Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aegilops_20tauschii_20subsp._20tauschii_20[refseq_20GCF_5F001957025. 1_202017-01-19] 68,538 sequences; 4,327,321,625 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq17655 170 2e-37 seq63008 93.3 5e-14 seq67585 87.8 2e-12 seq39079 87.8 2e-12 seq68341 86.0 7e-12 seq66491 86.0 7e-12 seq62712 86.0 7e-12 seq59769 86.0 7e-12 seq55895 86.0 7e-12 seq38817 86.0 7e-12 seq35597 86.0 7e-12 seq15825 86.0 7e-12 seq4899 86.0 7e-12 seq36031 82.4 8e-11 >seq17655 Length=1090806 Score = 170 bits (188), Expect = 2e-37 Identities = 499/753 (66%), Gaps = 22/753 (3%) Strand=Plus/Minus Query 74463 TAATCACCGACCCGCTTTTCAAAAAAGTTGGTCTTCCCTTCCAACGAGATGTTCTCCATC 74522 || || ||||| ||||| || || ||||||||||| || | || ||||||| ||||||| Sbjct 172839 TACTCGCCGACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGCAGCGAGATGAGCTCCATC 172780 Query 74523 CAGTCGAAAGGGTTCTTTGCACCGTAAATAGGCTTCTCCCCAAACTGTGCCATGAG---G 74579 |||||||| ||||| | || ||| | |||||| | | | |||||||| | Sbjct 172779 CAGTCGAACGGGTTGGTGGCGTTGTACA---GCTTCTTGCAGCCCAGCGCCATGAGCAGG 172723 Query 74580 CGATCCGCCACAAATTGAATGTACTGCGTCATTTCTCCCGCATCCATGCCGATGAGTTTG 74639 || || ||||| || | |||||||| |||| | | | |||||||| ||| | Sbjct 172722 CGGTCGGCCACGAACTCGATGTACTGGCTCATGAGGTCGCCGTTCATGCCGACGAGCGCG 172663 Query 74640 CACGGCAGTGCCTCGGTGATAAACTCACTCTCCACCTCGCAAGCCCATTG-GACAATCTT 74698 || ||||| || ||| || ||||| ||||| | || || | || | ||| |||| Sbjct 172662 CAGGGCAGCGCGTCGCAGACGAACTCCCTCTCGATGTC-CACGGCCTCGGAGACGATCTC 172604 Query 74699 GTGAATGTCTTTGGAAGGG--CACTTTTCC-CTCAGGTGAGAGTAAAGC-GTCACGGCAA 74754 | | | | ||| | || || || | |||| ||| || | || ||| | Sbjct 172603 G---AAGACGCGGGACTCGTCCAGCTTGCCGCGCAGGATGTCGTAGAGGAGGCA-GGCGA 172548 Query 74755 ACTCCTGATGCGAGCCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCA 74814 | || ||| ||| || || | | || | || || || || | ||||| |||| Sbjct 172547 AGTCGCAGTGCAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCCGGCA 172488 Query 74815 TAAGTCCACGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTT 74874 | || || |||||||| | ||| |||||||| |||||||| || |||||||||||| | Sbjct 172487 TGAGCCCGCGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCGGAGAAGAAGATGCCCT 172428 Query 74875 CGACACACGCAAAGGCGACAAGGCGTTGCGCGAA-CGGTGCATCGGAAGTC-ATCCAAGT 74932 |||| || || |||||||| | ||| | ||||| || | | | | ||| ||||| Sbjct 172427 CGACGCAGGCGAAGGCGACGATGCGCTCGGCGAAGCGCTCC--CCGCCGTCGATCCAGCG 172370 Query 74933 CTGAGCCCATTCAGCTTTTCGTTTGACCGCAGGGACAGTATCGATCGCTTGGAAGAGGCT 74992 | ||||| || || || || || || |||| || ||||| || ||||||||| Sbjct 172369 GAGGGCCCAGTCGGCCTTGCGGCGCACGGCGGGGATGGTGTCGATGGCGCGGAAGAGGCG 172310 Query 74993 TGCCTTCTCTTCGGGATCCTTGACGAGCTTGTCAATCATAAGTGAGTACGTCTCCGAATG 75052 ||||||| || || || | | || || | || |||||| |||| || || Sbjct 172309 GTCCTTCTCGACGTCGTCGCGGATGTAGGTCTCGATGAGCAGGGAGTACATCTCGGAGTG 172250 Query 75053 AATCGACTCGTTGAACGA-CTGGTACGCGTAGAAAGACCGCGCCTCTGCAATCTGTACAT 75111 || |||| || ||| |||| | ||||||| | || ||||| || | ||| || | Sbjct 172249 GATGTTCTCGATG-GCGATCTGGAAGCCGTAGAAGGCCCTGGCCTCGGCGACCTGCACGT 172191 Query 75112 CCTTTGAAAAATTCATGTCGATATTCTCCATGACGATGCCGTCCGAGGCGGCGAAAAAAG 75171 | || | | ||| ||||||| ||||||||||| ||||||||||| || | Sbjct 172190 