Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aegilops_20tauschii_20subsp._20tauschii_20[refseq_20GCF_5F001957025. 1_202017-01-19] 68,538 sequences; 4,327,321,625 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq16495 87.8 1e-12 >seq16495 Length=532983 Score = 87.8 bits (96), Expect = 1e-12 Identities = 162/232 (70%), Gaps = 7/232 (3%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||| ||||||||||| || || || || || || | || || || || Sbjct 85434 ATGCAAATCTTTGTGAAAACCCTCACCGGCAAGACCATCACCCTCGAGGTTGAGTCTTCC 85493 Query 27850 GAC--GATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGAT-GGAG 27906 ||| ||| ||||| |||||| || || ||||| || || | || ||| Sbjct 85494 GACACGATCGACAAT--GTCAAAGCGAAGATCTAGGACAAGGAGGGCATCCCCCCCGGAC 85551 Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAG-CTTGTCCGATTA 27965 ||||| ||||| || |||||||| |||||| | || || | |||| |||| | ||||| Sbjct 85552 CAGCAGCGGTTGATCTTTGCCGGCAAACAACTTGAGGATGGGCGCACACTTG-CTGATTA 85610 Query 27966 CAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGGC 28017 ||||||||| |||||| ||| | || |||||| | ||| | ||||| ||| Sbjct 85611 CAACATCCAGAAAGAGTCCACCCTCCACTTGGTTCTCCGTCTCCGTGGTGGC 85662 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355565145690726