Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ananas_20comosus_20[refseq_20GCF_5F001540865.1_202016-03-14] 3,129 sequences; 382,055,938 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq1 118 6e-22 seq3 109 3e-19 seq21 107 1e-18 seq13 107 1e-18 seq12 107 1e-18 seq9 107 1e-18 seq18 105 3e-18 seq6 105 3e-18 seq8 102 4e-17 seq15 100 1e-16 seq5 96.9 2e-15 seq4 95.1 6e-15 >seq1 Length=24880688 Score = 118 bits (130), Expect = 6e-22 Identities = 78/87 (90%), Gaps = 0/87 (0%) Strand=Plus/Plus Query 11443 TAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGA 11502 |||||||| | |||||||||| | | |||||||| ||||||||||||||||||||||| Sbjct 876999 TAAAAAATAATTTTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGA 877058 Query 11503 CGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||| |||||||||||||||||||| Sbjct 877059 CGCTCTAACCAACTGAGCTAATGGGCC 877085 >seq3 Length=16781886 Score = 109 bits (120), Expect = 3e-19 Identities = 74/84 (88%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 11446 AAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGC 11505 ||||| || |||||||||| | | |||||||| |||||||||||||||||||||||||| Sbjct 1322145 AAAATAAACTTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGC 1322204 Query 11506 TCTRACCAACTGAGCTAATGGGCC 11529 || ||||||||||||||| |||| Sbjct 1322205 TCAAACCAACTGAGCTAATAGGCC 1322228 >seq21 Length=10645290 Score = 107 bits (118), Expect = 1e-18 Identities = 69/76 (91%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 11454 ATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCA 11513 ||||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||| Sbjct 10156082 ATTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCA 10156023 Query 11514 ACTGAGCTAATGGGCC 11529 ||||||||||| |||| Sbjct 10156022 ACTGAGCTAATAGGCC 10156007 Score = 107 bits (118), Expect = 1e-18 Identities = 83/99 (84%), Gaps = 3/99 (3%) Strand=Plus/Plus Query 11434 TAGAATTAATAAAAAATCAAATT---GGCCCATGAAAGGATCGAACCTTCGACCTTCGCG 11490 || ||| || ||||| | ||||| |||||||| | | |||||||| ||||||||||| Sbjct 10217910 TAAAATAAAGAAAAACTAAAATTATTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCG 10217969 Query 11491 TTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||| |||||||||||| ||||||||||||||| |||| Sbjct 10217970 TTATTTGCACGACGCTCTAACCAACTGAGCTAATAGGCC 10218008 >seq13 Length=11759267 Score = 107 bits (118), Expect = 1e-18 Identities = 76/87 (87%), Gaps = 2/87 (2%) Strand=Plus/Minus Query 11443 TAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGA 11502 |||| ||| | |||||||||| | | |||||||| ||||||||||||||||||||||| Sbjct 2159258 TAAATAAT--ATTTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGA 2159201 Query 11503 CGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||| ||||||||||||||| |||| Sbjct 2159200 CGCTCTAACCAACTGAGCTAATAGGCC 2159174 >seq12 Length=12612916 Score = 107 bits (118), Expect = 1e-18 Identities = 69/76 (91%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 11454 ATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCA 11513 ||||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||| Sbjct 880635 ATTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCA 880694 Query 11514 ACTGAGCTAATGGGCC 11529 ||||||||||| |||| Sbjct 880695 ACTGAGCTAATAGGCC 880710 >seq9 Length=13841557 Score = 107 bits (118), Expect = 1e-18 Identities = 70/78 (90%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 ||| ||||||||| | | |||||||| ||||||||||||||||||||||||||||| || Sbjct 12183488 AAAATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAAC 12183547 Query 11512 CAACTGAGCTAATGGGCC 11529 ||||||||||||| |||| Sbjct 12183548 CAACTGAGCTAATAGGCC 12183565 Score = 107 bits (118), Expect = 1e-18 Identities = 70/78 (90%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 ||| ||||||||| | | |||||||| ||||||||||||||||||||||||||||| || Sbjct 12184832 AAAATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAAC 12184891 Query 11512 CAACTGAGCTAATGGGCC 11529 ||||||||||||| |||| Sbjct 12184892 CAACTGAGCTAATAGGCC 12184909 >seq18 Length=10911977 Score = 105 bits (116), Expect = 3e-18 Identities = 68/75 (91%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 |||||||||| | | |||||||| ||||||||||||||||||||||||||||| ||||| Sbjct 9030529 TTGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAA 9030588 Query 11515 CTGAGCTAATGGGCC 11529 |||||||||| |||| Sbjct 9030589 CTGAGCTAATAGGCC 9030603 >seq6 Length=14747297 Score = 105 bits (116), Expect = 3e-18 Identities = 75/86 (87%), Gaps = 2/86 (2%) Strand=Plus/Minus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 ||| ||| || ||||||||| | | |||||||| |||||||||||||||||||||||| Sbjct 12365129 AAATAATTAA--TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGAC 12365072 Query 11504 GCTCTRACCAACTGAGCTAATGGGCC 11529 ||||| ||||||||||||||| |||| Sbjct 12365071 GCTCTAACCAACTGAGCTAATAGGCC 12365046 >seq8 Length=13970067 Score = 102 bits (112), Expect = 4e-17 Identities = 67/75 (89%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 |||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||| Sbjct 1718109 TTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAG 1718168 Query 11515 CTGAGCTAATGGGCC 11529 |||||||||| |||| Sbjct 1718169 CTGAGCTAATAGGCC 1718183 >seq15 Length=11365478 Score = 100 bits (110), Expect = 1e-16 Identities = 66/74 (89%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||| ||| | | |||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 2815212 TGGCCGATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 2815153 Query 11516 TGAGCTAATGGGCC 11529 ||||||||| |||| Sbjct 2815152 TGAGCTAATAGGCC 2815139 >seq5 Length=15024279 Score = 96.9 bits (106), Expect = 2e-15 Identities = 85/105 (81%), Gaps = 5/105 (5%) Strand=Plus/Plus Query 11429 AAATATAGAATTAATAAAAAATCAAAT----TGGCCCATGAAAGGATCGAACCTTCGACC 11484 || |||| | |||| |||||| | || ||||||||| | | |||||||| ||||| Sbjct 4023301 AATTATA-ATTTAAAAAAAAAACTAAACTAATGGCCCATGCAGGTCTCGAACCTGCGACC 4023359 Query 11485 TTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 || ||||||||||||| ||||||| ||||||||||||||| |||| Sbjct 4023360 TTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAATAGGCC 4023404 >seq4 Length=15584765 Score = 95.1 bits (104), Expect = 6e-15 Identities = 73/86 (85%), Gaps = 1/86 (1%) Strand=Plus/Plus Query 11442 ATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACG 11501 ||||||||| || |||||||||| | | | |||||| ||||||||| |||||||||||| Sbjct 9568448 ATAAAAAATTAA-TTGGCCCATGCAGGTCTAGAACCTGCGACCTTCGTGTTATTAGCACG 9568506 Query 11502 ACGCTCTRACCAACTGAGCTAATGGG 11527 ||||||| || |||||| ||||| || Sbjct 9568507 ACGCTCTAACAAACTGAACTAATAGG 9568532 Lambda K H 0.638 0.410 0.920 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261481228114804