CGGACATGAACCTGGAGGCGAGGTTCTCCAGCACGATGCCGTCGGAGGCGGCGAAGAAGG 172131 Query 75172 CCAGTACCATTTTGATAAAGTGGCGCTCATCGT 75204 | || || ||| ||||||||||| |||| Sbjct 172130 CGAGCACGTGGGAGATGAAGTGGCGCTCGTCGT 172098 >seq63008 Length=32755 Score = 93.3 bits (102), Expect = 5e-14 Identities = 70/81 (86%), Gaps = 1/81 (1%) Strand=Plus/Minus Query 79620 CAGACTGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-A 79678 |||| ||||||| |||| |||| |||| ||||||||||||||||||||||||||| | Sbjct 27993 CAGAATGCTTTCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAA 27934 Query 79679 CCAATTGAGCTACGAAAGCAA 79699 |||| ||||||| |||||||| Sbjct 27933 CCAACTGAGCTATGAAAGCAA 27913 Score = 89.7 bits (98), Expect = 6e-13 Identities = 66/76 (87%), Gaps = 1/76 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 24758 TGCTTTCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 24699 Query 79684 TGAGCTACGAAAGCAA 79699 ||||||| |||||||| Sbjct 24698 TGAGCTATGAAAGCAA 24683 >seq67585 Length=718402 Score = 87.8 bits (96), Expect = 2e-12 Identities = 65/75 (87%), Gaps = 1/75 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 215533 TGCTTTCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 215592 Query 79684 TGAGCTACGAAAGCA 79698 ||||||| ||||||| Sbjct 215593 TGAGCTATGAAAGCA 215607 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/74 (86%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 216154 TGCTTTCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 216213 Query 79684 TGAGCTACGAAAGC 79697 ||||||| |||||| Sbjct 216214 TGAGCTATGAAAGC 216227 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/74 (86%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 218166 TGCTTTCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 218225 Query 79684 TGAGCTACGAAAGC 79697 ||||||| |||||| Sbjct 218226 TGAGCTATGAAAGC 218239 >seq39079 Length=861723 Score = 87.8 bits (96), Expect = 2e-12 Identities = 67/78 (86%), Gaps = 1/78 (1%) Strand=Plus/Plus Query 79622 GACTGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACC 79680 || ||||||| |||| |||| |||| ||||||||||||||||||||||||||| ||| Sbjct 645369 GAGTGCTTTCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACC 645428 Query 79681 AATTGAGCTACGAAAGCA 79698 || ||||||| ||||||| Sbjct 645429 AACTGAGCTATGAAAGCA 645446 >seq68341 Length=64295 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/74 (86%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 19366 TGCTTTCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 19425 Query 79684 TGAGCTACGAAAGC 79697 ||||||| |||||| Sbjct 19426 TGAGCTATGAAAGC 19439 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/74 (86%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 34689 TGCTTTCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 34748 Query 79684 TGAGCTACGAAAGC 79697 ||||||| |||||| Sbjct 34749 TGAGCTATGAAAGC 34762 >seq66491 Length=923498 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/74 (86%), Gaps = 1/74 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 432025 TGCTTTCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 431966 Query 79684 TGAGCTACGAAAGC 79697 ||||||| |||||| Sbjct 431965 TGAGCTATGAAAGC 431952 >seq62712 Length=50269 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/74 (86%), Gaps = 1/74 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 6315 TGCTTTCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 6256 Query 79684 TGAGCTACGAAAGC 79697 ||||||| |||||| Sbjct 6255 TGAGCTATGAAAGC 6242 >seq59769 Length=589374 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/74 (86%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 427450 TGCTTTCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 427509 Query 79684 TGAGCTACGAAAGC 79697 ||||||| |||||| Sbjct 427510 TGAGCTATGAAAGC 427523 >seq55895 Length=72245 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/74 (86%), Gaps = 1/74 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 24716 TGCTTTCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 24657 Query 79684 TGAGCTACGAAAGC 79697 ||||||| |||||| Sbjct 24656 TGAGCTATGAAAGC 24643 >seq38817 Length=2399901 Score = 86.0 bits (94), Expect = 7e-12 Identities = 66/77 (86%), Gaps = 1/77 (1%) Strand=Plus/Minus Query 79622 GACTGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACC 79680 || ||||||| |||| |||| |||| ||||||||||||||||||||||||||| ||| Sbjct 2205510 GAATGCTTTCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACC 2205451 Query 79681 AATTGAGCTACGAAAGC 79697 || ||||||| |||||| Sbjct 2205450 AACTGAGCTATGAAAGC 2205434 Score = 86.0 bits (94), Expect = 7e-12 Identities = 66/77 (86%), Gaps = 1/77 (1%) Strand=Plus/Minus Query 79622 GACTGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACC 79680 || ||||||| |||| |||| |||| ||||||||||||||||||||||||||| ||| Sbjct 2205881 GAATGCTTTCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACC 2205822 Query 79681 AATTGAGCTACGAAAGC 79697 || ||||||| |||||| Sbjct 2205821 AACTGAGCTATGAAAGC 2205805 >seq35597 Length=402774 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/74 (86%), Gaps = 1/74 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 302816 TGCTTTCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 302757 Query 79684 TGAGCTACGAAAGC 79697 ||||||| |||||| Sbjct 302756 TGAGCTATGAAAGC 302743 >seq15825 Length=579305 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/74 (86%), Gaps = 1/74 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 543919 TGCTTTCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 543860 Query 79684 TGAGCTACGAAAGC 79697 ||||||| |||||| Sbjct 543859 TGAGCTATGAAAGC 543846 >seq4899 Length=14418 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/74 (86%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 2313 TGCTTTCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 2372 Query 79684 TGAGCTACGAAAGC 79697 ||||||| |||||| Sbjct 2373 TGAGCTATGAAAGC 2386 >seq36031 Length=340655 Score = 82.4 bits (90), Expect = 8e-11 Identities = 85/109 (78%), Gaps = 2/109 (2%) Strand=Plus/Minus Query 119077 GAACACGTTGGCTAGCTTGGCACCGTATCCGTTCCGACCACCGGTCA-CGCGCTGCTCCT 119135 ||| | |||||| |||||||| ||||| ||||||| || ||||| | || |||| | Sbjct 261598 GAAGATGTTGGCGAGCTTGGCGCCGTAGCCGTTCCTCCCGCCGGTGGTCTTGC-GCTCGT 261540 Query 119136 CGTCGTTGTAGTTGGAGCTGGTCAAAAGGTGCCCAAAGATGAGCTCGGG 119184 ||||| ||||||| |||||| | ||||| || |||||||||||||| Sbjct 261539 TGTCGTCGTAGTTGCTGCTGGTGAGGAGGTGGCCGAAGATGAGCTCGGG 261491 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 546747186372400