Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aegilops_20tauschii_20subsp._20tauschii_20[refseq_20GCF_5F001957025. 1_202017-01-19] 68,538 sequences; 4,327,321,625 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq17655 150 2e-31 seq58470 125 9e-24 seq55079 111 2e-19 seq16381 93.3 5e-14 seq59844 84.2 3e-11 >seq17655 Length=1090806 Score = 150 bits (166), Expect = 2e-31 Identities = 313/454 (69%), Gaps = 14/454 (3%) Strand=Plus/Minus Query 129728 TAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCATA 129787 || || || || ||||||||||||||||| ||||| || | || ||| |||||| Sbjct 172839 TACTCGCCGACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGCAGCGAGATGAGCTCCATC 172780 Query 129788 AAATCAAATGGGTTCTTTGAGTTCCAAAT-TGCTGGCACTCCAATCTGTTTGAGGAGACG 129846 | || || ||||| | | ||| | | | || ||| ||| | |||| || || Sbjct 172779 CAGTCGAACGGGTTGGTGGCGTTGTACAGCTTCTTGCAGCCCAG-CGCCATGAGCAGGCG 172721 Query 129847 ATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGGTTACA 129906 || | ||| |||| ||||||| ||| ||| |||||| |||| ||| || Sbjct 172720 GTCGGCCACGAACTCGATGTACTGGCTCATGAGGTCGCCGTTCATGCCGACGAGCGCGCA 172661 Query 129907 TGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGCGTG 129966 || |||||||| ||| |||| || |||| |||||||| || || ||||| || Sbjct 172660 GGGCAGCGCGTCGCAGACGAACTCCCTCTCGATGTCCACGGCCTCGGAGACGATCTCGAA 172601 Query 129967 AATG---GTCTCCGTGCCAGGTCTATTGCGCA--AAGTCTT-GAAGAGTTCCACGGCAAA 130020 | | | ||| || |||| | | ||||| | ||| | || ||| || ||| || Sbjct 172600 GACGCGGGACTC-GT-CCAGCT-TGCCGCGCAGGATGTCGTAGAGGAGG--CA-GGCGAA 172547 Query 130021 CTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCAT 130080 || ||| || |||||||| ||||||||||| || || |||||| || || ||||| Sbjct 172546 GTCGCAGTGCAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCCGGCAT 172487 Query 130081 GAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTC 130140 ||| || |||||||| | |||||| || || || || ||||| ||||||||||| ||||| Sbjct 172486 GAGCCCGCGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCGGAGAAGAAGATGCCCTC 172427 Query 130141 CACACACGCGAACGCAAAGAGACGCTCAGCAAAG 130174 || || ||||| || | || ||||| || ||| Sbjct 172426 GACGCAGGCGAAGGCGACGATGCGCTCGGCGAAG 172393 >seq58470 Length=785708 Score = 125 bits (138), Expect = 9e-24 Identities = 434/664 (65%), Gaps = 16/664 (2%) Strand=Plus/Minus Query 13886 CGGACAGCGCGGATGGCACACTCATTGAGGAGGTTCGCCAAGTCGGCACCAGAGAAGCCC 13945 ||| | ||| ||||||| ||| || | |||||| || | |||||| || ||| || Sbjct 105358 CGGCCGGCGAGGATGGCGGCCTCGTTCATGAGGTTGGCGAGGTCGGCGCCGCTGAACCCG 105299 Query 13946 GTCGTTTGCTTTGCGATGGCGTGTAGCTTCACATCGTCAGCCAACTTCTTGTCTCGGGC- 14004 | ||| || | || | || || ||| || ||| |||||||| | | || Sbjct 105298 GGCGTGCGCATGGCCACCACGCTGAGGGACACGCCGGGGTCCAGCTTCTTGT-TGGCGCT 105240 Query 14005 GTGGACACCCAAAATCTTCTCGCGACCGCGCACACTGGGTAGGGACACGGTGATCTTACG 14064 ||| || | | |||| |||||| |||||||| ||| || ||||| | || || Sbjct 105239 GTGCACCCTGAGGATCTCCTCGCGGCCGCGCACGTCGGGCAGCCCCACGGACACCTGCCG 105180 Query 14065 ATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCCGC 14124 || ||||| || |||||||| || ||| |||| ||||| || |||||||| || || Sbjct 105179 GTCGAAGCGTCCCGGGCGGAGCAGCGCGGCGTCGAGGATCTCCGGCCGGTTCGTGGCGGC 105120 Query 14125 GATGACAACGATGCCCGTCTCGTTATCAAAGCCATCCATCTCAGTCAAGAGTTGATTGAT 14184 |||||| | || ||| | ||| ||||| |||||||| || | || || || | Sbjct 105119 GATGACGATGACGCCGCTGTCGCCGCGGAAGCCGTCCATCTCGGTGAGCAGCTGGTTCAG 105060 Query 14185 GGTTTGTTCGCGTTCATCATT-CGCAGGCATACCACCCGCACTGCGTTGCTTACCGACGG 14243 || || ||||| || || || | | || | |||| | ||| ||| ||||||| Sbjct 105059 CGTCTGCTCGCGCTCGTCGTTGCCCCCGCCGATG-CCCGTGCCGCGCTGCCGGCCGACGG 105001 Query 14244 CGTCAATTTCATCGATGAAAACGATACATGGTTGATTTTCACGGGCAACTTCAAAGATAT 14303 |||| || || |||||||| || | || || || || ||| | |||| | Sbjct 105000 CGTCGATCTCGTCGATGAACACCAGGCACGGCGCGTTGTCCTTGGCCTTGTTGAAGAGGT 104941 Query 14304 CTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATTGGCGGCGGAACATT 14363 | ||||| | | || || || ||||| |||||||| | || | | |||| || Sbjct 104940 CCCGCACCCGCGACGCGCCCACGCCCACGAACATCTCGATGAACTCCGACCCGGA-CAGC 104882 Query 14364 G-GATGAAGGGGACGTTAGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTC 14422 | || |||||| ||| | || |||||||| || ||| || || ||||||||||| Sbjct 104881 GAGAAGAAGGGCACGGCGGCCTCGCCCGCGATCGCCTTGGCCAGCAGCGTCTTCCCCGTT 104822 Query 14423 CCTGGTTTCCCTGCGAGAAGGGCACCACGT--GGGATCC-TGGCACCACTGCC--AAAGT 14477 || || || | || | ||||| | | ||||||| || | |||| ||| || | Sbjct 104821 CCCGGCGGGCCGACCAG--GAGCACCCCCTTGGGGATCCTTGCCCCCACCGCCGTGAACT 104764 Query 14478 AGCGTTCAGGTTGTTTAAGGAAGTCCACGATTTCTTCCAATTCATCCTTCGCGGCGTCGA 14537 | ||||| || ||||| | |||||| || | || || | |||||| |||| | Sbjct 104763 TG---TCAGGGAACTTGAGGAACTGCACGATCTCCTGGAAGTCCTGCTTCGCCTCGTCCA 104707 Query 14538 TGCC 14541 ||| Sbjct 104706 CGCC 104703 >seq55079 Length=1765451 Score = 111 bits (122), Expect = 2e-19 Identities = 236/351 (67%), Gaps = 6/351 (2%) Strand=Plus/Minus Query 11856 GAGGAGACGCCCTTCTATCCACGATCCGTCTATGGCGTCTCAAAGGTTGCGGCACATTGG 11915 |||| ||||||||| | || || ||| ||| | || | | ||||| || || || ||| Sbjct 1458255 GAGGCCACGCCCTTCCACCCGCGCTCCCCCTACGCCGCCGCCAAGGTCGCCGCGCACTGG 1458196 Query 11916 CTCGTGAAGAATTACCGAGAATCCTATGGTCTCTTTGCGTGCTCTGGTATTCTCTTCAAC 11975 | || ||||| || | || || ||||| || ||| || | ||||||||| Sbjct 1458195 TACACCGTCAACTACCGCGAGGCGTACGGCCTCTTCGCCTGCAACGGCGTGCTCTTCAAC 1458136 Query 11976 CACGAGTCACCCCGTCGTGGCCCGGATTTCGTGACAAAGAAGATCACCGATGGTATCAAA 12035 |||||||| ||||| || ||| | | ||||| || ||||||||| | ||| Sbjct 1458135 CACGAGTCCCCCCGGCGCGGCGAGAACTTCGTCACCCGCAAGATCACCCGCGCCATCGGC 1458076 Query 12036 CAAATCGTGGCGGGTG---AGAGGGAGTTCATTGAATTGGGGAACCTCAACGCCGAGAGG 12092 | ||| || ||| ||| || || | | || |||||| ||||| ||| Sbjct 1458075 CGCATCAAGGTGGGGCTCCAGACCAAGGTCTTCC---TCGGCAACCTCTCCGCCGCCAGG 1458019 Query 12093 GACTGGGGACATGCCAAGGACTATGTTGAAGCCATGTGGCTCGTACTTCAACAAGAAGAG 12152 |||||||| ||| |||||| || || |||||||||||| | || || || || || Sbjct 1458018 GACTGGGGCTTCGCCGGGGACTACGTGGAGGCCATGTGGCTCATGCTCCAGCAGGACAAG 1457959 Query 12153 GCGGACGAATATGTCGTCGCGACGGGGGAGACACACTCCGTCAGGGAGTTC 12203 | ||||| ||||||||||| || | |||| ||| |||| ||||||| Sbjct 1457958 CCTGACGACTATGTCGTCGCCACCGAGGAGTGCCACACCGTGGAGGAGTTC 1457908 >seq16381 Length=215813 Score = 93.3 bits (102), Expect = 5e-14 Identities = 278/421 (66%), Gaps = 10/421 (2%) Strand=Plus/Plus Query 14051 ACGGTGATCTTACGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATG 14110 ||||||| || ||||| || || ||||| || || || || ||| || | ||| Sbjct 82214 ACGGTGACCTGCCGATCGAACCGCCCTGGCCGCAGAAGCGCCGAGTCGAGCACATCCGGC 82273 Query 14111 CGGTTCGTCGCCGCGATGACAACGATGCCC--GTCTCGTTATCAAAGCCATCCATCTCAG 14168 | ||| ||||| |||| || | || || || || | ||||| |||||||| | Sbjct 82274 CTGTTGGTCGCGGCGAGCACGATGACACCGCTGTTTCCGGAG--AAGCCGTCCATCTCCG 82331 Query 14169 TCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCAGGCATACCA--CCCGCACT 14226 | | || || || ||||| || || | || || ||| | || ||| || |||| Sbjct 82332 TGAGCAGCTGGTTAATGGTCTGCTCCCTCTCGTCGTTCCCCC-CAC-CCATTCCGGCACC 82389 Query 14227 GCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATACATGGTTGATTTTCACG 14286 || ||| | |||||||||||||| ||||||||||| ||||| || || || | Sbjct 82390 ACGCTGCCTCCCGACGGCGTCAATCTCATCGATGAAGACGATGCAGGGCGCCTTGGCCTT 82449 Query 14287 GGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAA 14346 ||| || |||| || | ||| || || || ||||| || || | ||| || || Sbjct 82450 GGCCTTCTCGAAGAGGTCCCTCACCCTGGACGCGCCCACACCGACGAAGAGCTCGACGAA 82509 Query 14347 ATTGGCGGCGGAACATTGGATGAAGGGGACGTTAGATTCACCCGCGATGGCTCGGGCGAG 14406 | | |||| || || |||||| || | || || |||| ||| |||||||| Sbjct 82510 CTCAGACGCGGCGCAGGAGAAGAAGGGCACCCCGGCCTCCCCGGCGACGGCCCGGGCGAG 82569 Query 14407 GAGGGTCTTCCCCGTCCCTGGTTTCCCTGCGAGAAGGGCACCACGT-GGGATCCTGGCAC 14465 || |||||||| ||||| || || |||| | |||| | | | |||||| |||| | Sbjct 82570 CAGCGTCTTCCCGGTCCCGGGCGGGCCGACGAGCA-GGCAGCCCTTGGGGATCTTGGCCC 82628 Query 14466 C 14466 | Sbjct 82629 C 82629 >seq59844 Length=164292 Score = 84.2 bits (92), Expect = 3e-11 Identities = 164/239 (69%), Gaps = 10/239 (4%) Strand=Plus/Minus Query 14113 GTTCGTCGCCGCGATGACAACGATGCCCGTCTCGTTATCAAAGCCATCCATCTCAGTCAA 14172 ||| || || || | |||| |||||| || | ||||| |||||||||||||||| Sbjct 23297 GTTGGTGGCAGCAACAACAATGATGCCAGTGTTTCCCTCAAAACCATCCATCTCAGTCAG 23238 Query 14173 GAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCAGGCATACC---ACCCGCACTGCG 14229 || ||||||| || || || | |||||| ||| || ||| ||| | | | Sbjct 23237 TAGCTGATTGAGAGTCTGCTCCCTTTCATCGTTCCCA---CCACCGATACCTGTTCCTCT 23181 Query 14230 TTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATACATGGTTGATTTTCACGGGC 14289 |||| | || || || ||||||||||| | || || || || || ||| || ||| Sbjct 23180 TTGCCTCCCAACAGCATCAATTTCATCAACAAACACTATGCAAGGAGCATTCTCCTTGGC 23121 Query 14290 AACTTC--AAAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAA 14346 |||| |||| ||| || || | |||||| ||||| |||||||||||||| || Sbjct 23120 --CTTCTTGAAGAGATCACGAACACGGGAGGCACCAACACCAACAAACATCTCCACGAA 23064 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 617905371103280