||| ||||||
Sbjct 505756 CACCAGCAGTGGACTTGACCTCAAAGATGCCCTCTTCAATGGTGAGAAGAGAGACATCAA 505815
Query 282282 GGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCT----TGG--TTTT 282335
||| || ||||| | ||||| || || |||||| | || | ||| || |
Sbjct 505816 AGGTGCCGCCACCAAGGTCAAAGATGAGAACATTCTTCTCACCAACACTGGTGGCCTTCT 505875
Query 282336 TATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAA 282395
| ||||||||||| |||| ||||||||| ||||| || || || || | || |||||| |
Sbjct 505876 TGTCAAGACCATAAGCAATAGCAGCAGCGGTTGGCTCGTTGATGATGCGCATAACATTTA 505935
Query 282396 GACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAG 282455
| || ||||| ||| ||||| || ||||| || || || || || || || || ||||
Sbjct 505936 GGCCTGCAATCACTCCAGCATCCTTGGTGGCCTGCCTCTGGGAGTCATTGAAGTAGGCAG 505995
Query 282456 GAACAGTAATAACGGCAT 282473
| ||||| | || ||||
Sbjct 505996 GGACAGTGACCACAGCAT 506013
>seq37111
Length=151593
Score = 113 bits (124), Expect = 3e-19
Identities = 303/462 (66%), Gaps = 6/462 (1%)
Strand=Plus/Plus
Query 282018 AATCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTG 282077
|||||| ||| || || | ||||| | ||||| || ||||| | | ||||| || |
Sbjct 24112 AATCAACTCCCTCAAAGAGTGAATCGATCTCAATGGTGGTTTGGGCAGTGGAAGAAAGGG 24171
Query 282078 CACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATTGATTCA 282137
| || || | ||||| | ||||| || |||| || | | | | | | |
Sbjct 24172 TCCTCTTCGCCCTCTCACAAGAAGTCCTGAGCCTTCTCAAAGACCTGGGGTTTCCACTGA 24231
Query 282138 AATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCAA 282197
||| | || | || |||||||| |||| ||| | | || | ||| || ||||
Sbjct 24232 TATCCTTCTTGTGCTTCCTCTTGAACTCTTGGACAAAGTGGTTCACCATACGGTTGTCAA 24291
Query 282198 AATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTT 282257
| || || || || | | ||| | || | ||| || | || | |||| || || |
Sbjct 24292 AGTCCTCCCCACCAAGATGAGTGTCACCAGCCGTGGCCTTCACCTCAAAAATACCCTCCT 24351
Query 282258 CAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCA 282317
||| | | || | |||||| || |||||||| | ||||| ||||| ||||||
Sbjct 24352 CAATGGTAAGGAGGGAGACATCAAAAGTGCCACCACCAAGGTCAAAGATAAGCACATTCT 24411
Query 282318 TTTCTTTGTCT-TGGT-----TTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTT 282371
| || | | |||| | || ||||||||||| |||| ||||| || ||||| |
Sbjct 24412 TCTCACCGACACTGGTAGCCTTCTTGTCAAGACCATAGGCAATTGCAGCTGCTGTTGGCT 24471
Query 282372 CATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTC 282431
| || || || | || ||||||||||||||||| || ||||| || || || || |
Sbjct 24472 CGTTGATGATACGCATCACATTAAGACCAGCAATAACACCGGCATCCTTGGTTGCCTGCC 24531
Query 282432 TTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCAT 282473
| || ||||| || || || ||||| || || | ||| ||||
Sbjct 24532 TCTGGGAATCATTGAAGTAAGCAGGCACGGTGACAACAGCAT 24573
>seq15240
Length=986841
Score = 113 bits (124), Expect = 3e-19
Identities = 110/142 (77%), Gaps = 0/142 (0%)
Strand=Plus/Plus
Query 282332 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 282391
|| || ||||||||||| |||| ||||||||||||||| || || || || | || ||||
Sbjct 684795 TTCTTGTCAAGACCATATGCAATAGCAGCAGCAGTTGGCTCGTTGATGATGCGCATAACA 684854
Query 282392 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 282451
|| |||||||| | | ||| || || || ||||| ||||| || || ||||| || ||
Sbjct 684855 TTCAGACCAGCCAAACCTCCAGCTTCCTTGGTGGCCTGTCTCTGAGAGTCGTTGAAGTAG 684914
Query 282452 GCAGGAACAGTAATAACGGCAT 282473
||||| ||| | | ||| ||||
Sbjct 684915 GCAGGGACACTGACAACAGCAT 684936
>seq59851
Length=371957
Score = 107 bits (118), Expect = 1e-17
Identities = 532/829 (64%), Gaps = 30/829 (4%)
Strand=Plus/Minus
Query 281663 GTCATAATACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACA 281722
||||| | ||| || ||||| || | |||||||||||||||||||||||| | ||| |
Sbjct 244670 GTCATCACACCCCCGGCTGTCTCCAGACCAAGAGAAAGAGGAGTGACATCCAATAGCAGC 244611
Query 281723 ATATTTTGAAGTTTTTCATCAGTTTGACCAA-CAAGAATAGCTGCTTGAATAGCAGCACC 281781
| | || | || || | | || ||||| | || || || | |||||| ||
Sbjct 244610 AGGTCCTGGACCTTCTCGTTGCCCTCTCCGCTCAAGA-TGGCAGCCTGGACAGCAGCCCC 244552
Query 281782 ATATGCAACAGCTTCATCAGGATTAA--CAGTTTCATTTAGTTTTTTACCATTGAAAAAA 281839
|| |||||||| |||||||| || | | || || || | || || ||||| ||
