Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ananas_20comosus_20[refseq_20GCF_5F001540865.1_202016-03-14] 3,129 sequences; 382,055,938 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq14 131 3e-26 seq2 127 3e-25 seq22 125 1e-24 seq3 125 1e-24 seq23 123 4e-24 seq276 122 1e-23 seq7 122 1e-23 seq4 122 1e-23 seq8 120 5e-23 seq25 80.6 4e-11 >seq14 Length=11705491 Score = 131 bits (144), Expect = 3e-26 Identities = 174/242 (72%), Gaps = 0/242 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||| ||||||| || || || |||||||| || ||||| ||||| || ||| Sbjct 2382796 GCGAAGCGCCATCGCAAGGTGCTCCGCGACAACATCCAGGGGATCACGAAGCCGGCGATC 2382737 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || || ||||| || || ||||| || ||||| || || | |||| || |||| Sbjct 2382736 CGGCGCCTGGCGCGGCGCGGTGGCGTGAAGCGCATCAGCGGTCTCATCTACGAGGAGACG 2382677 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 || | || | |||||||||||| ||| ||| |||| || || || ||| || ||| Sbjct 2382676 CGCGGCGTGCTCAAGATCTTCCTCGAGAACGTCATCCGCGACGCCGTCACCTACACTGAG 2382617 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| || ||||| |||||| ||||||| ||||||| || | ||||| || ||| Sbjct 2382616 CACGCCCGCCGCAAGACCGTCACCGCCATGGACGTCGTCTACGCCCTCAAACGCCAGGGC 2382557 Query 16673 CG 16674 || Sbjct 2382556 CG 2382555 >seq2 Length=17334668 Score = 127 bits (140), Expect = 3e-25 Identities = 184/260 (71%), Gaps = 0/260 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||| || |||| ||| || || |||||||| || ||||| ||||| || ||| Sbjct 847873 GCGAAGCGCCACCGCAAGGTTCTCCGGGACAACATCCAGGGGATCACGAAGCCGGCGATC 847814 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || || ||||| || || || || || ||||| || || | ||||||| |||| Sbjct 847813 CGGCGCCTGGCGCGGCGCGGCGGCGTGAAGCGCATCAGCGGCCTCATCTATGAGGAGACG 847754 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 || | || | |||||||||||| ||| ||| |||| || || || ||| || ||| Sbjct 847753 CGCGGCGTGCTCAAGATCTTCCTCGAGAACGTCATCCGCGACGCCGTCACCTACACTGAG 847694 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| || ||||| |||||| ||||||| ||||||| || | || || || ||| Sbjct 847693 CACGCCCGCCGCAAGACCGTCACCGCCATGGACGTCGTCTACGCCCTCAAGCGCCAGGGC 847634 Query 16673 CGTAAGATTTATGGTTTTGG 16692 || | | ||||| || || Sbjct 847633 CGCACCCTCTATGGCTTCGG 847614 >seq22 Length=10398566 Score = 125 bits (138), Expect = 1e-24 Identities = 173/242 (71%), Gaps = 0/242 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||| || |||| ||| || || |||||||| || ||||| ||||| || ||| Sbjct 8427407 GCGAAGCGCCACCGCAAGGTTCTCCGCGACAACATCCAGGGGATCACGAAGCCCGCGATC 8427348 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || || ||||| || || || || || ||||| || || | |||| || |||| Sbjct 8427347 CGGCGCCTGGCGCGGCGCGGCGGCGTGAAGCGCATCAGCGGCCTCATCTACGAGGAGACC 8427288 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 || | || | |||||||||||| ||| ||| |||| || || || ||| |||||| Sbjct 8427287 CGCGGCGTGCTCAAGATCTTCCTCGAGAACGTCATCCGCGACGCCGTCACCTACACCGAG 8427228 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| || ||||| |||||| ||||||| ||||||| || | || || || ||| Sbjct 8427227 CACGCCCGCCGCAAGACCGTCACCGCCATGGACGTCGTCTACGCCCTCAAGCGCCAGGGC 8427168 Query 16673 CG 16674 || Sbjct 