Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Aegilops_20tauschii_20subsp._20tauschii_20[refseq_20GCF_5F001957025.
1_202017-01-19] 68,538 sequences; 4,327,321,625 total letters
Query= NC_028092.1
Length=193301
Score E
Sequences producing significant alignments: (Bits) Value
seq17655 150 2e-31
seq58470 125 9e-24
seq55079 111 2e-19
seq16381 93.3 5e-14
seq59844 84.2 3e-11
>seq17655
Length=1090806
Score = 150 bits (166), Expect = 2e-31
Identities = 313/454 (69%), Gaps = 14/454 (3%)
Strand=Plus/Minus
Query 129728 TAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCATA 129787
|| || || || ||||||||||||||||| ||||| || | || ||| ||||||
Sbjct 172839 TACTCGCCGACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGCAGCGAGATGAGCTCCATC 172780
Query 129788 AAATCAAATGGGTTCTTTGAGTTCCAAAT-TGCTGGCACTCCAATCTGTTTGAGGAGACG 129846
| || || ||||| | | ||| | | | || ||| ||| | |||| || ||
Sbjct 172779 CAGTCGAACGGGTTGGTGGCGTTGTACAGCTTCTTGCAGCCCAG-CGCCATGAGCAGGCG 172721
Query 129847 ATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGGTTACA 129906
|| | ||| |||| ||||||| ||| ||| |||||| |||| ||| ||
Sbjct 172720 GTCGGCCACGAACTCGATGTACTGGCTCATGAGGTCGCCGTTCATGCCGACGAGCGCGCA 172661
Query 129907 TGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGCGTG 129966
|| |||||||| ||| |||| || |||| |||||||| || || ||||| ||
Sbjct 172660 GGGCAGCGCGTCGCAGACGAACTCCCTCTCGATGTCCACGGCCTCGGAGACGATCTCGAA 172601
Query 129967 AATG---GTCTCCGTGCCAGGTCTATTGCGCA--AAGTCTT-GAAGAGTTCCACGGCAAA 130020
| | | ||| || |||| | | ||||| | ||| | || ||| || ||| ||
Sbjct 172600 GACGCGGGACTC-GT-CCAGCT-TGCCGCGCAGGATGTCGTAGAGGAGG--CA-GGCGAA 172547
Query 130021 CTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCAT 130080
|| ||| || |||||||| ||||||||||| || || |||||| || || |||||
Sbjct 172546 GTCGCAGTGCAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCCGGCAT 172487
Query 130081 GAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTC 130140
||| || |||||||| | |||||| || || || || ||||| ||||||||||| |||||
Sbjct 172486 GAGCCCGCGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCGGAGAAGAAGATGCCCTC 172427
Query 130141 CACACACGCGAACGCAAAGAGACGCTCAGCAAAG 130174
|| || ||||| || | || ||||| || |||
Sbjct 172426 GACGCAGGCGAAGGCGACGATGCGCTCGGCGAAG 172393
>seq58470
Length=785708
Score = 125 bits (138), Expect = 9e-24
Identities = 434/664 (65%), Gaps = 16/664 (2%)
Strand=Plus/Minus
Query 13886 CGGACAGCGCGGATGGCACACTCATTGAGGAGGTTCGCCAAGTCGGCACCAGAGAAGCCC 13945
||| | ||| ||||||| ||| || | |||||| || | |||||| || ||| ||
Sbjct 105358 CGGCCGGCGAGGATGGCGGCCTCGTTCATGAGGTTGGCGAGGTCGGCGCCGCTGAACCCG 105299
Query 13946 GTCGTTTGCTTTGCGATGGCGTGTAGCTTCACATCGTCAGCCAACTTCTTGTCTCGGGC- 14004
| ||| || | || | || || ||| || ||| |||||||| | | ||
Sbjct 105298 GGCGTGCGCATGGCCACCACGCTGAGGGACACGCCGGGGTCCAGCTTCTTGT-TGGCGCT 105240
Query 14005 GTGGACACCCAAAATCTTCTCGCGACCGCGCACACTGGGTAGGGACACGGTGATCTTACG 14064
||| || | | |||| |||||| |||||||| ||| || ||||| | || ||
Sbjct 105239 GTGCACCCTGAGGATCTCCTCGCGGCCGCGCACGTCGGGCAGCCCCACGGACACCTGCCG 105180
