Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aegilops_20tauschii_20subsp._20tauschii_20[refseq_20GCF_5F001957025. 1_202017-01-19] 68,538 sequences; 4,327,321,625 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq17655 141 1e-28 seq59844 102 9e-17 seq16381 96.9 4e-15 >seq17655 Length=1090806 Score = 141 bits (156), Expect = 1e-28 Identities = 120/148 (81%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 94797 CTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTT 94856 ||| || ||||| || |||| || || || || ||||| ||||||||||| || ||||| Sbjct 172393 CTTCGCCGAGCGCATCGTCGCCTTCGCCTGCGTCGAGGGCATCTTCTTCTCCGGCTCCTT 172452 Query 94857 CTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGA 94916 |||||| || | |||||||||||||| || |||||||| || ||| |||||||||||| Sbjct 172453 CTGCGCCATCTTCTGGCTCAAGAAGCGCGGGCTCATGCCGGGCCTCACCTTCTCCAACGA 172512 Query 94917 GCTTATCTCTCGTGACGAGGGACTCCAC 94944 ||| ||||| || |||||||| || ||| Sbjct 172513 GCTCATCTCCCGCGACGAGGGCCTGCAC 172540 >seq59844 Length=164292 Score = 102 bits (112), Expect = 9e-17 Identities = 201/291 (69%), Gaps = 20/291 (7%) Strand=Plus/Minus Query 9527 TCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCGGCG 9586 |||||||| || || | ||| | ||| ||| | || ||| | | || || || || Sbjct 23344 TCAAAGCGTCCAGGTCTAAGTAAAGCGGAATCCAAAATGTCAGCCCTGTTGGTGGCAGCA 23285 Query 9587 ATGACAACAATACC--TGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTAA 9644 | |||| || || |||||| | |||||||||||||||| |||| || || || | Sbjct 23284 ACAACAATGATGCCAGTGTTTCCCT--CAAAACCATCCATCTCAGTCAGTAGCTGATTGA 23227 Query 9645 TAGTTTGTTCCCGTTCATCATTCGCTGGCATACCACC-AGCACTG-----CGTTGCTTTC 9698 ||| || |||| |||||| ||| | |||||| | ||| | |||| | | Sbjct 23226 GAGTCTGCTCCCTTTCATCGTTCCC------ACCACCGATACCTGTTCCTCTTTGCCTCC 23173 Query 9699 CCACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTC-- 9756 | || |||||||| ||||||| || || ||||| || ||| || | | | |||| Sbjct 23172 CAACAGCATCAATTTCATCAACAAACACTATGCAAGGAGCATTCTC-CTTG-GCCTTCTT 23115 Query 9757 AAAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAA 9807 |||||||| || ||||| ||| || |||||||||||||||||||| || Sbjct 23114 GAAGAGATCACGAACACGGGAGGCACCAACACCAACAAACATCTCCACGAA 23064 >seq16381 Length=215813 Score = 96.9 bits (106), Expect = 4e-15 Identities = 277/415 (67%), Gaps = 22/415 (5%) Strand=Plus/Plus Query 9524 CGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCG 9583 ||||| || || ||||| || || ||||| || || | ||| | || |||||| Sbjct 82226 CGATCGAACCGCCCTGGCCGCAGAAGCGCCGAGTCGAGCACATCCGGCCTGTTGGTCGCG 82285 Query 9584 GCGATGACAACAATACC--TGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGT 9641 |||| || | | ||| |||||| | || || |||||||| || | || |||| Sbjct 82286 GCGAGCACGATGACACCGCTGTTTCCGGAG--AAGCCGTCCATCTCCGTGAGCAGCTGGT 82343 Query 9642 TAATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCA--CCAGCACTGCGTTGCTTTCC 9699 |||| || || |||| || || ||| | || ||| || |||| || ||| | || Sbjct 82344 TAATGGTCTGCTCCCTCTCGTCGTTCCCCC-CAC-CCATTCCGGCACCACGCTGCCTCCC 82401 Query 9700 CACGGCATCAATCTCATCAATGAAGACGATGCATGG----TTGATTTTCGCGAGCGACTT 9755 ||||| ||||||||||| |||||||||||||| || ||| || || | | Sbjct 82402 GACGGCGTCAATCTCATCGATGAAGACGATGCAGGGCGCCTTGGCCTTGGCCTTC----T 82457 Query 9756 CAAAGAGATCCCGTACACGCTTG--GCGCCCACACCAACAAACATCTCCACAAAGTTTGC 9813 | ||||| |||| ||| || | ||||||||||| || || | ||| || || | | Sbjct 82458 CGAAGAGGTCCC--TCACCCTGGACGCGCCCACACCGACGAAGAGCTCGACGAACTCAGA 82515 Query 9814 GGCGGAACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGT 9873 |||| || || |||||| || | || || || | ||| |||||||| || || Sbjct 82516 CGCGGCGCAGGAGAAGAAGGGCACCCCGGCCTCCCCGGCGACGGCCCGGGCGAGCAGCGT 82575 Query 9874 CTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGT-GGAATCTTGGCGCC 9927 ||| || || || ||| || |||| | |||| | | | || |||||||| || Sbjct 82576 CTTCCCGGTCCCGGGCGGGCCGACGAGCA-GGCAGCCCTTGGGGATCTTGGCCCC 82629 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 582761105891120