Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ananas_20comosus_20[refseq_20GCF_5F001540865.1_202016-03-14] 3,129 sequences; 382,055,938 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq433 111 3e-19 seq21 111 3e-19 seq11 100 6e-16 seq24 98.7 2e-15 seq20 98.7 2e-15 seq17 98.7 2e-15 seq16 98.7 2e-15 seq9 98.7 2e-15 seq1 98.7 2e-15 seq2 95.1 3e-14 >seq433 Length=30188 Score = 111 bits (122), Expect = 3e-19 Identities = 306/464 (66%), Gaps = 9/464 (2%) Strand=Plus/Plus Query 230170 TCGTTTGCCGAGCGTCTCGTCGCCTGGGTGTGTGTTGAAGGTATTCTGTTTTCCGGGAGT 230229 || || |||||||| |||||||||| | || || || || | | || ||||| Sbjct 24082 TCCTTCGCCGAGCGCCTCGTCGCCTTCGCCTGCGTCGAGGGCGTCTTCTTCTCCGGCTCC 24141 Query 230230 TTCTGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAAC 230289 |||||||||||||| ||||| ||| || | ||||| |||||| | || ||| Sbjct 24142 TTCTGCGCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCCGGCCTCACCTTCTCCAAC 24201 Query 230290 GAGTTCATCAGTCGCGACGAGGGTCTCCATCAACAGTTCGGCGAGCTTATGTATTCAAAG 230349 ||| ||||| ||||||||||| ||||| | |||| | || | || || Sbjct 24202 GAGCTCATCTCCCGCGACGAGGGCCTCCACTGCGACTTCGCCTGCCTCCTCTACTCCCTC 24261 Query 230350 CTCCAGAACAAGCTACCATTCGAGACG---GTCAAACAAATCATTACAGAAGCAGTTGAA 230406 |||| | || || |||| | ||| ||| | || || || || Sbjct 24262 CTCCGCCGCCGCCTCCC---CGAGCCCCGCGTCCGCGCCATCGTCCGCGACGCCGTCGAC 24318 Query 230407 AACGAAAAGGAGTTCATTTGTGACGCTATTCCATGTCGCCTTATT-GGCATGAACGCTGA 230465 | ||| |||||| | || ||||| | || |||||| | | |||||||||| Sbjct 24319 ATCGAGCGCGAGTTCGTCTGCGACGCCCTCCCC-GTCGCCCTCGTCGGCATGAACGGCCG 24377 Query 230466 ACTTATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTTGTTGCACTTGGTTACGA 230525 || ||| | ||||||||||| ||||| ||||||||| | | | || || || | || Sbjct 24378 CCTCATGAGCCAGTACATCGAGTTCGTCGCCGACCGCCTCCTCGCCGCCCTCGGCTGCGC 24437 Query 230526 GAAAGTGTACAACTCTAAGAACCCCTTTGCATTTATGGAGCTCATTTCGCTTCAAGGGAA 230585 || ||||| | |||||||| | | ||||||||||| || || || || || Sbjct 24438 CAAGATGTACGCCGTCGCCAACCCCTTCGACTGGATGGAGCTCATCTCCCTCCAGGGCAA 24497 Query 230586 GACCAACTTCTTCGAAAAGCGTGTCAGTGACTATCAG-AGGCCT 230628 ||||||||||||||| ||||| ||| | || || ||| |||||| Sbjct 24498 GACCAACTTCTTCGAGAAGCGCGTCGGCGAGTACCAGAAGGCCT 24541 >seq21 Length=10645290 Score = 111 bits (122), Expect = 3e-19 Identities = 306/464 (66%), Gaps = 9/464 (2%) Strand=Plus/Plus Query 230170 TCGTTTGCCGAGCGTCTCGTCGCCTGGGTGTGTGTTGAAGGTATTCTGTTTTCCGGGAGT 230229 || || |||||||| |||||||||| | || || || || | | || ||||| Sbjct 999303 TCCTTCGCCGAGCGCCTCGTCGCCTTCGCCTGCGTCGAGGGCGTCTTCTTCTCCGGCTCC 999362 Query 230230 TTCTGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAAC 230289 |||||||||||||| ||||| ||| || | ||||| |||||| | || ||| Sbjct 999363 TTCTGCGCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCCGGCCTCACCTTCTCCAAC 999422 Query 230290 GAGTTCATCAGTCGCGACGAGGGTCTCCATCAACAGTTCGGCGAGCTTATGTATTCAAAG 230349 ||| ||||| ||||||||||| ||||| | |||| | || | || || Sbjct 999423 GAGCTCATCTCCCGCGACGAGGGCCTCCACTGCGACTTCGCCTGCCTCCTCTACTCCCTC 999482 Query 230350 CTCCAGAACAAGCTACCATTCGAGACG---GTCAAACAAATCATTACAGAAGCAGTTGAA 230406 |||| | || || |||| | ||| ||| | || || || || Sbjct 999483 CTCCGCCGCCGCCTCCC---CGAGCCCCGCGTCCGCGCCATCGTCCGCGACGCCGTCGAC 999539 Query 230407 AACGAAAAGGAGTTCATTTGTGACGCTATTCCATGTCGCCTTATT-GGCATGAACGCTGA 230465 | ||| |||||| | || ||||| | || |||||| | | |||||||||| Sbjct 999540 