Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ananas_20comosus_20[refseq_20GCF_5F001540865.1_202016-03-14] 3,129 sequences; 382,055,938 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq3 107 3e-18 >seq3 Length=16781886 Score = 107 bits (118), Expect = 3e-18 Identities = 164/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597 ||||| || ||| | ||||| || || || || || || ||| | ||| |||| ||| Sbjct 16131712 ATGCAGATTTTTGTGAAGACCCTCACTGGAAAGACCATCACTCTCGAGGTTGAGAGCTC- 16131770 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||| |||||| || | || ||||||||||| |||||||| || | || ||||| Sbjct 16131771 TGACACAATTGAAAACCTGAAGGGTAAAATTCAAGACAAAGAAGGAATCCTTCCCGATCA 16131830 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 || |||| || ||||| || || ||||| |||||| | || || ||| ||| || || Sbjct 16131831 GCAGCGGCTCATATTTGCTGGGAAGCAATTGGAGGATGGCCGGACCTTATCAGAGTACAA 16131890 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || ||||| || || || | ||||||||| | || | || ||||| || Sbjct 16131891 CATCCAAAAGGAGTCCACCCTTCATTTGGTTCTTCGCCTCCGCGGTGGAAT 16131941 Score = 107 bits (118), Expect = 3e-18 Identities = 164/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597 ||||| || ||| | ||||| || || || || || || ||| | ||| |||| ||| Sbjct 16199516 ATGCAGATTTTTGTGAAGACCCTCACTGGAAAGACCATCACTCTCGAGGTTGAGAGCTC- 16199574 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||| |||||| || | || ||||||||||| |||||||| || | || ||||| Sbjct 16199575 TGACACAATTGAAAACCTGAAGGGTAAAATTCAAGACAAAGAAGGAATCCTTCCCGATCA 16199634 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 || |||| || ||||| || || ||||| |||||| | || || ||| ||| || || Sbjct 16199635 GCAGCGGCTCATATTTGCTGGGAAGCAATTGGAGGATGGCCGGACCTTATCAGAGTACAA 16199694 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || ||||| || || || | ||||||||| | || | || ||||| || Sbjct 16199695 CATCCAAAAGGAGTCCACCCTTCATTTGGTTCTTCGCCTCCGCGGTGGAAT 16199745 Score = 104 bits (114), Expect = 4e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| | ||||| || || || || || |||||| | ||| |||| | | Sbjct 16131484 ATGCAGATTTTTGTCAAGACCCTTACCGGAAAGACCATAACTCTGGAGGTTGAGACCTCT 16131543 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||||||| || | || |||||||| || || ||||| || || | || || Sbjct 16131544 GATACAATTGAGAACGTCAAGGCAAAAATTCAGGACAAGGAAGGCATCCCCTCAGACCAG 16131603 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || ||||| || ||||| || || ||| | ||||| | |||| | ||||| ||| Sbjct 16131604 CAGAGGCTCATCTTTGCTGGCAAGCAACTCGAGGACGGGAGAACTCTGTCCGATTACAAT 16131663 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 |||| |||||||||||| | ||| | ||| | ||||| |||| || || Sbjct 16131664 GTTCAGAAAGAATCAACTCTCCATCTTGTTCTCCGTTTGAGAGGGGGGAT 16131713 Score = 104 bits (114), Expect = 4e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| | ||||| || || || || || |||||| | ||| |||| | | Sbjct 16199288 ATGCAGATTTTTGTCAAGACCCTTACCGGAAAGACCATAACTCTGGAGGTTGAGACCTCT 16199347 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||||||| || | || |||||||| || || ||||| || || | || || Sbjct 16199348 GATACAATTGAGAACGTCAAGGCAAAAATTCAGGACAAGGAAGGCATCCCCTCAGACCAG 16199407 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || ||||| || ||||| || || ||| | ||||| | |||| | ||||| ||| Sbjct 16199408 CAGAGGCTCATCTTTGCTGGCAAGCAACTCGAGGACGGGAGAACTCTGTCCGATTACAAT 16199467 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 |||| |||||||||||| | ||| | ||| | ||||| |||| || || Sbjct 16199468 GTTCAGAAAGAATCAACTCTCCATCTTGTTCTCCGTTTGAGAGGGGGGAT 16199517 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755426452227200