Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Aegilops_20tauschii_20subsp._20tauschii_20[refseq_20GCF_5F001957025.
1_202017-01-19] 68,538 sequences; 4,327,321,625 total letters
Query= NC_028110.1
Length=171045
Score E
Sequences producing significant alignments: (Bits) Value
seq17655 170 2e-37
seq63008 93.3 5e-14
seq67585 87.8 2e-12
seq39079 87.8 2e-12
seq68341 86.0 7e-12
seq66491 86.0 7e-12
seq62712 86.0 7e-12
seq59769 86.0 7e-12
seq55895 86.0 7e-12
seq38817 86.0 7e-12
seq35597 86.0 7e-12
seq15825 86.0 7e-12
seq4899 86.0 7e-12
seq36031 82.4 8e-11
>seq17655
Length=1090806
Score = 170 bits (188), Expect = 2e-37
Identities = 499/753 (66%), Gaps = 22/753 (3%)
Strand=Plus/Minus
Query 74463 TAATCACCGACCCGCTTTTCAAAAAAGTTGGTCTTCCCTTCCAACGAGATGTTCTCCATC 74522
|| || ||||| ||||| || || ||||||||||| || | || ||||||| |||||||
Sbjct 172839 TACTCGCCGACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGCAGCGAGATGAGCTCCATC 172780
Query 74523 CAGTCGAAAGGGTTCTTTGCACCGTAAATAGGCTTCTCCCCAAACTGTGCCATGAG---G 74579
|||||||| ||||| | || ||| | |||||| | | | |||||||| |
Sbjct 172779 CAGTCGAACGGGTTGGTGGCGTTGTACA---GCTTCTTGCAGCCCAGCGCCATGAGCAGG 172723
Query 74580 CGATCCGCCACAAATTGAATGTACTGCGTCATTTCTCCCGCATCCATGCCGATGAGTTTG 74639
|| || ||||| || | |||||||| |||| | | | |||||||| ||| |
Sbjct 172722 CGGTCGGCCACGAACTCGATGTACTGGCTCATGAGGTCGCCGTTCATGCCGACGAGCGCG 172663
Query 74640 CACGGCAGTGCCTCGGTGATAAACTCACTCTCCACCTCGCAAGCCCATTG-GACAATCTT 74698
|| ||||| || ||| || ||||| ||||| | || || | || | ||| ||||
Sbjct 172662 CAGGGCAGCGCGTCGCAGACGAACTCCCTCTCGATGTC-CACGGCCTCGGAGACGATCTC 172604
Query 74699 GTGAATGTCTTTGGAAGGG--CACTTTTCC-CTCAGGTGAGAGTAAAGC-GTCACGGCAA 74754
| | | | ||| | || || || | |||| ||| || | || ||| |
Sbjct 172603 G---AAGACGCGGGACTCGTCCAGCTTGCCGCGCAGGATGTCGTAGAGGAGGCA-GGCGA 172548
Query 74755 ACTCCTGATGCGAGCCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCA 74814
| || ||| ||| || || | | || | || || || || | ||||| ||||
Sbjct 172547 AGTCGCAGTGCAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCCGGCA 172488
Query 74815 TAAGTCCACGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTT 74874
| || || |||||||| | ||| |||||||| |||||||| || |||||||||||| |
Sbjct 172487 TGAGCCCGCGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCGGAGAAGAAGATGCCCT 172428
Query 74875 CGACACACGCAAAGGCGACAAGGCGTTGCGCGAA-CGGTGCATCGGAAGTC-ATCCAAGT 74932
|||| || || |||||||| | ||| | ||||| || | | | | ||| |||||
Sbjct 172427 CGACGCAGGCGAAGGCGACGATGCGCTCGGCGAAGCGCTCC--CCGCCGTCGATCCAGCG 172370
Query 74933 CTGAGCCCATTCAGCTTTTCGTTTGACCGCAGGGACAGTATCGATCGCTTGGAAGAGGCT 74992
| ||||| || || || || || || |||| || ||||| || |||||||||
Sbjct 172369 GAGGGCCCAGTCGGCCTTGCGGCGCACGGCGGGGATGGTGTCGATGGCGCGGAAGAGGCG 172310
Query 74993 TGCCTTCTCTTCGGGATCCTTGACGAGCTTGTCAATCATAAGTGAGTACGTCTCCGAATG 75052
||||||| || || || | | || || | || |||||| |||| || ||
Sbjct 172309 GTCCTTCTCGACGTCGTCGCGGATGTAGGTCTCGATGAGCAGGGAGTACATCTCGGAGTG 172250
Query 75053 AATCGACTCGTTGAACGA-CTGGTACGCGTAGAAAGACCGCGCCTCTGCAATCTGTACAT 75111
|| |||| || ||| |||| | ||||||| | || ||||| || | ||| || |
Sbjct 172249 GATGTTCTCGATG-GCGATCTGGAAGCCGTAGAAGGCCCTGGCCTCGGCGACCTGCACGT 172191
Query 75112 CCTTTGAAAAATTCATGTCGATATTCTCCATGACGATGCCGTCCGAGGCGGCGAAAAAAG 75171
| || | | ||| ||||||| ||||||||||| ||||||||||| || |
Sbjct 172190 CGGACATGAACCTGGAGGCGAGGTTCTCCAGCACGATGCCGTCGGAGGCGGCGAAGAAGG 172131
Query 75172 CCAGTACCATTTTGATAAAGTGGCGCTCATCGT 75204
| || || ||| ||||||||||| ||||
Sbjct 172130 CGAGCACGTGGGAGATGAAGTGGCGCTCGTCGT 172098
>seq63008
Length=32755
Score = 93.3 bits (102), Expect = 5e-14
Identities = 70/81 (86%), Gaps = 1/81 (1%)
Strand=Plus/Minus
Query 79620 CAGACTGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-A 79678
