Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ananas_20comosus_20[refseq_20GCF_5F001540865.1_202016-03-14] 3,129 sequences; 382,055,938 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq3 158 3e-33 seq8 122 2e-22 seq10 116 9e-21 >seq3 Length=16781886 Score = 158 bits (174), Expect = 3e-33 Identities = 175/231 (76%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || |||||||| | | || || ||||| | || ||||||||||||| ||| || || Sbjct 16131713 ATCCCCCCTCTCAAACGGAGAACAAGATGGAGAGTTGATTCTTTCTGAACATTGTAATCG 16131654 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || |||||||| ||||| || ||||| || |||||||| || |||||||| || || | Sbjct 16131653 GACAGAGTTCTCCCGTCCTCGAGTTGCTTGCCAGCAAAGATGAGCCTCTGCTGGTCTGAG 16131594 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGT-TC 104508 || || ||||| || |||||||| ||||| || || || || | ||||| |||| || Sbjct 16131593 GGGATGCCTTCCTTGTCCTGAATTTTTGCCTTGACGTTCTCAATTGTATC-AGAGGTCTC 16131535 Query 104509 TACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||| || || || ||||| || ||||| || || ||||| |||||||| Sbjct 16131534 AACCTCCAGAGTTATGGTCTTTCCGGTAAGGGTCTTGACAAAAATCTGCAT 16131484 Score = 158 bits (174), Expect = 3e-33 Identities = 175/231 (76%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || |||||||| | | || || ||||| | || ||||||||||||| ||| || || Sbjct 16199517 ATCCCCCCTCTCAAACGGAGAACAAGATGGAGAGTTGATTCTTTCTGAACATTGTAATCG 16199458 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || |||||||| ||||| || ||||| || |||||||| || |||||||| || || | Sbjct 16199457 GACAGAGTTCTCCCGTCCTCGAGTTGCTTGCCAGCAAAGATGAGCCTCTGCTGGTCTGAG 16199398 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGT-TC 104508 || || ||||| || |||||||| ||||| || || || || | ||||| |||| || Sbjct 16199397 GGGATGCCTTCCTTGTCCTGAATTTTTGCCTTGACGTTCTCAATTGTATC-AGAGGTCTC 16199339 Query 104509 TACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||| || || || ||||| || ||||| || || ||||| |||||||| Sbjct 16199338 AACCTCCAGAGTTATGGTCTTTCCGGTAAGGGTCTTGACAAAAATCTGCAT 16199288 Score = 131 bits (144), Expect = 4e-25 Identities = 169/231 (73%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||| || | || || || || | || ||||||||||||| ||| ||||| Sbjct 16131485 ATGCCACCTCTCAGACGTAGGACGAGGTGAAGGGTTGATTCTTTCTGAACATTGTAGTCC 16131426 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || ||||| |||||| || |||||||| || ||||| || ||||| || ||||| | Sbjct 16131425 GACAGAGTGTGACCGTCCTCGAGTTGTTTGCCTGCAAAGATGAGCCTTTGCTGATCCGAG 16131366 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGT-TC 104508 || || || || || ||||| ||||| || || || ||||| | || ||| || | || Sbjct 16131365 GGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTTTCGATCGTGTCG-GAGCTCTC 16131307 Query 104509 TACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||| | || || ||||| || || || || |||||||| || ||||| Sbjct 16131306 AACCTCCAAGGTGATGGTCTTTCCGGTGAGAGTCTTTACAAAGATTTGCAT 16131256 Score = 131 bits (144), Expect = 4e-25 Identities = 169/231 (73%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||| || | || || || || | || ||||||||||||| ||| ||||| Sbjct 16199289 ATGCCACCTCTCAGACGTAGGACGAGGTGAAGGGTTGATTCTTTCTGAACATTGTAGTCT 16199230 