Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ananas_20comosus_20[refseq_20GCF_5F001540865.1_202016-03-14] 3,129 sequences; 382,055,938 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq3 98.7 8e-16 seq2 89.7 4e-13 >seq3 Length=16781886 Score = 98.7 bits (108), Expect = 8e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || || | |||||| ||||||||||| |||| |||||||| | || || | || || Sbjct 16131467 AGGACGAGGTGAAGGGTTGATTCTTTCTGAACATTGTAGTCCGACAGAGTGTGACCGTCC 16131408 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 || | ||||||||| ||| |||| || ||||| |||||| ||| | ||| ||||| || Sbjct 16131407 TCGAGTTGTTTGCCTGCAAAGATGAGCCTTTGCTGATCCGAGGGGATGCCCTCCTTGTCC 16131348 Query 18234 GCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTT 18293 || | |||||| | | | | ||||| | ||| || | ||||||| | Sbjct 16131347 TGGATCTTGGCCTTGACGTTTTCGATCGTGTCGGAGCTCTCAACCTCCAAGGTGATGGTC 16131288 Query 18294 TTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || ||||| | || |||||||| |||||||| Sbjct 16131287 TTTCCGGTGAGAGTCTTTACAAAGATTTGCAT 16131256 Score = 98.7 bits (108), Expect = 8e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || || | |||||| ||||||||||| |||| |||||||| | || || | || || Sbjct 16199271 AGGACGAGGTGAAGGGTTGATTCTTTCTGAACATTGTAGTCTGACAGAGTGTGACCGTCC 16199212 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 || | ||||||||| ||| |||| || ||||| |||||| ||| | ||| ||||| || Sbjct 16199211 TCGAGTTGTTTGCCTGCAAAGATGAGCCTTTGCTGATCCGAGGGGATGCCCTCCTTGTCC 16199152 Query 18234 GCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTT 18293 || | |||||| | | | | ||||| | ||| || | ||||||| | Sbjct 16199151 TGGATCTTGGCCTTGACGTTTTCGATCGTGTCGGAGCTCTCAACCTCCAAGGTGATGGTC 16199092 Query 18294 TTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || ||||| | || |||||||| |||||||| Sbjct 16199091 TTTCCGGTGAGAGTCTTTACAAAGATTTGCAT 16199060 Score = 82.4 bits (90), Expect = 6e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 18123 TGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGT 18182 || || ||||||||||| |||| ||||| |||| || ||| | | || || | ||| Sbjct 16131686 TGGAGAGTTGATTCTTTCTGAACATTGTAATCGGACAGAGTTCTCCCGTCCTCGAGTTGC 16131627 Query 18183 TTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGT 18242 ||||| ||| |||| || || || || || ||| | ||||||||| || ||||| | Sbjct 16131626 TTGCCAGCAAAGATGAGCCTCTGCTGGTCTGAGGGGATGCCTTCCTTGTCCTGAATTTTT 16131567 Query 18243 TGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTC 18302 |||||| | ||| || ||| || ||| || | || ||| | || ||||| Sbjct 16131566 GCCTTGACGTTCTCAATTGTATCAGAGGTCTCAACCTCCAGAGTTATGGTCTTTCCGGTA 16131507 Query 18303 AATGTTTTTACAAAAATTTGCAT 18325 | || || |||||||| ||||| Sbjct 16131506 AGGGTCTTGACAAAAATCTGCAT 16131484 Score = 82.4 bits (90), Expect = 6e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 18123 TGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGT 18182 || || ||||||||||| |||| ||||| |||| || ||| | | || || | ||| Sbjct 16199490 TGGAGAGTTGATTCTTTCTGAACATTGTAATCGGACAGAGTTCTCCCGTCCTCGAGTTGC 16199431 Query 18183 TTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGT 18242 ||||| ||| |||| || || || || || ||| | ||||||||| || ||||| | Sbjct 16199430 TTGCCAGCAAAGATGAGCCTCTGCTGGTCTGAGGGGATGCCTTCCTTGTCCTGAATTTTT 16199371 Query 18243 TGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTC 18302 |||||| | ||| || ||| || ||| || | || ||| | || ||||| Sbjct 16199370 GCCTTGACGTTCTCAATTGTATCAGAGGTCTCAACCTCCAGAGTTATGGTCTTTCCGGTA 16199311 Query 18303 AATGTTTTTACAAAAATTTGCAT 18325 | || || |||||||| ||||| Sbjct 16199310 AGGGTCTTGACAAAAATCTGCAT 16199288 >seq2 Length=17334668 Score = 89.7 bits (98), Expect = 4e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || |||| || || | |||| |||||| || ||||| || |||||||||||||| || Sbjct 1903448 CCACCCCTGAGCCTCAAAACCAAGTGAAGGGTCGATTCCTTCTGAATGTTGTAGTCTGCT 1903507 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || | ||||||||| ||||| || ||| | ||||||||||| || || ||| Sbjct 1903508 AAGGTGCGGCCATCTTCCAACTGTTTCCCAGCAAATATAAGTCTTTGCTGGTCTGGGGGT 1903567 Query 18219 ACGCCTTCCTTATC 18232 | ||| |||||||| Sbjct 1903568 ATGCCCTCCTTATC 1903581 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379329533835105