Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ananas_20comosus_20[refseq_20GCF_5F001540865.1_202016-03-14] 3,129 sequences; 382,055,938 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq8 87.8 1e-12 seq3 86.0 5e-12 >seq8 Length=13970067 Score = 87.8 bits (96), Expect = 1e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220 ||||||||||| || || || ||||||||||| || | | | || || | || Sbjct 10823292 TGAAGGGTGGATTCCTTCTGGATGTTGTAATCCGCCAGGGTGCGGCCATCCTCAAGCTGC 10823351 Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTG 15280 || |||||| | |||||||| || ||||| ||||| || || ||||| ||| || Sbjct 10823352 TTCCCAGCGAAGATCAAACGCTGCTGGTCCGGCGGAATCCCCTCCTTGTCCTGAATCTTA 10823411 Query 15281 CTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTC 15340 ||| ||| | || || |||||| | || || || ||||| || || || || || Sbjct 10823412 GCCTTCACATTATCAATAGTATCGGAGCTCTCAACCTCCAAGGTGATCGTCTTGCCGGTG 10823471 Query 15341 AGAGTTTTTACAAAAATTTGCAT 15363 || || || ||||| |||||||| Sbjct 10823472 AGGGTCTTGACAAAGATTTGCAT 10823494 >seq3 Length=16781886 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 15154 AACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTC 15213 ||| |||||||||||||| || ||||| |||||||| || || | | | || || Sbjct 16131921 AACCAAATGAAGGGTGGACTCCTTTTGGATGTTGTACTCTGATAAGGTCCGGCCATCCTC 16131862 Query 15214 TAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACA 15273 ||||| || ||||| |||| | || || || ||| | |||||||||||||| Sbjct 16131861 CAATTGCTTCCCAGCAAATATGAGCCGCTGCTGATCGGGAAGGATTCCTTCTTTGTCTTG 16131802 Query 15274 AATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333 |||||| | ||| | |||| || || || | || || || | || ||||| || Sbjct 16131801 AATTTTACCCTTCAGGTTTTCAATTGTGTCAGAGCTCTCAACCTCGAGAGTGATGGTCTT 16131742 Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || || || || || |||||||| ||||| Sbjct 16131741 TCCAGTGAGGGTCTTCACAAAAATCTGCAT 16131712 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 15154 AACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTC 15213 ||| |||||||||||||| || ||||| |||||||| || || | | | || || Sbjct 16199725 AACCAAATGAAGGGTGGACTCCTTTTGGATGTTGTACTCTGATAAGGTCCGGCCATCCTC 16199666 Query 15214 TAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACA 15273 ||||| || ||||| |||| | || || || ||| | |||||||||||||| Sbjct 16199665 CAATTGCTTCCCAGCAAATATGAGCCGCTGCTGATCGGGAAGGATTCCTTCTTTGTCTTG 16199606 Query 15274 AATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333 |||||| | ||| | |||| || || || | || || || | || ||||| || Sbjct 16199605 AATTTTACCCTTCAGGTTTTCAATTGTGTCAGAGCTCTCAACCTCGAGAGTGATGGTCTT 16199546 Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || || || || || |||||||| ||||| Sbjct 16199545 TCCAGTGAGGGTCTTCACAAAAATCTGCAT 16199516 Score = 82.4 bits (90), Expect = 6e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 15135 TGCCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGC 15194 |||||||||||| | || || | |||||||| || ||||| || | ||||| || Sbjct 16131484 TGCCACCTCTCAGACGTAGGACGAGGTGAAGGGTTGATTCTTTCTGAACATTGTAGTCCG 16131425 Query 15195 TTAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTG 15254 ||| | |||| || | ||||||||| || | || | | ||| || || | Sbjct 16131424 ACAGAGTGTGACCGTCCTCGAGTTGTTTGCCTGCAAAGATGAGCCTTTGCTGATCCGAGG 16131365 Query 15255 GAATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTA 15314 | || || || ||||| || ||| ||| || |||| || || ||| | || | Sbjct 16131364 GGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTTTCGATCGTGTCGGAGCTCTCAA 16131305 Query 15315 CATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 | || ||||| ||||| || || || ||||| |||||||| ||||||||| Sbjct 16131304 CCTCCAAGGTGATGGTCTTTCCGGTGAGAGTCTTTACAAAGATTTGCATA 16131255 Score = 82.4 bits (90), Expect = 6e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 15135 TGCCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGC 15194 |||||||||||| | || || | |||||||| || ||||| || | ||||| || Sbjct 16199288 TGCCACCTCTCAGACGTAGGACGAGGTGAAGGGTTGATTCTTTCTGAACATTGTAGTCTG 16199229 Query 15195 TTAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTG 15254 ||| | |||| || | ||||||||| || | || | | ||| || || | Sbjct 16199228 ACAGAGTGTGACCGTCCTCGAGTTGTTTGCCTGCAAAGATGAGCCTTTGCTGATCCGAGG 16199169 Query 15255 GAATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTA 15314 | || || || ||||| || ||| ||| || |||| || || ||| | || | Sbjct 16199168 GGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTTTCGATCGTGTCGGAGCTCTCAA 16199109 Query 15315 CATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 | || ||||| ||||| || || || ||||| |||||||| ||||||||| Sbjct 16199108 CCTCCAAGGTGATGGTCTTTCCGGTGAGAGTCTTTACAAAGATTTGCATA 16199059 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362165388409389