Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ananas_20comosus_20[refseq_20GCF_5F001540865.1_202016-03-14] 3,129 sequences; 382,055,938 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq21 149 9e-31 seq433 141 1e-28 seq2 100 4e-16 seq336 93.3 6e-14 seq300 93.3 6e-14 seq13 87.8 3e-12 seq3 84.2 3e-11 >seq21 Length=10645290 Score = 149 bits (164), Expect = 9e-31 Identities = 392/584 (67%), Gaps = 12/584 (2%) Strand=Plus/Plus Query 124996 TGTTTCCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTT 125055 ||||||| ||| ||| | | ||| ||||| | ||||| ||||| ||| || || | Sbjct 998887 TGTTTCCGATCCGGTTCCCGGGCATCTGGGAGTTCTACAAGAAGGCCGTGGCGTCGTTCT 998946 Query 125056 GGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGAGA-CTCGTTTGACT 125114 |||| | ||| ||||| || || ||| ||||| | |||||| | || | | Sbjct 998947 GGACCGCCGAGGAGGTGGACCTCTCCGGCGACCTCCGGCACTGGGAGCTCGCGCTCTCCG 999006 Query 125115 GAAACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATC 125174 | || || || ||| | || ||| | | |||||||| |||| |||||| || ||| Sbjct 999007 GCGAC-GACCGGCGGTTCGTCTCCCACGTGCTCGCCTTCTTCGCCGCCTCCGACGGCATC 999065 Query 125175 GTCAACGACAATCTGTTGACACGATTC-TCTCAAGAGTTGACCAT-TC-CAGAGGTGTCG 125231 ||| ||| || || | || ||| | || ||| | ||| || | |||| || Sbjct 999066 GTCCTCGAGAACCTCGCCTCCCGCTTCATGTCC-GAGGT--CCAGGTCGCCGAGGCC-CG 999121 Query 125232 TGCTTT-TACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACT 125290 || || ||||| ||||| ||| ||| |||||| | |||||||| |||||||| || Sbjct 999122 CGCCTTCTACGGCTTCCAGATCGCGATCGAGAACATCCACTCGGAGATGTACTCCCTCCT 999181 Query 125291 GATTGACATGTACATTCGCGATCCGCAACGTAAACACATGCTCTTTAACGCAATCGACAC 125350 | || | ||||| ||||| || | || || ||||| ||| ||||||| Sbjct 999182 CCTCGAGACCTACATCCGCGACCCCCTCGAGAAGGACCGCCTCTTCCGCGCCGTCGACAC 999241 Query 125351 GGTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTC 125410 || || | | ||||| |||| | | || |||||| | | | | | Sbjct 999242 CGTCCCCTGCGTCGCCCGCAAGGCCGCGTGGGCGCTGCGCTGGATCCAGTCCCCCGACGC 999301 Query 125411 TTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGG-TA 125469 || | |||||| | || || || |||||| ||| |||||| ||||||| || || | Sbjct 999302 CTCCTTCGCCGAGCGCCTCGTCGCCTTCGCCTGCGTCGAGGGCGTCTTCTTCTCCGGCTC 999361 Query 125470 GTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTA 125529 || |||| ||||||| ||||||||||||||||| ||||||||||| || || | | Sbjct 999362 CTTCTGCG-CCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCCGGCCTCACCTTCTCCA 999420 Query 125530 ACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCC 125573 ||||| | || || || ||||||||||| ||||| ||||| ||| Sbjct 999421 ACGAGCTCATCTCCCGCGACGAGGGCCTCCACTGCGACTTCGCC 999464 >seq433 Length=30188 Score = 141 bits (156), Expect = 1e-28 Identities = 388/583 (67%), Gaps = 10/583 (2%) Strand=Plus/Plus Query 124996 TGTTTCCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTT 125055 |||| || ||| ||| | | ||| ||||| | ||||| ||||| ||| || || | Sbjct 23666 TGTTCCCGATCCGGTTCCCGGGCATCTGGGAGTTCTACAAGAAGGCCGTGGCGTCGTTCT 23725 Query 125056 GGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGAGACT-CGTTTGACT 125114 |||| | ||| ||||| || || ||| ||||| | |||||| | || | | Sbjct 23726 GGACCGCCGAGGAGGTGGACCTCTCCGGCGACCTCCGGCACTGGGAGCTTGCGCTCTCCG 23785 Query 125115 GAAACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATC 125174 | || || || ||| | || ||| | | |||||||| |||| |||||| || ||| Sbjct 23786 GCGAC-GACCGGCGGTTCGTCTCCCACGTGCTCGCCTTCTTCGCCGCCTCCGACGGCATC 23844 Query 125175 GTCAACGACAATCTGTTGACACGATTCTCTCAAGAGTTGACCAT-TC-CAGAGGTGTCGT 125232 ||| ||| || || | || ||| ||| | ||| || | |||| || Sbjct 23845 GTCCTCGAGAACCTCGCCTCCCGCTTCATGGCCGAGGT--CCAGGTCGCCGAGGCC-CGC 23901 Query 125233 GCTTT-TACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTG 125291 || || ||||| ||||| ||| ||| |||||| | |||||||| |||||||| || Sbjct 23902 GCCTTCTACGGCTTCCAGATCGCGATCGAGAACATCCACTCGGAGATGTACTCCCTCCTC 23961 Query 125292 ATTGACATGTACATTCGCGATCCGCAACGTAAACACATGCTCTTTAACGCAATCGACACG 125351 | || | ||||| ||||| || | || || ||||| ||| ||||||| Sbjct 23962 CTCGAGACCTACATCCGCGACCCCCTCGAGAAGGACCGCCTCTTCCGCGCCGTCGACACC 24021 Query 125352 GTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTCT 125411 || || | | ||||| |||| | | || |||||| | | | | | Sbjct 24022 GTCCCCTGCGTCGCCCGCAAGGCCGCGTGGGCGCTGCGCTGGATCCAGTCCCCCGACGCC 24081 Query 125412 TCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGG-TAG 125470 || | |||||| | || || || |||||| ||| |||||| ||||||| || || | Sbjct 24082 TCCTTCGCCGAGCGCCTCGTCGCCTTCGCCTGCGTCGAGGGCGTCTTCTTCTCCGGCTCC 24141 Query 125471 TTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAA 125530 || |||| ||||||| ||||||||||||||||| ||||||||||| || || | || Sbjct 24142 TTCTGCG-CCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCCGGCCTCACCTTCTCCAA 24200 Query 125531 CGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCC 125573 |||| | || || || ||||||||||| ||||| ||||| ||| Sbjct 24201 CGAGCTCATCTCCCGCGACGAGGGCCTCCACTGCGACTTCGCC 24243 >seq2 Length=17334668 Score = 100 bits (110), Expect = 4e-16 Identities = 117/156 (75%), Gaps = 3/156 (2%) Strand=Plus/Plus Query 125417 CGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGC 125476 |||||| | || || || |||||| ||| |||||| |||||| ||| | | || Sbjct 14396860 CGCCGAGCGCCTCGTCGCCTTCGCCTGCGTCGAGGGCTTCTTCTC--CGGCTCCTGCTGA 14396917 Query 125477 GGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTT 125536 | ||||||| |||||||||||||| || ||||||||||| || || | |||||| | Sbjct 14396918 G-CCATCTTCTGGCTCAAGAAGCGTGGCCTCATGCCCGGGCTCACCTTCTCCAACGAGCT 14396976 Query 125537 TATATCTCGAGACGAGGGCCTACACTGTGACTTTGC 125572 || || || ||||||||||| ||||| ||||| || Sbjct 14396977 CATCTCCCGCGACGAGGGCCTCCACTGCGACTTCGC 14397012 >seq336 Length=33712 Score = 93.3 bits (102), Expect = 6e-14 Identities = 116/157 (74%), Gaps = 3/157 (2%) Strand=Plus/Plus Query 125417 CGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGC 125476 |||||| | | || || |||||| ||| |||||| |||||| ||| | | || Sbjct 18953 CGCCGAGCGCTTCGTCGCCTTCGCCTGCGTCGAGGGCTTCTTCTC--CGGCTCCTGCTGA 19010 Query 125477 GGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTT 125536 | ||||||| |||||||||||||| || ||||||||||| || || | ||| || | Sbjct 19011 G-CCATCTTCTGGCTCAAGAAGCGTGGCCTCATGCCCGGGCTCACCTTCTCCAACAAGCT 19069 Query 125537 TATATCTCGAGACGAGGGCCTACACTGTGACTTTGCC 125573 || || || ||||||||||| ||||| ||||| ||| Sbjct 19070 CATCTCCCGCGACGAGGGCCTCCACTGCGACTTCGCC 19106 >seq300 Length=35074 Score = 93.3 bits (102), Expect = 6e-14 Identities = 116/157 (74%), Gaps = 3/157 (2%) Strand=Plus/Minus Query 125417 CGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGC 125476 |||||| | || || || |||||| ||| |||||| |||||| ||| | | || Sbjct 28878 CGCCGAGCGCCTCGTCGCCTTCGCCTACGTCGAGGGCTTCTTCTC--CGGCTCCTGCTGA 28821 Query 125477 GGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTT 125536 | ||||||| |||||||||||||| || ||||||||||| || || | ||| || | Sbjct 28820 G-CCATCTTCTGGCTCAAGAAGCGTGGCCTCATGCCCGGGCTCACCTTCTCCAACAAGCT 28762 Query 125537 TATATCTCGAGACGAGGGCCTACACTGTGACTTTGCC 125573 || || || || |||||||| ||||| ||||| ||| Sbjct 28761 CATCTCCCGCGATGAGGGCCTCCACTGCGACTTCGCC 28725 >seq13 Length=11759267 Score = 87.8 bits (96), Expect = 3e-12 Identities = 109/147 (74%), Gaps = 3/147 (2%) Strand=Plus/Plus Query 125417 CGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGC 125476 |||||| | || || || |||||| || |||||| |||||| ||| | | || Sbjct 1164907 CGCCGAGCGCCTCGTCGCCTTCGCCTGTGTCGAGGGCTTCTTCTC--CGGCTCCTGCTGA 1164964 Query 125477 GGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTT 125536 | ||||||| |||||||||||||| || ||||||||||| || || | ||| || | Sbjct 1164965 G-CCATCTTCTGGCTCAAGAAGCGTGGCCTCATGCCCGGGCTCACCTTCTCCAACAAGCT 1165023 Query 125537 TATATCTCGAGACGAGGGCCTACACTG 125563 ||| || || ||||||||||| ||||| Sbjct 1165024 TATCTCCCGCGACGAGGGCCTCCACTG 1165050 Score = 87.8 bits (96), Expect = 3e-12 Identities = 115/157 (73%), Gaps = 3/157 (2%) Strand=Plus/Minus Query 125417 CGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGC 125476 |||||| | || || || |||||| ||| |||||| |||||| ||| | | || Sbjct 9967899 CGCCGAGCGCCTCGTCGCCTTCGCCTGCGTCGAGGGCTTCTTCTC--CGGCTCCTGCTGA 9967842 Query 125477 GGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTT 125536 | ||||||| |||||||||||||| || ||||||||||| || || | |||||| | Sbjct 9967841 G-CCATCTTCTGGCTCAAGAAGCGTGGCCTCATGCCCGGGCTCACCTTCTCCAACGAGCT 9967783 Query 125537 TATATCTCGAGACGAGGGCCTACACTGTGACTTTGCC 125573 | || | ||| ||||||| ||||| ||||| ||| Sbjct 9967782 CGTCTCCCACGACAAGGGCCTCCACTGCGACTTCGCC 9967746 >seq3 Length=16781886 Score = 84.2 bits (92), Expect = 3e-11 Identities = 108/147 (73%), Gaps = 3/147 (2%) Strand=Plus/Minus Query 125417 CGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGC 125476 |||||| | || || || |||||| || || ||| |||||| ||| | | || Sbjct 8692871 CGCCGAGCGCCTCGTCGCCTTCGCCTGTGTCGACGGCTTCTTCTC--CGGCTCCTGCTGA 8692814 Query 125477 GGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTT 125536 | ||||||| |||||||||||||| || ||||||||||| || || | ||| || | Sbjct 8692813 G-CCATCTTCTGGCTCAAGAAGCGTGGCCTCATGCCCGGGCTCACCTTCTCCAACAAGCT 8692755 Query 125537 TATATCTCGAGACGAGGGCCTACACTG 125563 ||| || || ||||||||||| ||||| Sbjct 8692754 TATCTCCCGCGACGAGGGCCTCCACTG 8692728 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741030215322040