Sbjct 244551 GTAGGCAACAGCCTCATCAGGGTTGATGCTCTTGCAG--AGCTCCTTGCCGTTGAAGAAG 244494
Query 281840 TTTGAAAGAAGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCA 281899
| ||||| || || || ||||| | || || || ||||| | |||| ||
Sbjct 244493 TCCTGGAGAAGCTGCTGCACTTTTGGAATCCTAGTGGAACCACCAACAAGGACAACATCG 244434
Query 281900 TGCACCTGTGAT-TTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACC 281958
||||| ||| | || |||| |||| |||| | | || || || || || | ||
Sbjct 244433 TGCACG-GTGCTCTTGTCCATCTTTGCATCCCTGAGACACTTCTCCACAGGCTCCATACA 244375
Query 281959 AGCTCTAAACAAGTC--TGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATTA 282016
|| |||| || || || || || || |||| | || | ||| | ||
Sbjct 244374 CTTCCTGAACAGATCCATGTTCATC--TCCTCAAACCTAGCCCGGGTGATGGTGG-AGTA 244318
Query 282017 TAA-TCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTG---AGTCGAAGAAGA 282072
|| ||||| ||||| |||| || |||| ||||| || || || ||| || || ||
Sbjct 244317 GAAGTCAATGCCTTCAAACAGCGAGTCAATCTCAATGGTGGTCTGCGCAGTGGAGGA-GA 244259
Query 282073 TAGTGCACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATTG 282132
||| | | || || | ||||| | |||||| || || || | ||| | | | |||
Sbjct 244258 GAGTCCTCTTT--GCCCTCTCACAGGATGTCCTCAGCCTCCGAAGAGCTCTCG--GGTTG 244203
Query 282133 --ATTCAAATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGA 282190
| | | || | || | || |||||||| || | || | | || | |
Sbjct 244202 CCACTGATGTCCTTCTTGTTCTTCCTCTTGAACTCCTGGACGAAGTGGTTGACCATCCTG 244143
Query 282191 TTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGT 282250
|| || || || ||||| || | | ||| | || | || ||| | || | || |
Sbjct 244142 TTGTCGAAGTCCTCACCACCAAGATGAGTGTCACCAGCTGTGGCTTTAACCTCAAAGATA 244083
Query 282251 CCATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGT 282310
|| || |||| | | ||||| |||||| ||| |||||||| | ||||| || ||
Sbjct 244082 CCCTCCTCAATGGTGAGAAGAGAGACATCAAAGGTACCACCACCGAGGTCAAAGATGAGG 244023
Query 282311 ACATTCATTTCTTTGTCT-TGG-----TTTTTATCAAGACCATACGCAAAAGCAGCAGCA 282364
|| ||| | || | ||| || || ||||||||||| |||| ||||||||
Sbjct 244022 ACGTTCTTCTCACCAACACTGGATGCCTTCTTGTCAAGACCATAAGCAATGGCAGCAGCT 243963
Query 282365 GTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTG 282424
||||| || || || || | | ||||| | |||||||| || ||||| || ||
Sbjct 243962 GTTGGCTCGTTGATGATACGAAGGACATTGATGCCAGCAATGACACCAGCATCCTTGGTA 243903
Query 282425 GCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCAT 282473
|| || || || || || || || |||||||| ||||| | ||| ||||
Sbjct 243902 GCCTGCCTCTGCGAGTCATTGAAGTATGCAGGTACAGTGACAACAGCAT 243854
>seq35556
Length=170707
Score = 87.8 bits (96), Expect = 1e-11
Identities = 142/203 (70%), Gaps = 6/203 (3%)
Strand=Plus/Minus
Query 282275 ACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCTTGGTTT 282334
|||||| || || ||||||| ||||| | || | || |||| |||| || |
Sbjct 70271 ACATCAAAAGTACCGCCACCCAAGTCAAACACTAGAA---TCGTTTCGTTGTTTT---TC 70218
Query 282335 TTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTA 282394
|| |||| |||||| |||| || ||||||||||| ||||| ||||| | | ||| |
Sbjct 70217 TTCTCAAAACCATAAGCAAGAGATGCAGCAGTTGGCTCATTTATAATGCGGAGAACTTCC 70158
Query 282395 AGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCA 282454
|| || ||||| | || ||||| || || ||| ||| || || || || || || ||
Sbjct 70157 AGCCCTGCAATACGGCCAGCATCCTTTGTTGCTGTTCTCTGCGAGTCATTGAAGTACGCT 70098
Query 282455 GGAACAGTAATAACGGCATCTGT 282477
||||| |||| || || | |||
Sbjct 70097 GGAACGGTAACCACCGCTTTTGT 70075
>seq18401
Length=486158
Score = 86.0 bits (94), Expect = 5e-11
Identities = 89/117 (76%), Gaps = 0/117 (0%)
Strand=Plus/Plus
Query 282355 AGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGC 282414
||||||||||||||||||||| || || || |||| ||| |||||||| | || ||
Sbjct 477547 AGCAGCAGCAGTTGGTTCATTGATGATCCTTTGGACATCAAGTCCAGCAATACGGCCAGC 477606
Query 282415 ATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGC 282471
||| || ||||| || || || | ||| || || || || ||||| ||||| || ||
Sbjct 477607 ATCCTTGGTGGCCTGCCTCTGAGCATCATTGAAGTAAGCTGGAACGGTAATGACAGC 477663
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 3737265473841588
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |