Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aegilops_20tauschii_20subsp._20tauschii_20[refseq_20GCF_5F001957025. 1_202017-01-19] 68,538 sequences; 4,327,321,625 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq17655 219 5e-52 >seq17655 Length=1090806 Score = 219 bits (242), Expect = 5e-52 Identities = 588/875 (67%), Gaps = 33/875 (4%) Strand=Plus/Plus Query 59562 TTTCCTATACGGTACCCGGATCTGTGGGCCCTGTATAAGAAAGCGATCGGTTCATTCTGG 59621 || || || |||| |||| | | |||| | || ||||| ||| | | || |||||| Sbjct 171980 TTCCCCATCCGGTTCCCGCAGATCTGGGAGTTCTACAAGAAGGCGGTGGCGTCCTTCTGG 172039 Query 59622 TCCGTCGAGGAGATTGACCTCGCCGGAGACCTGAAGGATTGGGACAAG---CTCAATTAC 59678 ||| ||||||| | |||||| || ||| | | ||||||| ||| || Sbjct 172040 ACCGCCGAGGAGGTGGACCTCTCCTCCGACGCGCGCCACTGGGACACCACCCTCTCCAAC 172099 Query 59679 GACGAGCAGCATTTCATCAAGATGGTCCTGGCCTTCTTCGCGGCGAGTGATGGAATTGTG 59738 ||||||| || |||||| || || ||||||||||| || || || || ||| Sbjct 172100 GACGAGCGCCACTTCATCTCCCACGTGCTCGCCTTCTTCGCCGCCTCCGACGGCATCGTG 172159 Query 59739 ATGGAAAATATAGAC---ATGAACTTTTCCAAGGATGTCCAGATTGCCGAGGCCCGGTCG 59795 |||| || | | | | | | | ||| || || ||| | ||||||||| || | Sbjct 172160 CTGGAGAACCTCGCCTCCAGGTTCATGTCC---GACGTGCAGGTCGCCGAGGCCAGGGCC 172216 Query 59796 TTCTACGCGTATCAG-TCGTTCAACGAGTCTATCCACTCCGAGACGTACTCGCTCATGAT 59854 ||||||| | ||| ||| || |||| ||||||||||||| |||||| || | || Sbjct 172217 TTCTACGGCTTCCAGATCGC-CATCGAGAACATCCACTCCGAGATGTACTCCCTGCTCAT 172275 Query 59855 CGATAAGTTGGTCAAGGATCCGGAAGAGAAGGCTGGTCTGTTCCGTGCCATAGAGACGTC 59914 ||| | | || || | ||||||| | || ||||| ||||| || || Sbjct 172276 CGAGACCTACATCCGCGACGACGTCGAGAAGGACCGCCTCTTCCGCGCCATCGACACCAT 172335 Query 59915 CCCCGCAGTTAAACAAAAAGCAGAATGGGCCATGCAGTGGAT-GA-GTCCTGGAGCATCA 59972 |||||| || | || || || |||||| | | ||||| || | | ||||| Sbjct 172336 CCCCGCCGTGCGCCGCAAGGCCGACTGGGCCCTCCGCTGGATCGACGGCGGGGAGCGC-- 172393 Query 59973 TTTGCACAACGTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTC 60032 || || | || || | || || || ||||| || || ||||||||||| ||||| ||| Sbjct 172394 TTCGCCGAGCGCATCGTCGCCTTCGCCTGCGTCGAGGGCATCTTCTTCTCCGGCTCCTTC 172453 Query 60033 TGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAG 60092 || || || ||||||||||| ||||| || |||||||||||||| | |||||||||||| Sbjct 172454 TGCGCCATCTTCTGGCTCAAGAAGCGCGGGCTCATGCCGGGCCTCACCTTCTCCAACGAG 172513 Query 60093 CTGATTTCCCGGGACGAGGGCCTCCATCAGGAGTTTGCAGTGAC-GCTCTATTCACA-CC 60150 || || ||||| ||||||||||| || || || || || | ||||| ||| || Sbjct 172514 CTCATCTCCCGCGACGAGGGCCTGCACTGCGACTTCGC-CTGCCTCCTCTA-CGACATCC 172571 Query 60151 T-ATTGGAAAAATG--CCCTTCCAAGGATATTCACAAGATTGT-TCAGTGGGCTTGTGAA 60206 | || || || | ||| | | || | |||| || || | || | || || Sbjct 172572 TGCGCGGCAAGCTGGACGAGTCC-CGCGTCTT--CGAGATCGTCTCCGAGGCCGTG-GAC 172627 Query 60207 GTGGAGAGCGAGTTCATCACAGAAGCGCTTCCATGCAAACTCATAGGTATGGACGCTGGA 60266 | ||||| |||||| || || ||||| || ||| ||| | || ||| ||| | Sbjct 172628 ATCGAGAGGGAGTTCGTCTGCGACGCGCTGCCCTGCGCGCTCGTCGGCATGAACGGCGAC 172687 Query 60267 GAAATGACGCAGTACATTCAGTTTGTCGCGGACCGC---CTCATGGCCCAGTTTGGAGAA 60323 |||| |||||||| |||| || || |||||| |||||||| | | | || Sbjct 172688 CTCATGAGCCAGTACATCGAGTTCGTGGCCGACCGCCTGCTCATGGCGCTGGGCTG-CAA 172746 Query 60324 GGACCAATTTACGGCGTGAATAACCCTTTCGACTGGATGGAGACCATCTCGTTGGAAGGG 60383 | | | | ||| || | ||||| ||||||||||||||| ||||||| || | || Sbjct 172747 GAAGC--TGTACAACGCCACCAACCCGTTCGACTGGATGGAGCTCATCTCGCTGCAGGGC 172804 Query 60384 AAGACCAACTTCTTTGAGAAGCGGGTCGGGGATTA 60418 |||||||||||||| |||||||| ||||| || || Sbjct 172805 AAGACCAACTTCTTCGAGAAGCGCGTCGGCGAGTA 172839 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548054865090720