|||| ||||||| |||| |||| |||| ||||||||||||||||||||||||||| |
Sbjct 27993 CAGAATGCTTTCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAA 27934
Query 79679 CCAATTGAGCTACGAAAGCAA 79699
|||| ||||||| ||||||||
Sbjct 27933 CCAACTGAGCTATGAAAGCAA 27913
Score = 89.7 bits (98), Expect = 6e-13
Identities = 66/76 (87%), Gaps = 1/76 (1%)
Strand=Plus/Minus
Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683
||||||| |||| |||| |||| ||||||||||||||||||||||||||| |||||
Sbjct 24758 TGCTTTCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 24699
Query 79684 TGAGCTACGAAAGCAA 79699
||||||| ||||||||
Sbjct 24698 TGAGCTATGAAAGCAA 24683
>seq67585
Length=718402
Score = 87.8 bits (96), Expect = 2e-12
Identities = 65/75 (87%), Gaps = 1/75 (1%)
Strand=Plus/Plus
Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683
||||||| |||| |||| |||| ||||||||||||||||||||||||||| |||||
Sbjct 215533 TGCTTTCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 215592
Query 79684 TGAGCTACGAAAGCA 79698
||||||| |||||||
Sbjct 215593 TGAGCTATGAAAGCA 215607
Score = 86.0 bits (94), Expect = 7e-12
Identities = 64/74 (86%), Gaps = 1/74 (1%)
Strand=Plus/Plus
Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683
||||||| |||| |||| |||| ||||||||||||||||||||||||||| |||||
Sbjct 216154 TGCTTTCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 216213
Query 79684 TGAGCTACGAAAGC 79697
||||||| ||||||
Sbjct 216214 TGAGCTATGAAAGC 216227
Score = 86.0 bits (94), Expect = 7e-12
Identities = 64/74 (86%), Gaps = 1/74 (1%)
Strand=Plus/Plus
Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683
||||||| |||| |||| |||| ||||||||||||||||||||||||||| |||||
Sbjct 218166 TGCTTTCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 218225
Query 79684 TGAGCTACGAAAGC 79697
||||||| ||||||
Sbjct 218226 TGAGCTATGAAAGC 218239
>seq39079
Length=861723
Score = 87.8 bits (96), Expect = 2e-12
Identities = 67/78 (86%), Gaps = 1/78 (1%)
Strand=Plus/Plus
Query 79622 GACTGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACC 79680
|| ||||||| |||| |||| |||| ||||||||||||||||||||||||||| |||
Sbjct 645369 GAGTGCTTTCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACC 645428
Query 79681 AATTGAGCTACGAAAGCA 79698
|| ||||||| |||||||
Sbjct 645429 AACTGAGCTATGAAAGCA 645446
>seq68341
Length=64295
Score = 86.0 bits (94), Expect = 7e-12
Identities = 64/74 (86%), Gaps = 1/74 (1%)
Strand=Plus/Plus
Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683
||||||| |||| |||| |||| ||||||||||||||||||||||||||| |||||
Sbjct 19366 TGCTTTCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 19425
Query 79684 TGAGCTACGAAAGC 79697
||||||| ||||||
Sbjct 19426 TGAGCTATGAAAGC 19439
Score = 86.0 bits (94), Expect = 7e-12
Identities = 64/74 (86%), Gaps = 1/74 (1%)
Strand=Plus/Plus
Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683
||||||| |||| |||| |||| ||||||||||||||||||||||||||| |||||
Sbjct 34689 TGCTTTCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 34748
Query 79684 TGAGCTACGAAAGC 79697
||||||| ||||||
Sbjct 34749 TGAGCTATGAAAGC 34762
>seq66491
Length=923498
Score = 86.0 bits (94), Expect = 7e-12
Identities = 64/74 (86%), Gaps = 1/74 (1%)
Strand=Plus/Minus
Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683
||||||| |||| |||| |||| ||||||||||||||||||||||||||| |||||
Sbjct 432025 TGCTTTCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 431966
Query 79684 TGAGCTACGAAAGC 79697
||||||| ||||||
Sbjct 431965 TGAGCTATGAAAGC 431952
>seq62712
Length=50269
Score = 86.0 bits (94), Expect = 7e-12
Identities = 64/74 (86%), Gaps = 1/74 (1%)
Strand=Plus/Minus
Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683
||||||| |||| |||| |||| ||||||||||||||||||||||||||| |||||
