Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Aegilops_20tauschii_20subsp._20tauschii_20[refseq_20GCF_5F001957025.
1_202017-01-19] 68,538 sequences; 4,327,321,625 total letters
Query= NC_024450.1
Length=204054
Score E
Sequences producing significant alignments: (Bits) Value
seq10533 96.9 5e-15
seq68534 84.2 3e-11
seq68531 84.2 3e-11
>seq10533
Length=13205
Score = 96.9 bits (106), Expect = 5e-15
Identities = 67/75 (89%), Gaps = 1/75 (1%)
Strand=Plus/Minus
Query 11728 AGTCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGAT 11786
|||||||| |||||||||||| ||||| |||| ||||| | |||||||||||||||||||
Sbjct 1464 AGTCCTCGGTAGTATAGTGGTCAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGAT 1405
Query 11787 TCCCCGACGAGGAGG 11801
|||||| || |||||
Sbjct 1404 TCCCCGCCGGGGAGG 1390
Score = 96.9 bits (106), Expect = 5e-15
Identities = 67/75 (89%), Gaps = 1/75 (1%)
Strand=Plus/Minus
Query 11728 AGTCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGAT 11786
|||||||| |||||||||||| ||||| |||| ||||| | |||||||||||||||||||
Sbjct 7327 AGTCCTCGGTAGTATAGTGGTCAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGAT 7268
Query 11787 TCCCCGACGAGGAGG 11801
|||||| || |||||
Sbjct 7267 TCCCCGCCGGGGAGG 7253
Score = 96.9 bits (106), Expect = 5e-15
Identities = 67/75 (89%), Gaps = 1/75 (1%)
Strand=Plus/Minus
Query 11728 AGTCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGAT 11786
|||||||| |||||||||||| ||||| |||| ||||| | |||||||||||||||||||
Sbjct 13205 AGTCCTCGGTAGTATAGTGGTCAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGAT 13146
Query 11787 TCCCCGACGAGGAGG 11801
|||||| || |||||
Sbjct 13145 TCCCCGCCGGGGAGG 13131
Score = 95.1 bits (104), Expect = 2e-14
Identities = 66/75 (88%), Gaps = 0/75 (0%)
Strand=Plus/Minus
Query 8655 TATTCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGA 8714
|| |||||| |||||||||||| ||||| |||| ||||| | ||||||||||||||||||
Sbjct 1465 TAGTCCTCGGTAGTATAGTGGTCAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGA 1406
Query 8715 TTCCCCGACGAGGAG 8729
||||||| || ||||
Sbjct 1405 TTCCCCGCCGGGGAG 1391
Score = 95.1 bits (104), Expect = 2e-14
Identities = 66/75 (88%), Gaps = 0/75 (0%)
Strand=Plus/Minus
Query 8655 TATTCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGA 8714
|| |||||| |||||||||||| ||||| |||| ||||| | ||||||||||||||||||
Sbjct 7328 TAGTCCTCGGTAGTATAGTGGTCAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGA 7269
Query 8715 TTCCCCGACGAGGAG 8729
||||||| || ||||
Sbjct 7268 TTCCCCGCCGGGGAG 7254
Score = 95.1 bits (104), Expect = 2e-14
Identities = 64/72 (89%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717
|||||| |||||||||||| ||||| |||| ||||| | |||||||||||||||||||||
Sbjct 13203 TCCTCGGTAGTATAGTGGTCAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 13144
Query 8718 CCCGACGAGGAG 8729
|||| || ||||
Sbjct 13143 CCCGCCGGGGAG 13132
Score = 86.0 bits (94), Expect = 8e-12
Identities = 62/72 (86%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412
|||| || |||||| |||||||||||||||||| | |||| |||||||| | |||||||
Sbjct 1391 CTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACTA 1450
Query 139413 TACTAACGAGGA 139424
||||| ||||||
Sbjct 1451 TACTACCGAGGA 1462
Score = 86.0 bits (94), Expect = 8e-12
Identities = 62/72 (86%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412
|||| || |||||| |||||||||||||||||| | |||| |||||||| | |||||||
Sbjct 7254 CTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACTA 7313
Query 139413 TACTAACGAGGA 139424
||||| ||||||
Sbjct 7314 TACTACCGAGGA 7325
Score = 86.0 bits (94), Expect = 8e-12
Identities = 62/72 (86%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412
|||| || |||||| |||||||||||||||||| | |||| |||||||| | |||||||
Sbjct 13132 CTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACTA 13191
Query 139413 TACTAACGAGGA 139424
||||| ||||||
Sbjct 13192 TACTACCGAGGA 13203
>seq68534
Length=694
Score = 84.2 bits (92), Expect = 3e-11
Identities = 65/76 (86%), Gaps = 1/76 (1%)
Strand=Plus/Plus
Query 11727 CAGTCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGA 11785
||||||||| |||||||||||| ||||| || ||||| | || |||||||||||||||
Sbjct 544 CAGTCCTCGGTAGTATAGTGGTCAGTATCTTCGCCTGTCACGCGAGAGACCGGGGTTCGA 603
Query 11786 TTCCCCGACGAGGAGG 11801
||||||| || |||||
Sbjct 604 TTCCCCGCCGGGGAGG 619
>seq68531
Length=2130
Score = 84.2 bits (92), Expect = 3e-11
Identities = 65/76 (86%), Gaps = 1/76 (1%)
Strand=Plus/Plus
Query 11727 CAGTCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGA 11785
||||||||| |||||||||||| ||||| || ||||| | || |||||||||||||||
Sbjct 1980 CAGTCCTCGGTAGTATAGTGGTCAGTATCTTCGCCTGTCACGCGAGAGACCGGGGTTCGA 2039
Query 11786 TTCCCCGACGAGGAGG 11801
||||||| || |||||
Sbjct 2040 TTCCCCGCCGGGGAGG 2055
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 652285491538720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |