Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ananas_20comosus_20[refseq_20GCF_5F001540865.1_202016-03-14] 3,129 sequences; 382,055,938 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq8 102 7e-17 seq7 89.7 4e-13 seq4 82.4 6e-11 >seq8 Length=13970067 Score = 102 bits (112), Expect = 7e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 48500 CCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCC 48559 || || | || ||| ||||| | || || ||| ||| || || ||||||||||| | | Sbjct 10823724 CCCCCCCTCAGCCTCAACACGAGGTGGAGGGTGGACTCTTTCTGGATGTTGTAATCCG-C 10823782 Query 48560 AATTGT-CGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618 || ||| || | ||||| |||||||| ||| || | || | ||||||||||||| || Sbjct 10823783 AAGTGTGCGGCCATCCTCGAGCTGCTTCCCGGCGAAGATCAGACGCTGCTGATCCGGGGG 10823842 Query 48619 CACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGT 48678 | | ||||| ||| ||| || ||||| | | ||||| |||| |||| Sbjct 10823843 AATGCCCTCCTTATCCTGAATCTTGGCCTTGACATTATCGATGGTGTCGGAGCTCTCCAC 10823902 Query 48679 CTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 ||| | || || || ||||| ||||| || ||||| ||||||||||| Sbjct 10823903 CTCAAGGGTAATAGTCTTACCCGTGAGGGTCTTCACGAAAATCTGCAT 10823950 Score = 91.5 bits (100), Expect = 1e-13 Identities = 156/222 (70%), Gaps = 6/222 (3%) Strand=Plus/Plus Query 48509 AACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGT-CG 48567 ||||| | ||| | || || ||| ||||| |||||||| || || || || || || Sbjct 10823961 AACCTCAGCACAAGGTGGAGGGTGGATTCCTTCTGAATGTTATAGTCTGC-AAGGGTGCG 10824019 Query 48568 CTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTC 48627 ||||||| |||||||| || | | || || |||||||| || || | | || Sbjct 10824020 GCCGTCCTCGAGCTGCTTGCCAGCAAAGATCAAGCGCTGCTGGTCGGGAGGGATGCCCTC 10824079 Query 48628 CTTGTCCATAATTTTCTGCTTGA--TAGACGCTATGGTATCGGTAGACTCCGTCTCGACT 48685 ||||||| || || ||||| | | || ||||| |||| |||| ||| | Sbjct 10824080 CTTGTCCTGGATCTTGGCCTTGACGTTGTCG--ATGGTGTCGGAGCTCTCCACCTCAAGG 10824137 Query 48686 GTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCATC 48727 || ||||| || |||||||| ||||||||||||||||||||| Sbjct 10824138 GTGATGGTCTTGCCGGTGAGGGTTTTCACAAAAATCTGCATC 10824179 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGC 48583 ||||| ||| ||||| || ||||||||||| |||| || | ||||| |||||| Sbjct 10823292 TGAAGGGTGGATTCCTTCTGGATGTTGTAATCCGCCAGGGTGCGGCCATCCTCAAGCTGC 10823351 Query 48584 TTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTC 48643 || || || | || ||||||||||| ||| ||| | | ||||||||| ||| || Sbjct 10823352 TTCCCAGCGAAGATCAAACGCTGCTGGTCCGGCGGAATCCCCTCCTTGTCCTGAATCTTA 10823411 Query 48644 TGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTG 48703 ||| | | | || ||||||| ||| ||| | || || || || |||||| Sbjct 10823412 GCCTTCACATTATCAATAGTATCGGAGCTCTCAACCTCCAAGGTGATCGTCTTGCCGGTG 10823471 Query 48704 AGAGTTTTCACAAAAATCTGCATC 48727 || || || ||||| || |||||| Sbjct 10823472 AGGGTCTTGACAAAGATTTGCATC 10823495 >seq7 Length=14728688 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/195 (71%), Gaps = 4/195 (2%) Strand=Plus/Minus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTA 48594 |||||| || |||||||| || || | ||| ||||||| |||||||| ||| || | Sbjct 13849390 CTCCTTCTGGATGTTGTAGTCGGCTAGGGTTCGGCCGTCCTCGAGCTGCTTCCCGGCGAA 13849331 Query 48595 AATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGA--TA 48652 || | |||||||||||| || | | ||||||||| || || ||| | | Sbjct 13849330 GATGAGCCGCTGCTGATCCGGGGGAATCCCCTCCTTGTCCTGGATCTTGGCCTTAACGTT 13849271 Query 48653 GACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTC 48712 | || ||||| |||| |||| ||||| || || || || |||||||| |||||| Sbjct 13849270 GTCG--ATGGTGTCGGAGCTCTCCACCTCGAGGGTGATCGTCTTTCCGGTGAGGGTTTTC 13849213 Query 48713 ACAAAAATCTGCATC 48727 || || ||||||||| Sbjct 13849212 ACGAAGATCTGCATC 13849198 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 48523 ATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTG 48582 |||||| ||| |||||||| |||||||| || || | || ||||||| ||||| Sbjct 13849630 ATGAAGGGTGGATTCCTTTTGGATGTTGTAGTCGGCGAGGGTGCGGCCGTCCTCGAGCTG 13849571 Query 48583 CTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTT 48642 ||| ||| || | || | ||||||||||||| || | | ||||||||| || || Sbjct 13849570 CTTCCCGGCGAAGATGAGACGCTGCTGATCCGGGGGAATCCCCTCCTTGTCCTGGATCTT 13849511 Query 48643 CTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGT 48702 ||| | | | ||||| |||| |||| ||| | || || || || || || Sbjct 13849510 GGCCTTCACATTGTCGATGGTGTCGGAGCTCTCCACCTCAAGGGTGATCGTCTTCCCCGT 13849451 Query 48703 GAGAGTTTTCACAAAAATCTGCAT 48726 || |||||||| || |||||||| Sbjct 13849450 TAGGGTTTTCACGAAGATCTGCAT 13849427 >seq4 Length=15584765 Score = 82.4 bits (90), Expect = 6e-11 Identities = 134/193 (69%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTA 48594 |||||| || |||||||| || || | |||| | ||||| |||||||| ||| || | Sbjct 384499 CTCCTTCTGGATGTTGTAGTCGGCTAGGGTTCGCCCATCCTCGAGCTGCTTCCCGGCGAA 384440 Query 48595 AATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGA 48654 || | ||||||||||| || | | |||||||||| || || ||| | | Sbjct 384439 GATGAGGCGCTGCTGATCGGGGGGGATCCCTTCCTTGTCCTGGATCTTTGCCTTCACATT 384380 Query 48655 CGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCAC 48714 | || || || | |||||| ||| | || || || || || ||||| || ||||| Sbjct 384379 GTCGATCGTGTCCGAGGACTCCACCTCAAGGGTGATTGTCTTCCCCGTGAGGGTCTTCAC 384320 Query 48715 AAAAATCTGCATC 48727 ||| ||||||||| Sbjct 384319 AAAGATCTGCATC 384307 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421235135717129