Sbjct 6315 TGCTTTCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 6256
Query 79684 TGAGCTACGAAAGC 79697
||||||| ||||||
Sbjct 6255 TGAGCTATGAAAGC 6242
>seq59769
Length=589374
Score = 86.0 bits (94), Expect = 7e-12
Identities = 64/74 (86%), Gaps = 1/74 (1%)
Strand=Plus/Plus
Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683
||||||| |||| |||| |||| ||||||||||||||||||||||||||| |||||
Sbjct 427450 TGCTTTCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 427509
Query 79684 TGAGCTACGAAAGC 79697
||||||| ||||||
Sbjct 427510 TGAGCTATGAAAGC 427523
>seq55895
Length=72245
Score = 86.0 bits (94), Expect = 7e-12
Identities = 64/74 (86%), Gaps = 1/74 (1%)
Strand=Plus/Minus
Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683
||||||| |||| |||| |||| ||||||||||||||||||||||||||| |||||
Sbjct 24716 TGCTTTCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 24657
Query 79684 TGAGCTACGAAAGC 79697
||||||| ||||||
Sbjct 24656 TGAGCTATGAAAGC 24643
>seq38817
Length=2399901
Score = 86.0 bits (94), Expect = 7e-12
Identities = 66/77 (86%), Gaps = 1/77 (1%)
Strand=Plus/Minus
Query 79622 GACTGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACC 79680
|| ||||||| |||| |||| |||| ||||||||||||||||||||||||||| |||
Sbjct 2205510 GAATGCTTTCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACC 2205451
Query 79681 AATTGAGCTACGAAAGC 79697
|| ||||||| ||||||
Sbjct 2205450 AACTGAGCTATGAAAGC 2205434
Score = 86.0 bits (94), Expect = 7e-12
Identities = 66/77 (86%), Gaps = 1/77 (1%)
Strand=Plus/Minus
Query 79622 GACTGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACC 79680
|| ||||||| |||| |||| |||| ||||||||||||||||||||||||||| |||
Sbjct 2205881 GAATGCTTTCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACC 2205822
Query 79681 AATTGAGCTACGAAAGC 79697
|| ||||||| ||||||
Sbjct 2205821 AACTGAGCTATGAAAGC 2205805
>seq35597
Length=402774
Score = 86.0 bits (94), Expect = 7e-12
Identities = 64/74 (86%), Gaps = 1/74 (1%)
Strand=Plus/Minus
Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683
||||||| |||| |||| |||| ||||||||||||||||||||||||||| |||||
Sbjct 302816 TGCTTTCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 302757
Query 79684 TGAGCTACGAAAGC 79697
||||||| ||||||
Sbjct 302756 TGAGCTATGAAAGC 302743
>seq15825
Length=579305
Score = 86.0 bits (94), Expect = 7e-12
Identities = 64/74 (86%), Gaps = 1/74 (1%)
Strand=Plus/Minus
Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683
||||||| |||| |||| |||| ||||||||||||||||||||||||||| |||||
Sbjct 543919 TGCTTTCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 543860
Query 79684 TGAGCTACGAAAGC 79697
||||||| ||||||
Sbjct 543859 TGAGCTATGAAAGC 543846
>seq4899
Length=14418
Score = 86.0 bits (94), Expect = 7e-12
Identities = 64/74 (86%), Gaps = 1/74 (1%)
Strand=Plus/Plus
Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683
||||||| |||| |||| |||| ||||||||||||||||||||||||||| |||||
Sbjct 2313 TGCTTTCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 2372
Query 79684 TGAGCTACGAAAGC 79697
||||||| ||||||
Sbjct 2373 TGAGCTATGAAAGC 2386
>seq36031
Length=340655
Score = 82.4 bits (90), Expect = 8e-11
Identities = 85/109 (78%), Gaps = 2/109 (2%)
Strand=Plus/Minus
Query 119077 GAACACGTTGGCTAGCTTGGCACCGTATCCGTTCCGACCACCGGTCA-CGCGCTGCTCCT 119135
||| | |||||| |||||||| ||||| ||||||| || ||||| | || |||| |
Sbjct 261598 GAAGATGTTGGCGAGCTTGGCGCCGTAGCCGTTCCTCCCGCCGGTGGTCTTGC-GCTCGT 261540
Query 119136 CGTCGTTGTAGTTGGAGCTGGTCAAAAGGTGCCCAAAGATGAGCTCGGG 119184
||||| ||||||| |||||| | ||||| || ||||||||||||||
Sbjct 261539 TGTCGTCGTAGTTGCTGCTGGTGAGGAGGTGGCCGAAGATGAGCTCGGG 261491
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 546747186372400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |