Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Aegilops_20tauschii_20subsp._20tauschii_20[refseq_20GCF_5F001957025.
1_202017-01-19] 68,538 sequences; 4,327,321,625 total letters
Query= NC_028091.1
Length=196300
Score E
Sequences producing significant alignments: (Bits) Value
seq17655 113 6e-20
seq59844 96.9 4e-15
seq16381 96.9 4e-15
seq66718 89.7 6e-13
>seq17655
Length=1090806
Score = 113 bits (124), Expect = 6e-20
Identities = 305/456 (67%), Gaps = 18/456 (4%)
Strand=Plus/Minus
Query 122371 TAGTCCCCGACCCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 122430
|| || ||||| |||||||| |||||||||||||| || | || ||| |||||
Sbjct 172839 TACTCGCCGACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGCAGCGAGATGAGCTCCATC 172780
Query 122431 AAGTCAAATGGATTCTTCGCGTTCCAAATGGG-TGGCACCCCAACTTGTTTGAGGAGACG 122489
|||| || || || | ||||| | | | ||| |||| | | ||| || ||
Sbjct 172779 CAGTCGAACGGGTTGGTGGCGTTGTACAGCTTCTTGCAGCCCAGCGCCAT-GAGCAGGCG 172721
Query 122490 ATCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGGTTACA 122549
|| | ||| |||| ||||||| | ||| || |||||| |||| ||| ||
Sbjct 172720 GTCGGCCACGAACTCGATGTACTGGCTCATGAGGTCGCCGTTCATGCCGACGAGCGCGCA 172661
Query 122550 TGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATGGCGTG 122609
|| || ||||| ||| |||| | |||| || || || ||||| ||||| ||
Sbjct 172660 GGGCAGCGCGTCGCAGACGAACTCCCTCTCGATGTCCACGGCCTCGGAGACGATCTCGAA 172601
Query 122610 GATAGTTTCGGTAGTGGGTCTA--TTAC---GCA--AAGTCTT-GAAGAGCTCCACGGCA 122661
|| ||| | | | || | || | ||| | ||| | || ||| || |||
Sbjct 172600 GACG----CGGGACTCG-TCCAGCTTGCCGCGCAGGATGTCGTAGAGGAGG--CA-GGCG 172549
Query 122662 AACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGC 122721
|| || ||| || ||||| || ||||| || || || || |||||| || || |||
Sbjct 172548 AAGTCGCAGTGCAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCCGGC 172489
Query 122722 ATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCC 122781
||||| || |||||||| | ||| | || |||||||| || |||||||||||||| |||
Sbjct 172488 ATGAGCCCGCGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCGGAGAAGAAGATGCCC 172429
Query 122782 TCCACACACGCAAACGCAAAAAGGCGTTCGGCGAAG 122817
|| || || || || || | | ||| |||||||||
Sbjct 172428 TCGACGCAGGCGAAGGCGACGATGCGCTCGGCGAAG 172393
>seq59844
Length=164292
Score = 96.9 bits (106), Expect = 4e-15
Identities = 194/287 (68%), Gaps = 12/287 (4%)
Strand=Plus/Minus
Query 11453 TCAAAACGACCCGGGCGAAGGAGGGCGTCATCAAGGATATCCACGCGATTAGTGGCCGCA 11512
||||| || || || | ||| | ||| ||| | || || | | || ||||| |||
Sbjct 23344 TCAAAGCGTCCAGGTCTAAGTAAAGCGGAATCCAAAATGTCAGCCCTGTTGGTGGCAGCA 23285
Query 11513 ATAACCACAATGCCAGTCTCATTGTCAAAGCCATCCATCTCGGTGAGTAATTGATTAATT 11572
| ||| | |||||||| | ||||| ||||||||||| || |||| ||||| |
Sbjct 23284 ACAACAATGATGCCAGTGTTTCCCTCAAAACCATCCATCTCAGTCAGTAGCTGATTGAGA 23225
Query 11573 GTTTGTTCTCTCTCATCATTTGCTGGCATACCACCAGCAC-TG-----CGTTGCTTGCCC 11626
|| || || || ||||| || | |||||| || || | |||| | ||
Sbjct 23224 GTCTGCTCCCTTTCATCGTTCCC------ACCACCGATACCTGTTCCTCTTTGCCTCCCA 23171
Query 11627 ACCGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAG 11686
|| |||||||| ||||||| || || || || || ||| || ||| | | |||
Sbjct 23170 ACAGCATCAATTTCATCAACAAACACTATGCAAGGAGCATTCTCCTTGGCCTTCTTGAAG 23111
Query 11687 AGATCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAA 11733
||||| ||||| | |||||| |||||||||||||||||||| ||
Sbjct 23110 AGATCACGAACACGGGAGGCACCAACACCAACAAACATCTCCACGAA 23064
>seq16381
Length=215813
Score = 96.9 bits (106), Expect = 4e-15
Identities = 213/316 (67%), Gaps = 4/316 (1%)
Strand=Plus/Plus
Query 11540 AAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGGC 11599
||||| |||||||| ||||| | || ||||| || || || ||||| || || | |
Sbjct 82316 AAGCCGTCCATCTCCGTGAGCAGCTGGTTAATGGTCTGCTCCCTCTCGTCGTTCCCCC-C 82374
Query 11600 ATACCA--CCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATAC 11657
| ||| || |||| || ||| | || || || ||||||||||| |||||||| || |
Sbjct 82375 AC-CCATTCCGGCACCACGCTGCCTCCCGACGGCGTCAATCTCATCGATGAAGACGATGC 82433
Query 11658 ATGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAA 11717
| || || | ||| | || ||||| || | ||||| || |||||||| |
Sbjct 82434 AGGGCGCCTTGGCCTTGGCCTTCTCGAAGAGGTCCCTCACCCTGGACGCGCCCACACCGA 82493
Query 11718 CAAACATCTCCACAAAGTTTGCGGCAGAGCACTGGATGAATGGGACATTTGATTCACCCG 11777
| || | ||| || || | | || | ||| || ||| || || | || || |
Sbjct 82494 CGAAGAGCTCGACGAACTCAGACGCGGCGCAGGAGAAGAAGGGCACCCCGGCCTCCCCGG 82553
Query 11778 CGATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGGCTTACCCGCGAGAAGGGCGCCTC 11837
||| ||| |||||||| || ||||| || || || ||| || |||| ||| |||
Sbjct 82554 CGACGGCCCGGGCGAGCAGCGTCTTCCCGGTCCCGGGCGGGCCGACGAGCAGGCAGCCCT 82613
Query 11838 GGGGGATCTTGGCACC 11853
|||||||||||| ||
Sbjct 82614 TGGGGATCTTGGCCCC 82629
>seq66718
Length=721455
Score = 89.7 bits (98), Expect = 6e-13
Identities = 156/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 111940 CTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTG 111999
||| ||||| || || ||||||||||| |||||||| | || ||| | ||| | ||
Sbjct 180804 CTGAGGTCTCGGGGTGCCAGCATTGAAAAGGGTTGGCGAAGCATGAGTAAACCAGCGCTG 180863
Query 112000 GGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGC 112059
|||||| | ||| || | | |||| |||||||| ||| ||| || || | ||
Sbjct 180864 GGACATGAGATGGTACGTTCTGATGGCAGAGTCAATGTCATCCTTGTGTATCCCTACTGA 180923
Query 112060 GACCCGCATGAACATGTACTGTGGGGTTTCCATGAGGATGCCATCGAGCCGTTGAAGATA 112119
|||| ||| ||||||| ||| || | |||| || | ||| | ||| | || ||
Sbjct 180924 AACCCTCATTAACATGTGCTGCGGCCTCTCCACGACAACTCCACCAAGCTTCAGGAGGTA 180983
Query 112120 GCTCTTCTCAAGGGTTTTGAGACCAAAGTAACCAAAATCATAGTCCC 112166
| | |||| || || |||| |||||||| || |||| ||||||
Sbjct 180984 GGACCTCTCCAGAGTCTTGAAGCCAAAGTAGTCATAATCGAAGTCCC 181030
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 627493949284800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |