Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aegilops_20tauschii_20subsp._20tauschii_20[refseq_20GCF_5F001957025. 1_202017-01-19] 68,538 sequences; 4,327,321,625 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq16495 100 2e-16 seq35796 98.7 7e-16 seq33789 98.7 7e-16 seq17562 95.1 8e-15 seq58488 91.5 1e-13 seq59033 89.7 3e-13 seq19801 86.0 4e-12 >seq16495 Length=532983 Score = 100 bits (110), Expect = 2e-16 Identities = 162/229 (71%), Gaps = 3/229 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | | ||| | ||||| || || ||| |||||| || ||||||||||| | Sbjct 85661 CCACCACGGAGACGGAGAACCAAGTGGAGGGTGGACTCTTTCTGGATGTTGTAATCAGCA 85602 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGAT-CTTGCGG 33641 |||||||| | || || | |||||| |||||||| ||||| |||||||| | | | || Sbjct 85601 AGTGTGCGCCCATCCTCAAGTTGTTTGCCGGCAAAGATCAACCGCTGCTGGTCCGGGGGG 85542 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | || || ||||| || ||| | || |||| ||| | |||||| || || | Sbjct 85541 GATGCCCTCCTTGTCCTAGATCTTC-GCTTTGACATTGTCGATCGTGTCGGAAGACTCAA 85483 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || | ||||| || || || || | ||||| |||||||| ||||| Sbjct 85482 CCTCGAGGGTGATGGTCTTGCCGGTGAGGGTTTTCACAAAGATTTGCAT 85434 >seq35796 Length=307016 Score = 98.7 bits (108), Expect = 7e-16 Identities = 150/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 33540 CACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTC 33599 ||||| || |||||| ||| || || ||||||||||||| ||| ||||| |||| || Sbjct 306218 CACCAGGTGCAGAGTGGACTCCTTCTGAATGTTGTAATCGGCGAGCGTGCGGCCGTCCTC 306277 Query 33600 CAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGC 33659 | || || ||||| || |||| ||||||||||| |||| | || || ||||| Sbjct 306278 GAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGATCCGGCGGGATGCCCTCCTTGTCCTG 306337 Query 33660 AATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTT 33718 || || || | | ||| ||| | |||||| || ||||| |||| ||||| || | Sbjct 306338 GATCTT-TGCCTTACCATTGTCGATGGTGTCAGAGGACTCCACCTCAAGGGTGATAGTCT 306396 Query 33719 TACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || || | | || || ||||||||||| Sbjct 306397 TGCCGGTGAGGCTCTTCACGAAGATCTGCAT 306427 Score = 86.0 bits (94), Expect = 4e-12 Identities = 147/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 33540 CACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTC 33599 ||||| || || ||| ||| || || ||||||||||| | ||| || || |||| || Sbjct 163718 CACCAGGTGCAGGGTGGACTCCTTCTGAATGTTGTAATCAGCGAGAGTACGGCCGTCCTC 163777 Query 33600 CAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGC 33659 | || || || || || |||| ||||||||| || |||| | || || ||||| Sbjct 163778 AAGCTGCTTGCCTGCGAAGATCAGACGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTG 163837 Query 33660 AATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTT 33718 || || || | ||||| ||| | ||||| || ||||| || | ||||| || | Sbjct 163838 GATCTT-TGCCTTAACATTGTCGATTGTGTCAGAGGACTCCACCTCGAGGGTGATAGTCT 163896 Query 33719 TACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || || | || || |||||||||||||| Sbjct 163897 TGCCCGTAAGGGTCTTCACAAAGATCTGCAT 163927 >seq33789 Length=94561 Score = 98.7 bits (108), Expect = 7e-16 Identities = 150/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 33540 CACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTC 33599 ||||| || |||||| ||| || || ||||||||||||| ||| ||||| |||| || Sbjct 76808 CACCAGGTGCAGAGTGGACTCCTTCTGAATGTTGTAATCGGCGAGCGTGCGGCCGTCCTC 76749 Query 33600 CAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGC 33659 | || || ||||| || |||| ||||||||||| |||| | || || ||||| Sbjct 76748 GAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGATCCGGCGGGATGCCCTCCTTGTCCTG 76689 Query 33660 AATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTT 33718 || || || | | ||| ||| | |||||| || ||||| |||| ||||| || | Sbjct 76688 GATCTT-TGCCTTACCATTGTCGATGGTGTCAGAGGACTCCACCTCAAGGGTGATAGTCT 76630 Query 33719 TACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || || | | || || ||||||||||| Sbjct 76629 TGCCGGTGAGGCTCTTCACGAAGATCTGCAT 76599 >seq17562 Length=36101 Score = 95.1 bits (104), Expect = 8e-15 Identities = 149/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 33540 CACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTC 33599 ||||| || || ||| ||| || || |||||||| || | |||||||| | || || Sbjct 6246 CACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCCAGTGTGCGGCCATCCTC 6187 Query 33600 CAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGC 33659 | || || ||||||||||||| ||||||||| || | || | || || ||||| Sbjct 6186 GAGCTGCTTGCCGGCAAAAATCAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTG 6127 Query 33660 AATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTT 33718 || ||| ||| |||| ||| | |||||| || ||||| || | ||||| || | Sbjct 6126 GATCTTCGCCTTC-ACATTGTCGATGGTGTCCGAGGACTCCACCTCCAAGGTGATGGTCT 6068 Query 33719 TACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || || | || || |||||||||||||| Sbjct 6067 TGCCGGTGAGGGTCTTGACAAAGATCTGCAT 6037 >seq58488 Length=2025148 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/212 (70%), Gaps = 2/212 (1%) Strand=Plus/Minus Query 33540 CACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTC 33599 |||||| || || ||| ||| || || |||||||| || | || ||||| | || || Sbjct 706508 CACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCCGCCAGAGTGCGGCCATCCTC 706449 Query 33600 CAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGC 33659 | || || || ||||| |||| ||||||||| || | || | || || ||||| Sbjct 706448 GAGCTGCTTACCAGCAAAGATCAGACGCTGCTGGTCCGGTGGGATGCCCTCCTTGTCCTG 706389 Query 33660 AATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTT 33718 || ||| |||| ||| ||| | |||||| ||| || || |||| |||||| || | Sbjct 706388 GATCTTCGCCTTCA-CATTGTCGATGGTGTCCGATGACTCGACCTCAAGCGTGATGGTCT 706330 Query 33719 TACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || || | || || || |||||||||||| Sbjct 706329 TGCCGGTGAGGGTCTTCACGAAGATCTGCATA 706298 Score = 84.2 bits (92), Expect = 1e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | || || | ||||| || || ||| ||| || || |||||||| || | | Sbjct 706069 CCACCACGCAGGCGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCG 706010 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||||| |||| || | || || |||||||| || | |||||||| || | || Sbjct 706009 AGGGTGCGGCCGTCCTCAAGCTGCTTGCCGGCAAAGATGAGGCGCTGCTGGTCCGGGGGG 705950 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | || || ||||| || ||| |||| | | ||| | |||||| || || || Sbjct 705949 ATGCCCTCCTTGTCCTGGATCTTCGCCTTCA-CGTTGTCGATGGTGTCCGAAGACTCAAC 705891 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 |||| |||||| || || || || | || || || ||||||||||| Sbjct 705890 CTCAAGCGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 705843 >seq59033 Length=364465 Score = 89.7 bits (98), Expect = 3e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | | ||| | |||||| || ||||| ||| || || ||||||||||| | Sbjct 25994 CCACCACGAAGACGGAGCACCAAGTGGAGAGTAGACTCCTTCTGAATGTTGTAATCTGCA 26053 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||||| | || || | || || |||||||| |||| |||||||| || | || Sbjct 26054 AGGGTGCGACCATCCTCGAGCTGCTTACCGGCAAAGATCAGGCGCTGCTGGTCCGGGGGG 26113 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | ||| || ||||| || ||| ||| || | ||| | |||||| |||||||| Sbjct 26114 ATACCCTCCTTGTCCTGGATCTTCGCCTTC-ACGTTGTCAATGGTGTCCGAAGATTCCAC 26172 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | ||||| || || || || | || || || ||||| ||||| Sbjct 26173 CTCCAGGGTGATGGTCTTGCCGGTGAGGGTCTTCACGAAGATTTGCAT 26220 Score = 89.7 bits (98), Expect = 3e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | || || | ||||| || | ||| || || || || |||||||| | Sbjct 26222 CCACCACGCAGGCGGAGCACCAGGTGCAAGGTGGATTCCTTCTGGATATTGTAATCAGCA 26281 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || |||||| |||| || | ||| || |||||||| |||| |||||||| || | || Sbjct 26282 AGGGTGCGTCCGTCCTCAAGTTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGTGGG 26341 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | || || ||||| || || |||| ||| ||| | |||||| ||| || || Sbjct 26342 ATGCCCTCCTTGTCCTGGATCTTTGCCTTCA-CATTGTCGATCGTGTCGGATGACTCAAC 26400 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 |||| ||||| || || || || || || || || ||||||||||| Sbjct 26401 CTCAAGTGTGATGGTCTTGCCGGTCAATGTCTTGACGAAGATCTGCAT 26448 >seq19801 Length=2385597 Score = 86.0 bits (94), Expect = 4e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | | || | ||||| || || ||| ||| || || |||||||| || | Sbjct 1091132 ACCACCACGGAGGCGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGC 1091073 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || ||||| | || |||| || || |||||||| || | ||||||||| || | || Sbjct 1091072 AAGAGTGCGGCCATCCTCCAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCCGGAGG 1091013 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCAC-GGTGTCGCTTGATTCCA 33700 | || || ||||| || || |||| | | |||| ||||||| ||||||| Sbjct 1091012 AATGCCCTCCTTGTCCTGGATCTTGGCCTTCA-CGTTGTCAATGGTGTCGGAGGATTCCA 1090954 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | |||| ||||| || || || || | || || || ||||||||||| Sbjct 1090953 CTTCAAGTGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 1090905 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328429431288960