Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Aegilops_20tauschii_20subsp._20tauschii_20[refseq_20GCF_5F001957025.
1_202017-01-19] 68,538 sequences; 4,327,321,625 total letters
Query= NC_025257.1
Length=102759
Score E
Sequences producing significant alignments: (Bits) Value
seq16495 100 2e-16
seq35796 98.7 7e-16
seq33789 98.7 7e-16
seq17562 95.1 8e-15
seq58488 91.5 1e-13
seq59033 89.7 3e-13
seq19801 86.0 4e-12
>seq16495
Length=532983
Score = 100 bits (110), Expect = 2e-16
Identities = 162/229 (71%), Gaps = 3/229 (1%)
Strand=Plus/Minus
Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582
||||| | | ||| | ||||| || || ||| |||||| || ||||||||||| |
Sbjct 85661 CCACCACGGAGACGGAGAACCAAGTGGAGGGTGGACTCTTTCTGGATGTTGTAATCAGCA 85602
Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGAT-CTTGCGG 33641
|||||||| | || || | |||||| |||||||| ||||| |||||||| | | | ||
Sbjct 85601 AGTGTGCGCCCATCCTCAAGTTGTTTGCCGGCAAAGATCAACCGCTGCTGGTCCGGGGGG 85542
Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700
| || || ||||| || ||| | || |||| ||| | |||||| || || |
Sbjct 85541 GATGCCCTCCTTGTCCTAGATCTTC-GCTTTGACATTGTCGATCGTGTCGGAAGACTCAA 85483
Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749
| || | ||||| || || || || | ||||| |||||||| |||||
Sbjct 85482 CCTCGAGGGTGATGGTCTTGCCGGTGAGGGTTTTCACAAAGATTTGCAT 85434
>seq35796
Length=307016
Score = 98.7 bits (108), Expect = 7e-16
Identities = 150/211 (71%), Gaps = 2/211 (1%)
Strand=Plus/Plus
Query 33540 CACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTC 33599
||||| || |||||| ||| || || ||||||||||||| ||| ||||| |||| ||
Sbjct 306218 CACCAGGTGCAGAGTGGACTCCTTCTGAATGTTGTAATCGGCGAGCGTGCGGCCGTCCTC 306277
Query 33600 CAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGC 33659
| || || ||||| || |||| ||||||||||| |||| | || || |||||
Sbjct 306278 GAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGATCCGGCGGGATGCCCTCCTTGTCCTG 306337
Query 33660 AATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTT 33718
|| || || | | ||| ||| | |||||| || ||||| |||| ||||| || |
Sbjct 306338 GATCTT-TGCCTTACCATTGTCGATGGTGTCAGAGGACTCCACCTCAAGGGTGATAGTCT 306396
Query 33719 TACCTGTTAACGTTTTTACAAAGATCTGCAT 33749
| || || | | || || |||||||||||
Sbjct 306397 TGCCGGTGAGGCTCTTCACGAAGATCTGCAT 306427
Score = 86.0 bits (94), Expect = 4e-12
Identities = 147/211 (70%), Gaps = 2/211 (1%)
Strand=Plus/Plus
Query 33540 CACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTC 33599
||||| || || ||| ||| || || ||||||||||| | ||| || || |||| ||
Sbjct 163718 CACCAGGTGCAGGGTGGACTCCTTCTGAATGTTGTAATCAGCGAGAGTACGGCCGTCCTC 163777
Query 33600 CAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGC 33659
| || || || || || |||| ||||||||| || |||| | || || |||||
Sbjct 163778 AAGCTGCTTGCCTGCGAAGATCAGACGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTG 163837
Query 33660 AATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTT 33718
|| || || | ||||| ||| | ||||| || ||||| || | ||||| || |
Sbjct 163838 GATCTT-TGCCTTAACATTGTCGATTGTGTCAGAGGACTCCACCTCGAGGGTGATAGTCT 163896
Query 33719 TACCTGTTAACGTTTTTACAAAGATCTGCAT 33749
| || || | || || ||||||||||||||
Sbjct 163897 TGCCCGTAAGGGTCTTCACAAAGATCTGCAT 163927
>seq33789
Length=94561
Score = 98.7 bits (108), Expect = 7e-16
Identities = 150/211 (71%), Gaps = 2/211 (1%)
Strand=Plus/Minus
Query 33540 CACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTC 33599
||||| || |||||| ||| || || ||||||||||||| ||| ||||| |||| ||
Sbjct 76808 CACCAGGTGCAGAGTGGACTCCTTCTGAATGTTGTAATCGGCGAGCGTGCGGCCGTCCTC 76749
Query 33600 CAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGC 33659
| || || ||||| || |||| ||||||||||| |||| | || || |||||
Sbjct 76748 GAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGATCCGGCGGGATGCCCTCCTTGTCCTG 76689
Query 33660 AATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTT 33718
|| || || | | ||| ||| | |||||| || ||||| |||| ||||| || |
Sbjct 76688 GATCTT-TGCCTTACCATTGTCGATGGTGTCAGAGGACTCCACCTCAAGGGTGATAGTCT 76630
Query 33719 TACCTGTTAACGTTTTTACAAAGATCTGCAT 33749
| || || | | || || |||||||||||
Sbjct 76629 TGCCGGTGAGGCTCTTCACGAAGATCTGCAT 76599
>seq17562
Length=36101
Score = 95.1 bits (104), Expect = 8e-15
Identities = 149/211 (71%), Gaps = 2/211 (1%)
Strand=Plus/Minus
Query 33540 CACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTC 33599
||||| || || ||| ||| || || |||||||| || | |||||||| | || ||
Sbjct 6246 CACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCCAGTGTGCGGCCATCCTC 6187
Query 33600 CAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGC 33659
| || || ||||||||||||| ||||||||| || | || | || || |||||
Sbjct 6186 GAGCTGCTTGCCGGCAAAAATCAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTG 6127
Query 33660 AATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTT 33718
|| ||| ||| |||| ||| | |||||| || ||||| || | ||||| || |
Sbjct 6126 GATCTTCGCCTTC-ACATTGTCGATGGTGTCCGAGGACTCCACCTCCAAGGTGATGGTCT 6068
Query 33719 TACCTGTTAACGTTTTTACAAAGATCTGCAT 33749
| || || | || || ||||||||||||||
Sbjct 6067 TGCCGGTGAGGGTCTTGACAAAGATCTGCAT 6037
>seq58488
Length=2025148
Score = 91.5 bits (100), Expect = 1e-13
Identities = 149/212 (70%), Gaps = 2/212 (1%)
Strand=Plus/Minus
Query 33540 CACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTC 33599
|||||| || || ||| ||| || || |||||||| || | || ||||| | || ||
Sbjct 706508 CACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCCGCCAGAGTGCGGCCATCCTC 706449
Query 33600 CAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGC 33659
| || || || ||||| |||| ||||||||| || | || | || || |||||
Sbjct 706448 GAGCTGCTTACCAGCAAAGATCAGACGCTGCTGGTCCGGTGGGATGCCCTCCTTGTCCTG 706389
Query 33660 AATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTT 33718
|| ||| |||| ||| ||| | |||||| ||| || || |||| |||||| || |
Sbjct 706388 GATCTTCGCCTTCA-CATTGTCGATGGTGTCCGATGACTCGACCTCAAGCGTGATGGTCT 706330
Query 33719 TACCTGTTAACGTTTTTACAAAGATCTGCATA 33750
| || || | || || || ||||||||||||
Sbjct 706329 TGCCGGTGAGGGTCTTCACGAAGATCTGCATA 706298
Score = 84.2 bits (92), Expect = 1e-11
Identities = 157/228 (69%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582
||||| | || || | ||||| || || ||| ||| || || |||||||| || | |
Sbjct 706069 CCACCACGCAGGCGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCG 706010
Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642
|| ||||| |||| || | || || |||||||| || | |||||||| || | ||
