Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ananas_20comosus_20[refseq_20GCF_5F001540865.1_202016-03-14] 3,129 sequences; 382,055,938 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq5 96.9 5e-15 >seq5 Length=15024279 Score = 96.9 bits (106), Expect = 5e-15 Identities = 154/221 (70%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 66216 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 66275 || || ||||| | || | ||| || | |||| | |||| || ||| |||| ||| ||| Sbjct 11649874 CCCCCTTGATCAACATAACGAGCAGTATCATTAAACACTCGCAGCATAGGAACAATCCCA 11649815 Query 66276 TTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTTGCACGAATATTACTAATTGAT 66335 || || || ||||| ||||| || || || ||| |||||||||| || ||| || Sbjct 11649814 TTAGAAGTCCCATTTGTCCCACGAATGTAACTCCCAGTTGCACGAATGTTGTGAATAGAA 11649755 Query 66336 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATG 66395 | ||| ||||| ||||| ||| || | || || || | |||||||| || Sbjct 11649754 ACACCAATTCCTCCTGCGGATTTGCTTATGACAGCACACTCCTTCAGAGTATCATAAATT 11649695 Query 66396 CCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCT 66436 ||||| |||||||| || ||||| | ||||||||||| Sbjct 11649694 CCCTCAATACTATCCTCTTTCATGCAGACAAGAAAACAGCT 11649654 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 66455 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATT 66514 ||| || ||||| |||| || || ||||| || || ||||| || || | | || Sbjct 11649133 AGTGCCAGCATTGAATAGTGTTGGGGAAGCATGAGTGAACCAACGTTGGGACATCAAATG 11649074 Query 66515 GTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAA 66574 |||||| ||| | || || ||||| || || ||||| || || || | ||||| Sbjct 11649073 GTACGTTCTGATAACAGACTCGATATCATCTTTGTGGATTCCAACAGCAACTCTCATTAG 11649014 Query 66575 CATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAA 66634 ||||||||| || ||||| || | ||| | |||||| | |||||| | || | Sbjct 11649013 CATGTGCTGTGGCCTTTCTACTACCTTTCCAGAAACTTTCAAGAGATAGGATCTCTCAAG 11648954 Query 66635 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 66682 ||| || ||||||||||||| || ||||||| || ||||| || Sbjct 11648953 AGTCTTGAAACCAAAATAGTCATAGTCGAAGTCTCTGTCATAAATTAT 11648906 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658147057216360