Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ananas_20comosus_20[refseq_20GCF_5F001540865.1_202016-03-14]
3,129 sequences; 382,055,938 total letters
Query= NC_005839.2
Length=131680
Score E
Sequences producing significant alignments: (Bits) Value
seq8 102 7e-17
seq7 89.7 4e-13
seq4 82.4 6e-11
>seq8
Length=13970067
Score = 102 bits (112), Expect = 7e-17
Identities = 161/228 (71%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 48500 CCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCC 48559
|| || | || ||| ||||| | || || ||| ||| || || ||||||||||| | |
Sbjct 10823724 CCCCCCCTCAGCCTCAACACGAGGTGGAGGGTGGACTCTTTCTGGATGTTGTAATCCG-C 10823782
Query 48560 AATTGT-CGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618
|| ||| || | ||||| |||||||| ||| || | || | ||||||||||||| ||
Sbjct 10823783 AAGTGTGCGGCCATCCTCGAGCTGCTTCCCGGCGAAGATCAGACGCTGCTGATCCGGGGG 10823842
Query 48619 CACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGT 48678
| | ||||| ||| ||| || ||||| | | ||||| |||| ||||
Sbjct 10823843 AATGCCCTCCTTATCCTGAATCTTGGCCTTGACATTATCGATGGTGTCGGAGCTCTCCAC 10823902
Query 48679 CTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726
||| | || || || ||||| ||||| || ||||| |||||||||||
Sbjct 10823903 CTCAAGGGTAATAGTCTTACCCGTGAGGGTCTTCACGAAAATCTGCAT 10823950
Score = 91.5 bits (100), Expect = 1e-13
Identities = 156/222 (70%), Gaps = 6/222 (3%)
Strand=Plus/Plus
Query 48509 AACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGT-CG 48567
||||| | ||| | || || ||| ||||| |||||||| || || || || || ||
Sbjct 10823961 AACCTCAGCACAAGGTGGAGGGTGGATTCCTTCTGAATGTTATAGTCTGC-AAGGGTGCG 10824019
Query 48568 CTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTC 48627
||||||| |||||||| || | | || || |||||||| || || | | ||
Sbjct 10824020 GCCGTCCTCGAGCTGCTTGCCAGCAAAGATCAAGCGCTGCTGGTCGGGAGGGATGCCCTC 10824079
Query 48628 CTTGTCCATAATTTTCTGCTTGA--TAGACGCTATGGTATCGGTAGACTCCGTCTCGACT 48685
||||||| || || ||||| | | || ||||| |||| |||| ||| |
Sbjct 10824080 CTTGTCCTGGATCTTGGCCTTGACGTTGTCG--ATGGTGTCGGAGCTCTCCACCTCAAGG 10824137
Query 48686 GTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCATC 48727
|| ||||| || |||||||| |||||||||||||||||||||
Sbjct 10824138 GTGATGGTCTTGCCGGTGAGGGTTTTCACAAAAATCTGCATC 10824179
Score = 84.2 bits (92), Expect = 2e-11
Identities = 141/204 (69%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGC 48583
||||| ||| ||||| || ||||||||||| |||| || | ||||| ||||||
Sbjct 10823292 TGAAGGGTGGATTCCTTCTGGATGTTGTAATCCGCCAGGGTGCGGCCATCCTCAAGCTGC 10823351
Query 48584 TTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTC 48643
|| || || | || ||||||||||| ||| ||| | | ||||||||| ||| ||
Sbjct 10823352 TTCCCAGCGAAGATCAAACGCTGCTGGTCCGGCGGAATCCCCTCCTTGTCCTGAATCTTA 10823411
Query 48644 TGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTG 48703
||| | | | || ||||||| ||| ||| | || || || || ||||||
Sbjct 10823412 GCCTTCACATTATCAATAGTATCGGAGCTCTCAACCTCCAAGGTGATCGTCTTGCCGGTG 10823471
Query 48704 AGAGTTTTCACAAAAATCTGCATC 48727
|| || || ||||| || ||||||
Sbjct 10823472 AGGGTCTTGACAAAGATTTGCATC 10823495
>seq7
Length=14728688
Score = 89.7 bits (98), Expect = 4e-13
Identities = 138/195 (71%), Gaps = 4/195 (2%)
Strand=Plus/Minus
Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTA 48594
|||||| || |||||||| || || | ||| ||||||| |||||||| ||| || |
Sbjct 13849390 CTCCTTCTGGATGTTGTAGTCGGCTAGGGTTCGGCCGTCCTCGAGCTGCTTCCCGGCGAA 13849331
Query 48595 AATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGA--TA 48652
|| | |||||||||||| || | | ||||||||| || || ||| | |
Sbjct 13849330 GATGAGCCGCTGCTGATCCGGGGGAATCCCCTCCTTGTCCTGGATCTTGGCCTTAACGTT 13849271
Query 48653 GACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTC 48712
| || ||||| |||| |||| ||||| || || || || |||||||| ||||||
Sbjct 13849270 GTCG--ATGGTGTCGGAGCTCTCCACCTCGAGGGTGATCGTCTTTCCGGTGAGGGTTTTC 13849213
Query 48713 ACAAAAATCTGCATC 48727
|| || |||||||||
Sbjct 13849212 ACGAAGATCTGCATC 13849198
Score = 84.2 bits (92), Expect = 2e-11
Identities = 141/204 (69%), Gaps = 0/204 (0%)
Strand=Plus/Minus
Query 48523 ATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTG 48582
|||||| ||| |||||||| |||||||| || || | || ||||||| |||||
Sbjct 13849630 ATGAAGGGTGGATTCCTTTTGGATGTTGTAGTCGGCGAGGGTGCGGCCGTCCTCGAGCTG 13849571
Query 48583 CTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTT 48642
||| ||| || | || | ||||||||||||| || | | ||||||||| || ||
Sbjct 13849570 CTTCCCGGCGAAGATGAGACGCTGCTGATCCGGGGGAATCCCCTCCTTGTCCTGGATCTT 13849511
Query 48643 CTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGT 48702
||| | | | ||||| |||| |||| ||| | || || || || || ||
Sbjct 13849510 GGCCTTCACATTGTCGATGGTGTCGGAGCTCTCCACCTCAAGGGTGATCGTCTTCCCCGT 13849451
Query 48703 GAGAGTTTTCACAAAAATCTGCAT 48726
|| |||||||| || ||||||||
Sbjct 13849450 TAGGGTTTTCACGAAGATCTGCAT 13849427
>seq4
Length=15584765
Score = 82.4 bits (90), Expect = 6e-11
Identities = 134/193 (69%), Gaps = 0/193 (0%)
Strand=Plus/Minus
Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTA 48594
|||||| || |||||||| || || | |||| | ||||| |||||||| ||| || |
Sbjct 384499 CTCCTTCTGGATGTTGTAGTCGGCTAGGGTTCGCCCATCCTCGAGCTGCTTCCCGGCGAA 384440
Query 48595 AATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGA 48654
|| | ||||||||||| || | | |||||||||| || || ||| | |
Sbjct 384439 GATGAGGCGCTGCTGATCGGGGGGGATCCCTTCCTTGTCCTGGATCTTTGCCTTCACATT 384380
Query 48655 CGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCAC 48714
| || || || | |||||| ||| | || || || || || ||||| || |||||
Sbjct 384379 GTCGATCGTGTCCGAGGACTCCACCTCAAGGGTGATTGTCTTCCCCGTGAGGGTCTTCAC 384320
Query 48715 AAAAATCTGCATC 48727
||| |||||||||
Sbjct 384319 AAAGATCTGCATC 384307
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 421235135717129
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |