Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ananas_20comosus_20[refseq_20GCF_5F001540865.1_202016-03-14] 3,129 sequences; 382,055,938 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq3 82.4 5e-11 >seq3 Length=16781886 Score = 82.4 bits (90), Expect = 5e-11 Identities = 167/245 (68%), Gaps = 16/245 (7%) Strand=Plus/Minus Query 33135 AATCTTCA--CCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATT 33192 ||||| || || ||||| || || | || | ||| | || || ||||| || | ||| Sbjct 16131720 AATCTGCATCCCCCCTCTCAAACGGAGAACAAGATGGAGAGTTGATTCTTTCTGAACATT 16131661 Query 33193 GTAATCAGACAAATTGAGTTG----GTCATCCAATTGCTTTCCACTAAATATTAAACGTT 33248 |||||| |||| ||||| ||| || | |||||| ||| ||| || | | | Sbjct 16131660 GTAATCGGACA----GAGTTCTCCCGTCCTCGAGTTGCTTGCCAGCAAAGATGAGCCTCT 16131605 Query 33249 GCTGGTCCGTGGGTATGCCTTCTTTTTCGCTAATC---GCCTGTTTTACTGTTTGAATCG 33305 ||||||| | ||| |||||||| || || ||| |||| | || | | ||| | Sbjct 16131604 GCTGGTCTGAGGGGATGCCTTCCTTGTCCTGAATTTTTGCCT---TGACGTTCTCAATTG 16131548 Query 33306 TGTCGTTGGGTTGAACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTT 33365 | || || | ||| ||||||||||| || ||||| ||||| || || || ||||| | Sbjct 16131547 TATCAGAGGTCTCAACCTCCAGAGTTATGGTCTTTCCGGTAAGGGTCTTGACAAAAATCT 16131488 Query 33366 GCATG 33370 ||||| Sbjct 16131487 GCATG 16131483 Score = 82.4 bits (90), Expect = 5e-11 Identities = 167/245 (68%), Gaps = 16/245 (7%) Strand=Plus/Minus Query 33135 AATCTTCA--CCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATT 33192 ||||| || || ||||| || || | || | ||| | || || ||||| || | ||| Sbjct 16199524 AATCTGCATCCCCCCTCTCAAACGGAGAACAAGATGGAGAGTTGATTCTTTCTGAACATT 16199465 Query 33193 GTAATCAGACAAATTGAGTTG----GTCATCCAATTGCTTTCCACTAAATATTAAACGTT 33248 |||||| |||| ||||| ||| || | |||||| ||| ||| || | | | Sbjct 16199464 GTAATCGGACA----GAGTTCTCCCGTCCTCGAGTTGCTTGCCAGCAAAGATGAGCCTCT 16199409 Query 33249 GCTGGTCCGTGGGTATGCCTTCTTTTTCGCTAATC---GCCTGTTTTACTGTTTGAATCG 33305 ||||||| | ||| |||||||| || || ||| |||| | || | | ||| | Sbjct 16199408 GCTGGTCTGAGGGGATGCCTTCCTTGTCCTGAATTTTTGCCT---TGACGTTCTCAATTG 16199352 Query 33306 TGTCGTTGGGTTGAACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTT 33365 | || || | ||| ||||||||||| || ||||| ||||| || || || ||||| | Sbjct 16199351 TATCAGAGGTCTCAACCTCCAGAGTTATGGTCTTTCCGGTAAGGGTCTTGACAAAAATCT 16199292 Query 33366 GCATG 33370 ||||| Sbjct 16199291 GCATG 16199287 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 318765443515842