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || ||||| |||||| || |||||||| || ||||| || ||||| || ||||| | Sbjct 16199229 GACAGAGTGTGACCGTCCTCGAGTTGTTTGCCTGCAAAGATGAGCCTTTGCTGATCCGAG 16199170 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGT-TC 104508 || || || || || ||||| ||||| || || || ||||| | || ||| || | || Sbjct 16199169 GGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTTTCGATCGTGTCG-GAGCTCTC 16199111 Query 104509 TACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||| | || || ||||| || || || || |||||||| || ||||| Sbjct 16199110 AACCTCCAAGGTGATGGTCTTTCCGGTGAGAGTCTTTACAAAGATTTGCAT 16199060 Score = 129 bits (142), Expect = 1e-24 Identities = 161/216 (75%), Gaps = 6/216 (3%) Strand=Plus/Minus Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407 || || ||||| | ||||| || ||||||| ||||||||| || | || | || || Sbjct 16132151 AGGACAAGATGAAGAGTAGACTCCTTCTGAACATTATAGTCCGACAAGGTGCGTCCATCC 16132092 Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGAT--CAGGAGGTATTCCTTCTTTAT 104465 | || ||||| |||||||| || |||||||| ||| |||| | || || || |||| Sbjct 16132091 TGCAGCTGTTTCCCAGCAAAGATGAGCCTCTGCTGAAACCAGGGGATA--CCCTCCTTAT 16132034 Query 104466 CCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGT-TCTACCTCTAGTGTAATA 104524 |||||||||| ||| |||||||||||||| || | || | || ||||| || || || Sbjct 16132033 CCTGAATCTTGTATTTGACATTTTCTACGGTGTC-CGAGCTCTCCACCTCGAGAGTGATG 16131975 Query 104525 GTCTTACCAGTAAGTGTTTTTACAAATATCTGCATT 104560 |||| ||||| | || || ||||| ||||||||| Sbjct 16131974 CTCTTCCCAGTTACAGTCTTCACAAAAATCTGCATT 16131939 Score = 129 bits (142), Expect = 1e-24 Identities = 161/216 (75%), Gaps = 6/216 (3%) Strand=Plus/Minus Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407 || || ||||| | ||||| || ||||||| ||||||||| || | || | || || Sbjct 16199955 AGGACAAGATGAAGAGTAGACTCCTTCTGAACATTATAGTCCGACAAGGTGCGTCCATCC 16199896 Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGAT--CAGGAGGTATTCCTTCTTTAT 104465 | || ||||| |||||||| || |||||||| ||| |||| | || || || |||| Sbjct 16199895 TGCAGCTGTTTCCCAGCAAAGATGAGCCTCTGCTGAAACCAGGGGATA--CCCTCCTTAT 16199838 Query 104466 CCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGT-TCTACCTCTAGTGTAATA 104524 |||||||||| ||| |||||||||||||| || | || | || ||||| || || || Sbjct 16199837 CCTGAATCTTGTATTTGACATTTTCTACGGTGTC-CGAGCTCTCCACCTCGAGAGTGATG 16199779 Query 104525 GTCTTACCAGTAAGTGTTTTTACAAATATCTGCATT 104560 |||| ||||| | || || ||||| ||||||||| Sbjct 16199778 CTCTTCCCAGTTACAGTCTTCACAAAAATCTGCATT 16199743 Score = 104 bits (114), Expect = 5e-17 Identities = 163/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 ||||| || | || | ||| || | ||| | || || || || || || || || || Sbjct 16131941 ATTCCACCGCGGAGGCGAAGAACCAAATGAAGGGTGGACTCCTTTTGGATGTTGTACTCT 16131882 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 |||| || | || || || | ||| || |||||||| || |||| ||| ||||| ||| Sbjct 16131881 GATAAGGTCCGGCCATCCTCCAATTGCTTCCCAGCAAATATGAGCCGCTGCTGATCGGGA 16131822 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGT-TC 104508 | ||||||||||| || ||||| || | || | ||||| | || || || | || Sbjct 16131821 AGGATTCCTTCTTTGTCTTGAATTTTACCCTTCAGGTTTTCAATTGTGTC-AGAGCTCTC 16131763 Query 104509 TACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||| || || || ||||| ||||| || || || ||||| |||||||| Sbjct 16131762 AACCTCGAGAGTGATGGTCTTTCCAGTGAGGGTCTTCACAAAAATCTGCAT 16131712 Score = 104 bits (114), Expect = 5e-17 Identities = 163/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 ||||| || | || | ||| || | ||| | || || || || || || || || || Sbjct 16199745 ATTCCACCGCGGAGGCGAAGAACCAAATGAAGGGTGGACTCCTTTTGGATGTTGTACTCT 16199686 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 |||| || | || || || | ||| || |||||||| || |||| ||| ||||| ||| Sbjct 16199685 GATAAGGTCCGGCCATCCTCCAATTGCTTCCCAGCAAATATGAGCCGCTGCTGATCGGGA 16199626 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGT-TC 104508 | ||||||||||| || ||||| || | || | ||||| | || || || | || Sbjct 16199625 AGGATTCCTTCTTTGTCTTGAATTTTACCCTTCAGGTTTTCAATTGTGTC-AGAGCTCTC 16199567 Query 104509 TACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||| || || || ||||| ||||| || || || ||||| |||||||| Sbjct 16199566 AACCTCGAGAGTGATGGTCTTTCCAGTGAGGGTCTTCACAAAAATCTGCAT 16199516 >seq8 Length=13970067 Score = 122 bits (134), Expect = 2e-22 Identities = 167/231 (72%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || ||||| || ||||| | || || || | || || |||||||| || || || || Sbjct 10823721 ATGCCCCCCCTCAGCCTCAACACGAGGTGGAGGGTGGACTCTTTCTGGATGTTGTAATCC 10823780 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 | || || | || || || || || || || || || || || | ||| ||||| || Sbjct 10823781 GCAAGTGTGCGGCCATCCTCGAGCTGCTTCCCGGCGAAGATCAGACGCTGCTGATCCGGG 10823840 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGT-TC 104508 || || || || |||||||||||||| || || ||||| || | ||| ||| || | || Sbjct 10823841 GGAATGCCCTCCTTATCCTGAATCTTGGCCTTGACATTATCGATGGTGTCG-GAGCTCTC 10823899 Query 104509 TACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||| || |||||||||||||| || || || || || || |||||||| Sbjct 10823900 CACCTCAAGGGTAATAGTCTTACCCGTGAGGGTCTTCACGAAAATCTGCAT 10823950 Score = 113 bits (124), Expect = 1e-19 Identities = 155/214 (72%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 ||| || || || | || || || || ||||| |||||||| | || || | || || Sbjct 10823510 AAGAACAAGGTGGAGGGTGGACTCCTTTTGAATGTTATAGTCGGCAAGGGTGCGGCCATC 10823569 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466 || || || || || || || || || | ||| || || ||||| || || || || || Sbjct 10823570 CTCAAGCTGCTTGCCCGCGAAGATGAGGCGCTGCTGGTCCGGAGGGATGCCCTCCTTGTC 10823629 Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAG-GTTCTACCTCTAGTGTAATAG 104525 ||||||||| ||||| || || || | ||| || | || ||| ||||| || ||||| | Sbjct 10823630 CTGAATCTTCGCTTTCACGTTATCAATGGTGTC-CGAGCTTTCAACCTCAAGGGTAATGG 10823688 Query 104526 TCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 |||| ||||| || || || ||||| |||||||| Sbjct 10823689 TCTTGCCAGTGAGGGTCTTCACAAAGATCTGCAT 10823722 Score = 84.2 bits (92), Expect = 5e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || ||||| ||||| || || || || | || || | || || || || || || ||| Sbjct 10823298 GTGGATTCCTTCTGGATGTTGTAATCCGCCAGGGTGCGGCCATCCTCAAGCTGCTTCCCA 10823357 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || || || | | ||| || || || || || || || || ||||||||||| || || Sbjct 10823358 GCGAAGATCAAACGCTGCTGGTCCGGCGGAATCCCCTCCTTGTCCTGAATCTTAGCCTTC 10823417 Query 104483 ACATTTTCTACGGTATCGCTAGGT-TCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGT 104541 ||||| || | |||||| || | || ||||| | || || ||||| || || || || Sbjct 10823418 ACATTATCAATAGTATCG-GAGCTCTCAACCTCCAAGGTGATCGTCTTGCCGGTGAGGGT 10823476 Query 104542 TTTTACAAATATCTGCAT 104559 || ||||| || ||||| Sbjct 10823477 CTTGACAAAGATTTGCAT 10823494 >seq10 Length=13112115 Score = 116 bits (128), Expect = 9e-21 Identities = 168/234 (72%), Gaps = 5/234 (2%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || || || || | || || || || | || || || ||||| | || |||||| Sbjct 3659275 ATGCCGCCCCTGAGGCGGAGGACGAGGTGGAGCGTCGACTCCTTCTGGACGTTGTAGTCA 3659334 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCT---CTGTTGATCA 104446 || | ||| | |||| || || ||||| ||| |||| || ||||| ||| ||||| Sbjct 3659335 GACAAAGTGCGCTCGTCATCGAGCTGTTTGCCACCAAAGATGAGCCTTTGCTGATGATCC 3659394 Query 104447 GGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGT 104506 | ||| || || || |||||||| ||||| || || ||||| | | ||| || || | Sbjct 3659395 GAAGGAATGCCCTCCTTATCCTGGATCTTGGCCTTAACATTGGCAATGGTGTCAG-AGTT 3659453 Query 104507 -TCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || ||||| || ||||||||||| ||||| || || || ||||| |||||||| Sbjct 3659454 GTCGACCTCAAGAGTAATAGTCTTGCCAGTGAGGGTCTTCACAAAGATCTGCAT 3659507 Score = 95.1 bits (104), Expect = 3e-14 Identities = 157/224 (70%), Gaps = 2/224 (1%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || |||| || | || || || || | ||||| || ||||| | ||| || || Sbjct 3658421 ATCCCGCCTCGGAGGCGGAGAACGAGGTGAAGGGTAGACTCCTTCTGCACATTGTAATCC 3658480 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 ||||| | | || || | || || |||||||| || ||||||||||| || | Sbjct 3658481 CTGAGAGTGCGATTATCCTCCAACTGCTTACCAGCAAAGATGAGCCTCTGTTGGTCGTGG 3658540 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGT-TC 104508 || || || || |||||||| ||||| || || |||||||| | || ||| || | || Sbjct 3658541 GGAATGCCCTCCTTATCCTGGATCTTAGCCTTCACATTTTCAATCGTGTCG-GAGCTCTC 3658599 Query 104509 TACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATA 104552 ||||| || ||||||||||| || || | || || ||| ||| Sbjct 3658600 AACCTCAAGAGTAATAGTCTTGCCTGTTGGAGTATTCACATATA 3658643 Score = 87.8 bits (96), Expect = 4e-12 Identities = 163/234 (70%), Gaps = 8/234 (3%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || || || || | || || || || | || || || ||||| | ||| || || Sbjct 3659506 ATGCCGCCCCTGAGACGGAGGACAAGGTGAAGCGTGGACTCCTTCTGTACATTGTAATCG 3659565 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCA-GG 104448 || || || | |||| |||||||| || || || | ||||| || |||| || Sbjct 3659566 GAAAGTGTGCGCTCGTCCCTGAGTTGTTTGCCTGCGAAGACAAGCCTTTGCTGATTGCGG 3659625 Query 104449 AGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAG-GTT 104507 ||| || || || || ||||| ||||| || || ||||| | | ||| || || ||| Sbjct 3659626 AGG-ATGCCCTCCTTGTCCTGGATCTTGGCCTTAACATTGGCAATGGTGTC---AGAGTT 3659681 Query 104508 CT--ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || ||||| || || || ||||| ||||| || || || |||||||||||||| Sbjct 3659682 CTCGACCTCGAGAGTGATGGTCTTGCCAGTGAGAGTCTTCACAAATATCTGCAT 3659735 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151352240078332