Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aegilops_20tauschii_20subsp._20tauschii_20[refseq_20GCF_5F001957025. 1_202017-01-19] 68,538 sequences; 4,327,321,625 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq66718 102 1e-16 seq55038 84.2 3e-11 >seq66718 Length=721455 Score = 102 bits (112), Expect = 1e-16 Identities = 155/221 (70%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 76754 CCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCG 76813 || || ||||||| ||| | ||||| | ||| | || | ||||| |||| ||| || Sbjct 180497 CCACCTTGATCTACATAACGAGCAGTATCATTGAAGACACGTAACATAGGAACAATCCCA 180556 Query 76814 TTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGAT 76873 || ||||| ||||||||||| ||||||||| ||| |||||||| || || || Sbjct 180557 TTGGATGTCCCATTTGTTCCTCGAATATAACTCCCAGTAGCACGAATGTTGTGAACTGAG 180616 Query 76874 AGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGATG 76933 | || || ||||| || ||| || | |||||| || | || |||||||| Sbjct 180617 ACACCAATCCCTCCAGCAGATTTGCTTATGACAGCACATTCCTTGAGAGTATCATAGATT 180676 Query 76934 CCCTCTATACTATCATCCATCATGTTAAGAAGAAAACAGCT 76974 ||||| || |||||||| ||||| | ||| |||||||| Sbjct 180677 CCCTCAATGCTATCATCTTTCATGCAGATAAGGAAACAGCT 180717 >seq55038 Length=538077 Score = 84.2 bits (92), Expect = 3e-11 Identities = 112/154 (73%), Gaps = 4/154 (3%) Strand=Plus/Minus Query 76493 TCTCTTTCATATTG--TGTATATAACCGTTCAAATTCATCTCCCCAAACATCATCCAAAC 76550 ||||||||||||| |||| | | | | ||| ||||||||||| |||| |||||| Sbjct 92159 TCTCTTTCATATTTGTTGTACAGATTC--TGAAACTCATCTCCCCAGCAATCAGCCAAAC 92102 Query 76551 CAGGACATTCATTCGGACACATCAATGACCACTCACCATCTTCCTTAACCCGTTTCATAA 76610 | ||| |||| | ||||| | |||||||| | ||| || | |||| || ||| | Sbjct 92101 CTGGAGCTTCACTGGGACAAAATAATGACCATTGCTCATTTTTTTGCACCCTTTCCATGA 92042 Query 76611 AGAGATCAGGTATCCATAGAGCAATAAATAGATC 76644 | | |||||| ||||| |||||| ||| ||||| Sbjct 92041 ATAAATCAGGAATCCAGAGAGCATAAAAAAGATC 92008 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712323611276160