Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ananas_20comosus_20[refseq_20GCF_5F001540865.1_202016-03-14] 3,129 sequences; 382,055,938 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq3 86.0 6e-12 >seq3 Length=16781886 Score = 86.0 bits (94), Expect = 6e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 143047 || || || ||||| |||||||| || | ||||| ||| ||||||||||||||| Sbjct 16131224 GTTGACTCCTTTTGGATGTTGTACTCTGAGAGTGTGCGGCCGTCCTCGAGTTGTTTACCA 16131165 Query 143048 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 143107 ||| |||| || | ||||| || ||||| ||||| || ||||| || || || Sbjct 16131164 GCAAAGATAAGCCTCTGCTGGTCCGGAGGAATGCCCTCCTTGTCCTGGATCTTCGACTTC 16131105 Query 143108 AGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 143167 | | ||| | ||||| | | || || || | ||| | ||||||||||| | || Sbjct 16131104 ACATTTTCAATTGTGTCGGAGCTCTCAACCTCCAAAGTGATGGTCTTGCCGGTGAGAGTC 16131045 Query 143168 TTTACGAATATTTGCAT 143184 || ||||| || ||||| Sbjct 16131044 TTCACGAAGATCTGCAT 16131028 Score = 86.0 bits (94), Expect = 6e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 143047 || || || ||||| |||||||| || | ||||| ||| ||||||||||||||| Sbjct 16199028 GTTGACTCCTTTTGGATGTTGTACTCTGAGAGTGTGCGGCCGTCCTCGAGTTGTTTACCA 16198969 Query 143048 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 143107 ||| |||| || | ||||| || ||||| ||||| || ||||| || || || Sbjct 16198968 GCAAAGATAAGCCTCTGCTGGTCCGGAGGAATGCCCTCCTTGTCCTGGATCTTCGACTTC 16198909 Query 143108 AGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 143167 | | ||| | ||||| | | || || || | ||| | ||||||||||| | || Sbjct 16198908 ACATTTTCAATTGTGTCGGAGCTCTCAACCTCCAAAGTGATGGTCTTGCCGGTGAGAGTC 16198849 Query 143168 TTTACGAATATTTGCAT 143184 || ||||| || ||||| Sbjct 16198848 TTCACGAAGATCTGCAT 16198832 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 506994569399280