Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ananas_20comosus_20[refseq_20GCF_5F001540865.1_202016-03-14] 3,129 sequences; 382,055,938 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq5 84.2 3e-11 seq2 82.4 1e-10 >seq5 Length=15024279 Score = 84.2 bits (92), Expect = 3e-11 Identities = 157/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 63659 AGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAG 63718 || ||| || ||||| |||| || || ||||| || || ||||| || || | | Sbjct 11649136 AGGAGTGCCAGCATTGAATAGTGTTGGGGAAGCATGAGTGAACCAACGTTGGGACATCAA 11649077 Query 63719 ATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCAT 63778 || |||||| ||| | || || ||||| || || ||||| || || || | ||| Sbjct 11649076 ATGGTACGTTCTGATAACAGACTCGATATCATCTTTGTGGATTCCAACAGCAACTCTCAT 11649017 Query 63779 TAACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTC 63838 || ||||||||| || ||||| || | || | |||||| | |||||| | || Sbjct 11649016 TAGCATGTGCTGTGGCCTTTCTACTACCTTTCCAGAAACTTTCAAGAGATAGGATCTCTC 11648957 Query 63839 CAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 63889 | ||| || ||||||||||||| || ||||||| || ||||| || Sbjct 11648956 AAGAGTCTTGAAACCAAAATAGTCATAGTCGAAGTCTCTGTCATAAATTAT 11648906 >seq2 Length=17334668 Score = 82.4 bits (90), Expect = 1e-10 Identities = 90/120 (75%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 33582 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGT 33641 || ||||| |||||||| || |||||||| | || | ||||| || || ||||| Sbjct 14397015 CAAGCGAAGTCGCAGTGGAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGC 14396956 Query 33642 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAG 33701 |||||||| ||||||||||| || ||||| || |||| | | || ||||| |||||| Sbjct 14396955 CCGGGCATGAGGCCACGCTTCTTGAGCCAGAAGATGGCTCAGCAGGAGCCGGAGAAGAAG 14396896 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629792966259120