Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ananas_20comosus_20[refseq_20GCF_5F001540865.1_202016-03-14] 3,129 sequences; 382,055,938 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq5 91.5 2e-13 seq2 87.8 3e-12 >seq5 Length=15024279 Score = 91.5 bits (100), Expect = 2e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 80334 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATT 80393 ||| || ||||| |||| || || ||||| || || ||||| || |||| | || Sbjct 11649133 AGTGCCAGCATTGAATAGTGTTGGGGAAGCATGAGTGAACCAACGTTGGGACATCAAATG 11649074 Query 80394 GTACGTCTCAATAGCTGATTCTATATCCCATTGATGAATTCCTACCGCGACACGCATTAA 80453 |||||| ||| | || || ||||| || || ||||| || || || | ||||| Sbjct 11649073 GTACGTTCTGATAACAGACTCGATATCATCTTTGTGGATTCCAACAGCAACTCTCATTAG 11649014 Query 80454 CATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGATTTTTCCAA 80513 ||||||||| || ||||| || | ||| | | |||||| | || ||| | || | Sbjct 11649013 CATGTGCTGTGGCCTTTCTACTACCTTTCCAGAAACTTTCAAGAGATAGGATCTCTCAAG 11648954 Query 80514 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 80561 ||| || ||||||||||||| || ||||||| || ||||| || Sbjct 11648953 AGTCTTGAAACCAAAATAGTCATAGTCGAAGTCTCTGTCATAAATTAT 11648906 Score = 87.8 bits (96), Expect = 3e-12 Identities = 152/221 (69%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 80095 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 80154 || || ||||| | || | ||| || | |||| | |||| || ||| |||| ||| ||| Sbjct 11649874 CCCCCTTGATCAACATAACGAGCAGTATCATTAAACACTCGCAGCATAGGAACAATCCCA 11649815 Query 80155 TTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGAT 80214 || || || ||||| ||||| || || || ||| | |||||||| || ||| || Sbjct 11649814 TTAGAAGTCCCATTTGTCCCACGAATGTAACTCCCAGTTGCACGAATGTTGTGAATAGAA 11649755 Query 80215 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATG 80274 | ||| ||||| ||||| ||| || | || || || | |||||||| || Sbjct 11649754 ACACCAATTCCTCCTGCGGATTTGCTTATGACAGCACACTCCTTCAGAGTATCATAAATT 11649695 Query 80275 CCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCT 80315 ||||| || ||||| || ||||| | ||||||||||| Sbjct 11649694 CCCTCAATACTATCCTCTTTCATGCAGACAAGAAAACAGCT 11649654 >seq2 Length=17334668 Score = 87.8 bits (96), Expect = 3e-12 Identities = 115/156 (74%), Gaps = 5/156 (3%) Strand=Plus/Minus Query 49960 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 50019 || ||||| |||||||| || |||||||| | || || |||||||| || ||||| Sbjct 14397015 CAAGCGAAGTCGCAGTGGAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGC 14396956 Query 50020 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGACCCAGAAAAGAA 50078 |||||||| ||||||||||| || ||||| || |||| | || | || || || ||||| Sbjct 14396955 CCGGGCATGAGGCCACGCTTCTTGAGCCAGAAGATGG-CTCAGCAGGAGCCGGAGAAGAA 14396897 Query 50079 GATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTC 50114 | || || || ||| ||||| || || | ||| Sbjct 14396896 G---CCCTCGACGCAGGCGAAGGCGACGAGGCGCTC 14396864 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718240706711560