Sbjct 706009 AGGGTGCGGCCGTCCTCAAGCTGCTTGCCGGCAAAGATGAGGCGCTGCTGGTCCGGGGGG 705950
Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701
| || || ||||| || ||| |||| | | ||| | |||||| || || ||
Sbjct 705949 ATGCCCTCCTTGTCCTGGATCTTCGCCTTCA-CGTTGTCGATGGTGTCCGAAGACTCAAC 705891
Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749
|||| |||||| || || || || | || || || |||||||||||
Sbjct 705890 CTCAAGCGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 705843
>seq59033
Length=364465
Score = 89.7 bits (98), Expect = 3e-13
Identities = 158/228 (69%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582
||||| | | ||| | |||||| || ||||| ||| || || ||||||||||| |
Sbjct 25994 CCACCACGAAGACGGAGCACCAAGTGGAGAGTAGACTCCTTCTGAATGTTGTAATCTGCA 26053
Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642
|| ||||| | || || | || || |||||||| |||| |||||||| || | ||
Sbjct 26054 AGGGTGCGACCATCCTCGAGCTGCTTACCGGCAAAGATCAGGCGCTGCTGGTCCGGGGGG 26113
Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701
| ||| || ||||| || ||| ||| || | ||| | |||||| ||||||||
Sbjct 26114 ATACCCTCCTTGTCCTGGATCTTCGCCTTC-ACGTTGTCAATGGTGTCCGAAGATTCCAC 26172
Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749
|| | ||||| || || || || | || || || ||||| |||||
Sbjct 26173 CTCCAGGGTGATGGTCTTGCCGGTGAGGGTCTTCACGAAGATTTGCAT 26220
Score = 89.7 bits (98), Expect = 3e-13
Identities = 158/228 (69%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582
||||| | || || | ||||| || | ||| || || || || |||||||| |
Sbjct 26222 CCACCACGCAGGCGGAGCACCAGGTGCAAGGTGGATTCCTTCTGGATATTGTAATCAGCA 26281
Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642
|| |||||| |||| || | ||| || |||||||| |||| |||||||| || | ||
Sbjct 26282 AGGGTGCGTCCGTCCTCAAGTTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGTGGG 26341
Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701
| || || ||||| || || |||| ||| ||| | |||||| ||| || ||
Sbjct 26342 ATGCCCTCCTTGTCCTGGATCTTTGCCTTCA-CATTGTCGATCGTGTCGGATGACTCAAC 26400
Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749
|||| ||||| || || || || || || || || |||||||||||
Sbjct 26401 CTCAAGTGTGATGGTCTTGCCGGTCAATGTCTTGACGAAGATCTGCAT 26448
>seq19801
Length=2385597
Score = 86.0 bits (94), Expect = 4e-12
Identities = 158/229 (69%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581
|||||| | | || | ||||| || || ||| ||| || || |||||||| || |
Sbjct 1091132 ACCACCACGGAGGCGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGC 1091073
Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641
|| ||||| | || |||| || || |||||||| || | ||||||||| || | ||
Sbjct 1091072 AAGAGTGCGGCCATCCTCCAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCCGGAGG 1091013
Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCAC-GGTGTCGCTTGATTCCA 33700
| || || ||||| || || |||| | | |||| ||||||| |||||||
Sbjct 1091012 AATGCCCTCCTTGTCCTGGATCTTGGCCTTCA-CGTTGTCAATGGTGTCGGAGGATTCCA 1090954
Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749
| |||| ||||| || || || || | || || || |||||||||||
Sbjct 1090953 CTTCAAGTGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 1090905
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 328429431288960
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