Query 14065 ATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCCGC 14124
|| ||||| || |||||||| || ||| |||| ||||| || |||||||| || ||
Sbjct 105179 GTCGAAGCGTCCCGGGCGGAGCAGCGCGGCGTCGAGGATCTCCGGCCGGTTCGTGGCGGC 105120
Query 14125 GATGACAACGATGCCCGTCTCGTTATCAAAGCCATCCATCTCAGTCAAGAGTTGATTGAT 14184
|||||| | || ||| | ||| ||||| |||||||| || | || || || |
Sbjct 105119 GATGACGATGACGCCGCTGTCGCCGCGGAAGCCGTCCATCTCGGTGAGCAGCTGGTTCAG 105060
Query 14185 GGTTTGTTCGCGTTCATCATT-CGCAGGCATACCACCCGCACTGCGTTGCTTACCGACGG 14243
|| || ||||| || || || | | || | |||| | ||| ||| |||||||
Sbjct 105059 CGTCTGCTCGCGCTCGTCGTTGCCCCCGCCGATG-CCCGTGCCGCGCTGCCGGCCGACGG 105001
Query 14244 CGTCAATTTCATCGATGAAAACGATACATGGTTGATTTTCACGGGCAACTTCAAAGATAT 14303
|||| || || |||||||| || | || || || || ||| | |||| |
Sbjct 105000 CGTCGATCTCGTCGATGAACACCAGGCACGGCGCGTTGTCCTTGGCCTTGTTGAAGAGGT 104941
Query 14304 CTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATTGGCGGCGGAACATT 14363
| ||||| | | || || || ||||| |||||||| | || | | |||| ||
Sbjct 104940 CCCGCACCCGCGACGCGCCCACGCCCACGAACATCTCGATGAACTCCGACCCGGA-CAGC 104882
Query 14364 G-GATGAAGGGGACGTTAGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTC 14422
| || |||||| ||| | || |||||||| || ||| || || |||||||||||
Sbjct 104881 GAGAAGAAGGGCACGGCGGCCTCGCCCGCGATCGCCTTGGCCAGCAGCGTCTTCCCCGTT 104822
Query 14423 CCTGGTTTCCCTGCGAGAAGGGCACCACGT--GGGATCC-TGGCACCACTGCC--AAAGT 14477
|| || || | || | ||||| | | ||||||| || | |||| ||| || |
Sbjct 104821 CCCGGCGGGCCGACCAG--GAGCACCCCCTTGGGGATCCTTGCCCCCACCGCCGTGAACT 104764
Query 14478 AGCGTTCAGGTTGTTTAAGGAAGTCCACGATTTCTTCCAATTCATCCTTCGCGGCGTCGA 14537
| ||||| || ||||| | |||||| || | || || | |||||| |||| |
Sbjct 104763 TG---TCAGGGAACTTGAGGAACTGCACGATCTCCTGGAAGTCCTGCTTCGCCTCGTCCA 104707
Query 14538 TGCC 14541
|||
Sbjct 104706 CGCC 104703
>seq55079
Length=1765451
Score = 111 bits (122), Expect = 2e-19
Identities = 236/351 (67%), Gaps = 6/351 (2%)
Strand=Plus/Minus
Query 11856 GAGGAGACGCCCTTCTATCCACGATCCGTCTATGGCGTCTCAAAGGTTGCGGCACATTGG 11915
|||| ||||||||| | || || ||| ||| | || | | ||||| || || || |||
Sbjct 1458255 GAGGCCACGCCCTTCCACCCGCGCTCCCCCTACGCCGCCGCCAAGGTCGCCGCGCACTGG 1458196
Query 11916 CTCGTGAAGAATTACCGAGAATCCTATGGTCTCTTTGCGTGCTCTGGTATTCTCTTCAAC 11975
| || ||||| || | || || ||||| || ||| || | |||||||||
Sbjct 1458195 TACACCGTCAACTACCGCGAGGCGTACGGCCTCTTCGCCTGCAACGGCGTGCTCTTCAAC 1458136
Query 11976 CACGAGTCACCCCGTCGTGGCCCGGATTTCGTGACAAAGAAGATCACCGATGGTATCAAA 12035
|||||||| ||||| || ||| | | ||||| || ||||||||| | |||
Sbjct 1458135 CACGAGTCCCCCCGGCGCGGCGAGAACTTCGTCACCCGCAAGATCACCCGCGCCATCGGC 1458076
Query 12036 CAAATCGTGGCGGGTG---AGAGGGAGTTCATTGAATTGGGGAACCTCAACGCCGAGAGG 12092
| ||| || ||| ||| || || | | || |||||| ||||| |||
Sbjct 1458075 CGCATCAAGGTGGGGCTCCAGACCAAGGTCTTCC---TCGGCAACCTCTCCGCCGCCAGG 1458019
Query 12093 GACTGGGGACATGCCAAGGACTATGTTGAAGCCATGTGGCTCGTACTTCAACAAGAAGAG 12152
|||||||| ||| |||||| || || |||||||||||| | || || || || ||
Sbjct 1458018 GACTGGGGCTTCGCCGGGGACTACGTGGAGGCCATGTGGCTCATGCTCCAGCAGGACAAG 1457959