ATCGAGCGCGAGTTCGTCTGCGACGCCCTCCCC-GTCGCCCTCGTCGGCATGAACGGCCT 999598 Query 230466 ACTTATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTTGTTGCACTTGGTTACGA 230525 || ||| | ||||||||||| ||||| ||||||||| | | | || || || | || Sbjct 999599 CCTCATGAGCCAGTACATCGAGTTCGTCGCCGACCGCCTCCTCGCCGCCCTCGGCTGCGC 999658 Query 230526 GAAAGTGTACAACTCTAAGAACCCCTTTGCATTTATGGAGCTCATTTCGCTTCAAGGGAA 230585 || ||||| | |||||||| | | ||||||||||| || || || || || Sbjct 999659 CAAGATGTACGCCGTCGCCAACCCCTTCGACTGGATGGAGCTCATCTCCCTCCAGGGCAA 999718 Query 230586 GACCAACTTCTTCGAAAAGCGTGTCAGTGACTATCAG-AGGCCT 230628 ||||||||||||||| ||||| ||| | || || ||| |||||| Sbjct 999719 GACCAACTTCTTCGAGAAGCGCGTCGGCGAGTACCAGAAGGCCT 999762 >seq11 Length=13096665 Score = 100 bits (110), Expect = 6e-16 Identities = 74/85 (87%), Gaps = 1/85 (1%) Strand=Plus/Minus Query 165697 ACTTAAAACGCTTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGT 165756 |||||| | || |||||||||||||||| |||||||||| || || |||| || ||||| Sbjct 11804273 ACTTAATAA-CTAGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGT 11804215 Query 165757 CGTGGGTTCGAGCCCCACGATGGGC 165781 ||||||||||||||||||| ||||| Sbjct 11804214 CGTGGGTTCGAGCCCCACGGTGGGC 11804190 >seq24 Length=7684463 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 6104582 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 6104641 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 6104642 CCCACGGTGGGC 6104653 >seq20 Length=10792357 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 9673454 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 9673513 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 9673514 CCCACGGTGGGC 9673525 >seq17 Length=11156084 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 3195580 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 3195521 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 3195520 CCCACGGTGGGC 3195509 >seq16 Length=11174208 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 9853758 GCCCGTCTAGCTCAGTAGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 9853699 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 9853698 CCCACGGTGGGC 9853687 >seq9 Length=13841557 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 235621 GCCCGTCTAGCTCAGTAGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 235680 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 235681 CCCACGGTGGGC 235692 >seq1 Length=24880688 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 21550459 GCCCGTCTAGCTCAGTAGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 21550518 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 21550519 CCCACGGTGGGC 21550530 Score = 95.1 bits (104), Expect = 3e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| ||||| |||| || || |||| || |||||||||||||||||| Sbjct 1253129 GCCCGTCTAGCTCAGTAGGTAGGGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 1253188 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 1253189 CCCACGGTGGGC 1253200 >seq2 Length=17334668 Score = 95.1 bits (104), Expect = 3e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| |||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 14092805 GCCCGCCTAGCTCAGTAGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 14092864 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 14092865 CCCACGGTGGGC 14092876 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057781591505270