8427167 CG 8427166 >seq3 Length=16781886 Score = 125 bits (138), Expect = 1e-24 Identities = 173/242 (71%), Gaps = 0/242 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||| ||||||| || || || |||||||| || ||||| ||||| || ||| Sbjct 13396157 GCGAAGCGCCATCGCAAGGTGCTCCGCGACAACATCCAGGGGATCACGAAGCCGGCGATC 13396098 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || || ||||| || || ||||| || ||||| || || | |||| || |||| Sbjct 13396097 CGGCGCCTGGCGCGGCGCGGTGGCGTGAAGCGCATCAGCGGTCTCATCTACGAGGAGACG 13396038 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 || | || | |||||||||||| ||| ||| |||| || || || ||| || ||| Sbjct 13396037 CGCGGCGTGCTCAAGATCTTCCTCGAGAACGTCATCCGCGACGCCGTCACCTACACTGAG 13395978 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| || ||||| |||||| ||||||| ||||||| || | || || || ||| Sbjct 13395977 CACGCCCGCCGCAAGACCGTCACCGCCATGGACGTCGTCTACGCCCTCAAGCGCCAGGGC 13395918 Query 16673 CG 16674 || Sbjct 13395917 CG 13395916 >seq23 Length=7979763 Score = 123 bits (136), Expect = 4e-24 Identities = 160/221 (72%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || || |||||||| || ||||| ||||| || ||||| || ||||| || || || Sbjct 1021409 CTCCGCGACAACATCCAGGGGATCACGAAGCCGGCGATCCGGCGCCTGGCGCGGCGCGGC 1021350 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || || ||||| || || || |||| || |||| || | || ||||||||||| Sbjct 1021349 GGCGTGAAGCGGATCAGCGGGCTGATCTACGAGGAGACGCGCGGCGTGCTGAAGATCTTC 1021290 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 || ||| ||| |||| || || || ||| ||||||||||| || ||||| ||| Sbjct 1021289 CTGGAGAACGTCATCCGCGACGCCGTCACCTACACCGAGCACGCCCGCCGCAAGACCGTC 1021230 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCG 16674 ||| ||||||| ||||||| || | || || || ||||| Sbjct 1021229 ACCGCCATGGACGTCGTCTACGCCCTCAAGCGCCAGGGCCG 1021189 >seq276 Length=36307 Score = 122 bits (134), Expect = 1e-23 Identities = 160/222 (72%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 16453 TCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGG 16512 ||| || || |||||||| || ||||| ||||| || ||||| || ||||| || || || Sbjct 20147 TCTCCGCGACAACATCCAGGGGATCACGAAGCCCGCGATCCGGCGCCTGGCGCGGCGCGG 20206 Query 16513 TGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTT 16572 || || ||||| || || | |||| || |||| || | || | |||||||| Sbjct 20207 CGGCGTGAAGCGCATCAGCGGGCTCATCTACGAGGAGACGCGCGGCGTGCTCAAGATCTT 20266 Query 16573 CCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGT 16632 |||| ||| ||| |||| || || || ||| ||||||||||| || ||||| || Sbjct 20267 CCTCGAGAACGTCATCCGCGACGCCGTCACCTACACCGAGCACGCCCGCCGCAAGACCGT 20326 Query 16633 CACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCG 16674 |||| ||||||| ||||||| || | || || || ||||| Sbjct 20327 CACCGCCATGGACGTCGTCTACGCCCTCAAGCGCCAGGGCCG 20368 >seq7 Length=14728688 Score = 122 bits (134), Expect = 1e-23 Identities = 160/222 (72%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 16453 TCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGG 16512 ||| || || |||||||| || ||||| ||||| || ||||| || ||||| || || || Sbjct 11949697 TCTCCGCGACAACATCCAGGGGATCACGAAGCCCGCGATCCGGCGCCTGGCGCGGCGCGG 11949638 Query 16513 TGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTT 16572 || || ||||| || || | |||| || |||| || | || | |||||||| Sbjct 11949637 CGGCGTGAAGCGCATCAGCGGGCTCATCTACGAGGAGACGCGCGGCGTGCTCAAGATCTT 11949578 Query 16573 CCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGT 16632 |||| ||| ||| |||| || || || ||| ||||||||||| || ||||| || Sbjct 11949577 CCTCGAGAACGTCATCCGCGACGCCGTCACCTACACCGAGCACGCCCGCCGCAAGACCGT 11949518 Query 16633 CACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCG 16674 |||| ||||||| ||||||| || | || || || ||||| Sbjct 11949517 CACCGCCATGGACGTCGTCTACGCCCTCAAGCGCCAGGGCCG 11949476 >seq4 Length=15584765 Score = 122 bits (134), Expect = 1e-23 Identities = 171/240 (71%), Gaps = 0/240 (0%) Strand=Plus/Minus Query 16453 TCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGG 16512 ||| || || |||||||| || ||||| ||||| || ||||| || ||||| || || || Sbjct 2720058 TCTCCGCGACAACATCCAGGGGATCACGAAGCCCGCGATCCGGCGCCTGGCGCGGCGCGG 2719999 Query 16513 TGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTT 16572 || || ||||| || || | |||| || |||| || | || | |||||||| Sbjct 2719998 CGGCGTGAAGCGCATCAGCGGGCTCATCTACGAGGAGACGCGCGGCGTGCTCAAGATCTT 2719939 Query 16573 CCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGT 16632 |||| ||| ||| |||| || || || ||| ||||||||||| || ||||| || Sbjct 2719938 CCTCGAGAACGTCATCCGCGACGCCGTCACCTACACCGAGCACGCCCGCCGCAAGACCGT 2719879 Query 16633 CACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692 |||| ||||||| ||||||| || | || || || ||||| | | ||||| || || Sbjct 2719878 CACCGCCATGGACGTCGTCTACGCCCTCAAGCGCCAGGGCCGCACCCTCTATGGCTTCGG 2719819 >seq8 Length=13970067 Score = 120 bits (132), Expect = 5e-23 Identities = 159/221 (72%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || || |||||||| || || || ||||| || ||||| || ||||| || || || Sbjct 10831908 CTGCGGGACAACATCCAGGGGATAACGAAGCCGGCGATCCGGCGGCTGGCGCGGCGCGGC 10831849 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || || ||||| || || || |||| || |||| || | || | ||||||||| Sbjct 10831848 GGGGTGAAGCGGATCAGCGGGCTGATCTACGAGGAGACGCGCGGCGTGCTCAAGATCTTC 10831789 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 ||| ||| ||| |||| || || || ||| ||||||||||| || ||||| ||| Sbjct 10831788 CTCGAGAACGTCATCCGCGACGCCGTCACCTACACCGAGCACGCCCGCCGCAAGACCGTC 10831729 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCG 16674 ||| ||||||| ||||||| || | || || || ||||| Sbjct 10831728 ACCGCCATGGACGTCGTCTACGCCCTCAAGCGCCAGGGCCG 10831688 >seq25 Length=3739203 Score = 80.6 bits (88), Expect = 4e-11 Identities = 125/179 (70%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||| || |||| || || || |||||||| || ||||| ||||| || ||| Sbjct 1290829 GCGAAGCGCCACCGCAAGGTGCTCCGCGACAACATCCAGGGGATCACGAAGCCCGCGATC 1290770 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || || ||||| || || || || || ||||| || || | |||| || |||| Sbjct 1290769 CGGCGCCTGGCGCGGCGCGGCGGGGTGAAGCGCATCAGCGGGCTCATCTACGAGGAGACG 1290710 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || | |||||||||||| ||| ||| |||| || || || ||| ||||| Sbjct 1290709 CGCGGCGTGCTCAAGATCTTCCTCGAGAACGTCATCCGCGACGCCGTCACCTACACCGA 1290651 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79072339133397