Query 12153 GCGGACGAATATGTCGTCGCGACGGGGGAGACACACTCCGTCAGGGAGTTC 12203
| ||||| ||||||||||| || | |||| ||| |||| |||||||
Sbjct 1457958 CCTGACGACTATGTCGTCGCCACCGAGGAGTGCCACACCGTGGAGGAGTTC 1457908
>seq16381
Length=215813
Score = 93.3 bits (102), Expect = 5e-14
Identities = 278/421 (66%), Gaps = 10/421 (2%)
Strand=Plus/Plus
Query 14051 ACGGTGATCTTACGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATG 14110
||||||| || ||||| || || ||||| || || || || ||| || | |||
Sbjct 82214 ACGGTGACCTGCCGATCGAACCGCCCTGGCCGCAGAAGCGCCGAGTCGAGCACATCCGGC 82273
Query 14111 CGGTTCGTCGCCGCGATGACAACGATGCCC--GTCTCGTTATCAAAGCCATCCATCTCAG 14168
| ||| ||||| |||| || | || || || || | ||||| |||||||| |
Sbjct 82274 CTGTTGGTCGCGGCGAGCACGATGACACCGCTGTTTCCGGAG--AAGCCGTCCATCTCCG 82331
Query 14169 TCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCAGGCATACCA--CCCGCACT 14226
| | || || || ||||| || || | || || ||| | || ||| || ||||
Sbjct 82332 TGAGCAGCTGGTTAATGGTCTGCTCCCTCTCGTCGTTCCCCC-CAC-CCATTCCGGCACC 82389
Query 14227 GCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATACATGGTTGATTTTCACG 14286
|| ||| | |||||||||||||| ||||||||||| ||||| || || || |
Sbjct 82390 ACGCTGCCTCCCGACGGCGTCAATCTCATCGATGAAGACGATGCAGGGCGCCTTGGCCTT 82449
Query 14287 GGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAA 14346
||| || |||| || | ||| || || || ||||| || || | ||| || ||
Sbjct 82450 GGCCTTCTCGAAGAGGTCCCTCACCCTGGACGCGCCCACACCGACGAAGAGCTCGACGAA 82509
Query 14347 ATTGGCGGCGGAACATTGGATGAAGGGGACGTTAGATTCACCCGCGATGGCTCGGGCGAG 14406
| | |||| || || |||||| || | || || |||| ||| ||||||||
Sbjct 82510 CTCAGACGCGGCGCAGGAGAAGAAGGGCACCCCGGCCTCCCCGGCGACGGCCCGGGCGAG 82569
Query 14407 GAGGGTCTTCCCCGTCCCTGGTTTCCCTGCGAGAAGGGCACCACGT-GGGATCCTGGCAC 14465
|| |||||||| ||||| || || |||| | |||| | | | |||||| |||| |
Sbjct 82570 CAGCGTCTTCCCGGTCCCGGGCGGGCCGACGAGCA-GGCAGCCCTTGGGGATCTTGGCCC 82628
Query 14466 C 14466
|
Sbjct 82629 C 82629
>seq59844
Length=164292
Score = 84.2 bits (92), Expect = 3e-11
Identities = 164/239 (69%), Gaps = 10/239 (4%)
Strand=Plus/Minus
Query 14113 GTTCGTCGCCGCGATGACAACGATGCCCGTCTCGTTATCAAAGCCATCCATCTCAGTCAA 14172
||| || || || | |||| |||||| || | ||||| ||||||||||||||||
Sbjct 23297 GTTGGTGGCAGCAACAACAATGATGCCAGTGTTTCCCTCAAAACCATCCATCTCAGTCAG 23238
Query 14173 GAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCAGGCATACC---ACCCGCACTGCG 14229
|| ||||||| || || || | |||||| ||| || ||| ||| | | |
Sbjct 23237 TAGCTGATTGAGAGTCTGCTCCCTTTCATCGTTCCCA---CCACCGATACCTGTTCCTCT 23181
Query 14230 TTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATACATGGTTGATTTTCACGGGC 14289
|||| | || || || ||||||||||| | || || || || || ||| || |||
Sbjct 23180 TTGCCTCCCAACAGCATCAATTTCATCAACAAACACTATGCAAGGAGCATTCTCCTTGGC 23121
Query 14290 AACTTC--AAAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAA 14346
|||| |||| ||| || || | |||||| ||||| |||||||||||||| ||
Sbjct 23120 --CTTCTTGAAGAGATCACGAACACGGGAGGCACCAACACCAACAAACATCTCCACGAA 23064
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 617905371103280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |