Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aegilops_20tauschii_20subsp._20tauschii_20[refseq_20GCF_5F001957025. 1_202017-01-19] 68,538 sequences; 4,327,321,625 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq17655 113 6e-20 seq59844 96.9 4e-15 seq16381 96.9 4e-15 seq66718 89.7 6e-13 >seq17655 Length=1090806 Score = 113 bits (124), Expect = 6e-20 Identities = 305/456 (67%), Gaps = 18/456 (4%) Strand=Plus/Minus Query 122371 TAGTCCCCGACCCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 122430 || || ||||| |||||||| |||||||||||||| || | || ||| ||||| Sbjct 172839 TACTCGCCGACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGCAGCGAGATGAGCTCCATC 172780 Query 122431 AAGTCAAATGGATTCTTCGCGTTCCAAATGGG-TGGCACCCCAACTTGTTTGAGGAGACG 122489 |||| || || || | ||||| | | | ||| |||| | | ||| || || Sbjct 172779 CAGTCGAACGGGTTGGTGGCGTTGTACAGCTTCTTGCAGCCCAGCGCCAT-GAGCAGGCG 172721 Query 122490 ATCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGGTTACA 122549 || | ||| |||| ||||||| | ||| || |||||| |||| ||| || Sbjct 172720 GTCGGCCACGAACTCGATGTACTGGCTCATGAGGTCGCCGTTCATGCCGACGAGCGCGCA 172661 Query 122550 TGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATGGCGTG 122609 || || ||||| ||| |||| | |||| || || || ||||| ||||| || Sbjct 172660 GGGCAGCGCGTCGCAGACGAACTCCCTCTCGATGTCCACGGCCTCGGAGACGATCTCGAA 172601 Query 122610 GATAGTTTCGGTAGTGGGTCTA--TTAC---GCA--AAGTCTT-GAAGAGCTCCACGGCA 122661 || ||| | | | || | || | ||| | ||| | || ||| || ||| Sbjct 172600 GACG----CGGGACTCG-TCCAGCTTGCCGCGCAGGATGTCGTAGAGGAGG--CA-GGCG 172549 Query 122662 AACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGC 122721 || || ||| || ||||| || ||||| || || || || |||||| || || ||| Sbjct 172548 AAGTCGCAGTGCAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCCGGC 172489 Query 122722 ATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCC 122781 ||||| || |||||||| | ||| | || |||||||| || |||||||||||||| ||| Sbjct 172488 ATGAGCCCGCGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCGGAGAAGAAGATGCCC 172429 Query 122782 TCCACACACGCAAACGCAAAAAGGCGTTCGGCGAAG 122817 || || || || || || | | ||| ||||||||| Sbjct 172428 TCGACGCAGGCGAAGGCGACGATGCGCTCGGCGAAG 172393 >seq59844 Length=164292 Score = 96.9 bits (106), Expect = 4e-15 Identities = 194/287 (68%), Gaps = 12/287 (4%) Strand=Plus/Minus Query 11453 TCAAAACGACCCGGGCGAAGGAGGGCGTCATCAAGGATATCCACGCGATTAGTGGCCGCA 11512 ||||| || || || | ||| | ||| ||| | || || | | || ||||| ||| Sbjct 23344 TCAAAGCGTCCAGGTCTAAGTAAAGCGGAATCCAAAATGTCAGCCCTGTTGGTGGCAGCA 23285 Query 11513 ATAACCACAATGCCAGTCTCATTGTCAAAGCCATCCATCTCGGTGAGTAATTGATTAATT 11572 | ||| | |||||||| | ||||| ||||||||||| || |||| ||||| | Sbjct 23284 ACAACAATGATGCCAGTGTTTCCCTCAAAACCATCCATCTCAGTCAGTAGCTGATTGAGA 23225 Query 11573 GTTTGTTCTCTCTCATCATTTGCTGGCATACCACCAGCAC-TG-----CGTTGCTTGCCC 11626 || || || || ||||| || | |||||| || || | |||| | || Sbjct 23224 GTCTGCTCCCTTTCATCGTTCCC------ACCACCGATACCTGTTCCTCTTTGCCTCCCA 23171 Query 11627 ACCGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAG 11686 || |||||||| ||||||| || || || || || ||| || ||| | | ||| Sbjct 23170 ACAGCATCAATTTCATCAACAAACACTATGCAAGGAGCATTCTCCTTGGCCTTCTTGAAG 23111 Query 11687 AGATCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAA 11733 ||||| ||||| | |||||| |||||||||||||||||||| || Sbjct 23110 AGATCACGAACACGGGAGGCACCAACACCAACAAACATCTCCACGAA 23064 >seq16381 Length=215813 Score = 96.9 bits (106), Expect = 4e-15 Identities = 213/316 (67%), Gaps = 4/316 (1%) Strand=Plus/Plus Query 11540 AAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGGC 11599 ||||| |||||||| ||||| | || ||||| || || || ||||| || || | | Sbjct 82316 AAGCCGTCCATCTCCGTGAGCAGCTGGTTAATGGTCTGCTCCCTCTCGTCGTTCCCCC-C 82374 Query 11600 ATACCA--CCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATAC 11657 | ||| || |||| || ||| | || || || ||||||||||| |||||||| || | Sbjct 82375 AC-CCATTCCGGCACCACGCTGCCTCCCGACGGCGTCAATCTCATCGATGAAGACGATGC 82433 Query 11658 ATGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAA 11717 | || || | ||| | || ||||| || | ||||| || |||||||| | Sbjct 82434 AGGGCGCCTTGGCCTTGGCCTTCTCGAAGAGGTCCCTCACCCTGGACGCGCCCACACCGA 82493 Query 11718 CAAACATCTCCACAAAGTTTGCGGCAGAGCACTGGATGAATGGGACATTTGATTCACCCG 11777 | || | ||| || || | | || | ||| || ||| || || | || || | Sbjct 82494 CGAAGAGCTCGACGAACTCAGACGCGGCGCAGGAGAAGAAGGGCACCCCGGCCTCCCCGG 82553 Query 11778 CGATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGGCTTACCCGCGAGAAGGGCGCCTC 11837 ||| ||| |||||||| || ||||| || || || ||| || |||| ||| ||| Sbjct 82554 CGACGGCCCGGGCGAGCAGCGTCTTCCCGGTCCCGGGCGGGCCGACGAGCAGGCAGCCCT 82613 Query 11838 GGGGGATCTTGGCACC 11853 |||||||||||| || Sbjct 82614 TGGGGATCTTGGCCCC 82629 >seq66718 Length=721455 Score = 89.7 bits (98), Expect = 6e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 111940 CTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTG 111999 ||| ||||| || || ||||||||||| |||||||| | || ||| | ||| | || Sbjct 180804 CTGAGGTCTCGGGGTGCCAGCATTGAAAAGGGTTGGCGAAGCATGAGTAAACCAGCGCTG 180863 Query 112000 GGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGC 112059 |||||| | ||| || | | |||| |||||||| ||| ||| || || | || Sbjct 180864 GGACATGAGATGGTACGTTCTGATGGCAGAGTCAATGTCATCCTTGTGTATCCCTACTGA 180923 Query 112060 GACCCGCATGAACATGTACTGTGGGGTTTCCATGAGGATGCCATCGAGCCGTTGAAGATA 112119 |||| ||| ||||||| ||| || | |||| || | ||| | ||| | || || Sbjct 180924 AACCCTCATTAACATGTGCTGCGGCCTCTCCACGACAACTCCACCAAGCTTCAGGAGGTA 180983 Query 112120 GCTCTTCTCAAGGGTTTTGAGACCAAAGTAACCAAAATCATAGTCCC 112166 | | |||| || || |||| |||||||| || |||| |||||| Sbjct 180984 GGACCTCTCCAGAGTCTTGAAGCCAAAGTAGTCATAATCGAAGTCCC 181030 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627493949284800