Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ananas_20comosus_20[refseq_20GCF_5F001540865.1_202016-03-14] 3,129 sequences; 382,055,938 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq8 105 7e-18 seq12 100 3e-16 seq3 98.7 1e-15 seq7 96.9 3e-15 seq1443 91.5 1e-13 seq4 86.0 6e-12 >seq8 Length=13970067 Score = 105 bits (116), Expect = 7e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| || | ||| | || || | ||| | || || || || ||||||||||| || Sbjct 10823951 GCCACCCCTTAACCTCAGCACAAGGTGGAGGGTGGATTCCTTCTGAATGTTATAGTCTGC 10824010 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | |||| ||| |||||||| || |||||| |||||| || ||||| |||||||| Sbjct 10824011 AAGGGTGCGGCCGTCCTCGAGCTGCTTGCCAGCAAAGATCAAGCGCTGCTGGTCGGGAGG 10824070 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 ||||| || ||||| ||| || || | | || | ||||||| | |||||| Sbjct 10824071 GATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCGGAGCTCTCCAC 10824130 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||||| ||| | ||||||||||| | ||||| || || || ||||| Sbjct 10824131 CTCAAGGGTGATGGTCTTGCCGGTGAGGGTTTTCACAAAAATCTGCAT 10824178 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 139555 AACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTC 139614 ||| | ||| | ||| ||||| || || ||||| || ||| | |||| ||| || Sbjct 10824197 AACGAGGTGGAGCGTGGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGGCCGTCCTC 10824256 Query 139615 GAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGT 139674 |||||| || || || |||| || || ||||| || || || |||||||| ||||| Sbjct 10824257 GAGCTGCTTGCCGGCGAAGATAAGCCGCTGCTGGTCCGGGGGAATGCCTTCCTTGTCCTG 10824316 Query 139675 GATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTT 139734 ||| || || | | || | ||||| | | ||||||||||| ||| | ||||| Sbjct 10824317 GATCTTGGCCTTGACATTGTCGATGGTGTCAGAGCTCTCCACCTCAAGGGTGATGGTCTT 10824376 Query 139735 GCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||||| | ||||| ||||| || ||||| Sbjct 10824377 GCCGGTGAGGGTTTTCACGAAGATCTGCAT 10824406 Score = 91.5 bits (100), Expect = 1e-13 Identities = 150/214 (70%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 139552 CAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTC 139611 ||| || | ||| | || |||||||| || ||||| ||||| | ||||| || Sbjct 10823738 CAACACGAGGTGGAGGGTGGACTCTTTCTGGATGTTGTAATCCGCAAGTGTGCGGCCATC 10823797 Query 139612 TTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTC 139671 |||||||| || || || |||||||||| |||||||| || || ||||| || || || Sbjct 10823798 CTCGAGCTGCTTCCCGGCGAAGATCAGACGCTGCTGATCCGGGGGAATGCCCTCCTTATC 10823857 Query 139672 GGTGATTTTTTGTTTTAGCTGT-TCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCG 139730 ||| | || | || | | || | ||||||| | ||||||||||| ||| | | Sbjct 10823858 C-TGAATCTTGGCCTTGACATTATCGATGGTGTCGGAGCTCTCCACCTCAAGGGTAATAG 10823916 Query 139731 TCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||| || || | || || ||||| || ||||| Sbjct 10823917 TCTTACCCGTGAGGGTCTTCACGAAAATCTGCAT 10823950 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 ||||| | ||||| | ||| | ||| | || ||||| |||||||||||||| ||| Sbjct 10823496 CCGCCCCTCAAACGAAGAACAAGGTGGAGGGTGGACTCCTTTTGAATGTTATAGTCGGCA 10823555 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | |||| || || ||||| || || || |||| || || ||||| || ||||| Sbjct 10823556 AGGGTGCGGCCATCCTCAAGCTGCTTGCCCGCGAAGATGAGGCGCTGCTGGTCCGGAGGG 10823615 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 ||||| || ||||| ||| | || | ||| | | || | ||||| | | || || Sbjct 10823616 ATGCCCTCCTTGTC-CTGAATCTTCGCTTTCACGTTATCAATGGTGTCCGAGCTTTCAAC 10823674 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||||| ||| | |||||||| || | || || || || || ||||| Sbjct 10823675 CTCAAGGGTAATGGTCTTGCCAGTGAGGGTCTTCACAAAGATCTGCAT 10823722 >seq12 Length=12612916 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 |||||| || | ||| | || | ||| | ||| ||||| || || ||||| || || Sbjct 12401242 GCCGCCACGGAGACGGAGCACGAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCCGC 12401183 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 || |||| ||| || | ||| || || || |||||||||| ||||| || || || Sbjct 12401182 CAGAGTGCGGCCGTCCTCCAACTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCCGGCGG 12401123 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 || || || ||||| ||||||| || | | || | ||||||| || ||| || Sbjct 12401122 GATCCCCTCCTTGTCCTGGATTTTTGCCTTAACATTGTCGATGGTGTCGGAGGACTCGAC 12401063 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||| | ||| | ||||||||||||| || || ||||| || ||||| Sbjct 12401062 CTCGAGGGTGATGGTCTTGCCGGTCAGGGTCTTGACGAAGATCTGCAT 12401015 Score = 86.0 bits (94), Expect = 6e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 139535 TGGCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCG 139594 ||||| || || | || | ||| | ||| | || || || || || ||||| || || Sbjct 12401472 TGGCCACCGCGAAGGCGGAGAACCAGGTGGAGGGTTGATTCCTTCTGGATGTTGTAGTCC 12401413 Query 139595 CTCATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGA 139654 || |||| ||| || | ||| ||||| || |||| || || ||||| || || Sbjct 12401412 GCCAGAGTGCGGCCGTCCTCCAACTGCTTACCGGCGAAGATGAGCCGCTGCTGGTCCGGT 12401353 Query 139655 GGTATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCC 139714 || ||||| || ||||| ||| || ||| | | || | ||||||| | |||| Sbjct 12401352 GGGATGCCCTCCTTGTCCTGGATCTTAGCTTTGACGTTGTCGATCGTGTCGGAGCTCTCC 12401293 Query 139715 ACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||||| | ||| | ||||||||||||| || || ||||| || ||||| Sbjct 12401292 ACCTCGAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 12401243 >seq3 Length=16781886 Score = 98.7 bits (108), Expect = 1e-15 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || ||||| ||||| ||||| || || | ||||| ||| ||||| ||||||||| Sbjct 16131224 GTTGACTCCTTTTGGATGTTGTACTCTGAGAGTGTGCGGCCGTCCTCGAGTTGTTTACCA 16131165 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 ||| |||| || | ||||| || ||||| ||||| || ||||| ||| || || Sbjct 16131164 GCAAAGATAAGCCTCTGCTGGTCCGGAGGAATGCCCTCCTTGTCCTGGATCTTCGACTTC 16131105 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | ||| | |||||||| | ||| ||||| | || | ||||||||||| | || Sbjct 16131104 ACATTTTCAATTGTGTCGGAGCTCTCAACCTCCAAAGTGATGGTCTTGCCGGTGAGAGTC 16131045 Query 139748 TTTACGAATATTTGCAT 139764 || ||||| || ||||| Sbjct 16131044 TTCACGAAGATCTGCAT 16131028 Score = 98.7 bits (108), Expect = 1e-15 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || ||||| ||||| ||||| || || | ||||| ||| ||||| ||||||||| Sbjct 16199028 GTTGACTCCTTTTGGATGTTGTACTCTGAGAGTGTGCGGCCGTCCTCGAGTTGTTTACCA 16198969 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 ||| |||| || | ||||| || ||||| ||||| || ||||| ||| || || Sbjct 16198968 GCAAAGATAAGCCTCTGCTGGTCCGGAGGAATGCCCTCCTTGTCCTGGATCTTCGACTTC 16198909 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | ||| | |||||||| | ||| ||||| | || | ||||||||||| | || Sbjct 16198908 ACATTTTCAATTGTGTCGGAGCTCTCAACCTCCAAAGTGATGGTCTTGCCGGTGAGAGTC 16198849 Query 139748 TTTACGAATATTTGCAT 139764 || ||||| || ||||| Sbjct 16198848 TTCACGAAGATCTGCAT 16198832 >seq7 Length=14728688 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 ||||| || | ||| | || | |||| || || || ||||| ||||| || ||| Sbjct 13849653 CCGCCGCGGAGACGGAGGACAAGATGAAGGGTGGATTCCTTTTGGATGTTGTAGTCGGCG 13849594 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | |||| ||| |||||||| || || || |||| ||||| |||||||| || || Sbjct 13849593 AGGGTGCGGCCGTCCTCGAGCTGCTTCCCGGCGAAGATGAGACGCTGCTGATCCGGGGGA 13849534 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 || || || ||||| ||| || || | | || | ||||||| | ||||||| Sbjct 13849533 ATCCCCTCCTTGTCCTGGATCTTGGCCTTCACATTGTCGATGGTGTCGGAGCTCTCCACC 13849474 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 |||| ||| | |||||| || || | ||||| ||||| || |||||| Sbjct 13849473 TCAAGGGTGATCGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCATA 13849426 Score = 93.3 bits (102), Expect = 4e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 139561 GTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTG 139620 ||||| || || || || || ||||| || ||| | |||| ||| |||||||| Sbjct 13850314 GTGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGGCCGTCCTCGAGCTG 13850255 Query 139621 TTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTT 139680 ||||| ||| |||||||||| ||||| || || || || || || ||||| ||| || Sbjct 13850254 CTTACCTGCAAAGATCAGACGCTGCTGGTCCGGTGGGATCCCCTCCTTGTCCTGGATCTT 13850195 Query 139681 TTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGT 139740 || | | || | ||||||| | ||| ||||| | ||| | |||||||||||| Sbjct 13850194 CGCCTTGACATTGTCGATGGTGTCGGAGCTCTCGACCTCGAGGGTGATCGTCTTGCCGGT 13850135 Query 139741 CAACGTTTTTACGAATATTTGCAT 139764 | || || ||||| || ||||| Sbjct 13850134 GAGGGTCTTGACGAAGATCTGCAT 13850111 >seq1443 Length=10899 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 |||||| || | ||| | || | ||| | ||| ||||| || || ||||| || || Sbjct 8179 GCCGCCACGGAGACGGAGCACGAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCCGC 8238 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | |||| ||| || | ||| || || || |||||||||| ||||| || || || Sbjct 8239 AAGAGTGCGGCCGTCCTCCAACTGCTTGCCTGCGAAGATCAGACGCTGCTGGTCCGGGGG 8298 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 || || || ||||| |||||| || | | || | ||||||| || ||| || Sbjct 8299 GATCCCCTCCTTGTCCTGGATTTTGGCCTTGACATTGTCGATGGTGTCGGAGGACTCGAC 8358 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||| | ||| | ||||||||||||| || || ||||| || ||||| Sbjct 8359 CTCGAGGGTGATGGTCTTGCCGGTCAGGGTCTTGACGAAGATCTGCAT 8406 Score = 86.0 bits (94), Expect = 6e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 139535 TGGCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCG 139594 ||||| || || | || | || | ||| | || || || || || ||||| || || Sbjct 7949 TGGCCACCGCGCAGGCGAAGGACGAGGTGGAGGGTTGATTCCTTCTGGATGTTGTAGTCC 8008 Query 139595 CTCATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGA 139654 || |||| ||| || | ||| ||||| ||| |||| || || ||||| || || Sbjct 8009 GCCAGAGTGCGGCCGTCCTCCAACTGCTTACCGGCAAAGATGAGCCGCTGCTGGTCCGGC 8068 Query 139655 GGTATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCC 139714 || ||||| || ||||| ||| || ||| | | || | ||||||| || ||| Sbjct 8069 GGGATGCCCTCCTTGTCCTGGATCTTAGCTTTGACGTTGTCGATCGTGTCGGAGGACTCG 8128 Query 139715 ACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||||| | ||| | ||||||||||||| || || ||||| || ||||| Sbjct 8129 ACCTCGAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 8178 Score = 82.4 bits (90), Expect = 8e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 |||||| || | ||| | || | ||| | ||| ||||| || || ||||| || || Sbjct 8407 GCCGCCACGGAGACGGAGGACGAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCCGC 8466 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | |||| ||| || | ||| || || || |||||| || ||||| || || || Sbjct 8467 GAGAGTGCGGCCGTCCTCCAACTGCTTGCCGGCGAAGATCAACCGCTGCTGGTCCGGGGG 8526 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 || || || ||||| |||||| || | | || | ||||||| | ||| || Sbjct 8527 GATCCCCTCCTTGTCCTGGATTTTGGCCTTGACATTGTCGATGGTGTCGGACGACTCGAC 8586 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||| | ||| | ||||||||||||| || || ||||| |||||||| Sbjct 8587 CTCGAGGGTGATGGTCTTGCCGGTCAGGGTCTTGACGAAGATTTGCAT 8634 >seq4 Length=15584765 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 ||||| || | || | || | ||| | ||| ||||| || || ||||| || ||| Sbjct 384534 CCGCCGCGGAGGCGGAGGACGAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCT 384475 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || | | || |||||||| || || || |||| || || ||||||||||| || Sbjct 384474 AGGGTTCGCCCATCCTCGAGCTGCTTCCCGGCGAAGATGAGGCGCTGCTGATCGGGGGGG 384415 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 || ||||| ||||| ||| ||| || | | || | ||||| | || ||||||| Sbjct 384414 ATCCCTTCCTTGTCCTGGATCTTTGCCTTCACATTGTCGATCGTGTCCGAGGACTCCACC 384355 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||| ||| | ||||| || || | || || || || || ||||| Sbjct 384354 TCAAGGGTGATTGTCTTCCCCGTGAGGGTCTTCACAAAGATCTGCAT 384308 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496044597696800