Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ananas_20comosus_20[refseq_20GCF_5F001540865.1_202016-03-14] 3,129 sequences; 382,055,938 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq5 87.8 2e-12 seq2 86.0 8e-12 seq336 82.4 1e-10 >seq5 Length=15024279 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 63611 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATT 63670 ||| || ||||| |||| || || ||||| || || ||||| || || | | || Sbjct 11649133 AGTGCCAGCATTGAATAGTGTTGGGGAAGCATGAGTGAACCAACGTTGGGACATCAAATG 11649074 Query 63671 GTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAA 63730 |||||| ||| | || || ||||| || || ||||| || || || | ||||| Sbjct 11649073 GTACGTTCTGATAACAGACTCGATATCATCTTTGTGGATTCCAACAGCAACTCTCATTAG 11649014 Query 63731 CATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAA 63790 ||||||||| || ||||| || | ||| | |||||| | |||||| | || | Sbjct 11649013 CATGTGCTGTGGCCTTTCTACTACCTTTCCAGAAACTTTCAAGAGATAGGATCTCTCAAG 11648954 Query 63791 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 63838 ||| || ||||||||||||| || ||||||| || ||||| || Sbjct 11648953 AGTCTTGAAACCAAAATAGTCATAGTCGAAGTCTCTGTCATAAATTAT 11648906 >seq2 Length=17334668 Score = 86.0 bits (94), Expect = 8e-12 Identities = 91/120 (76%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 33304 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 33363 || ||||| |||||||| || |||||||| | || || |||||||| || ||||| Sbjct 14397015 CAAGCGAAGTCGCAGTGGAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGC 14396956 Query 33364 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAG 33423 |||||||| ||||||||||| || ||||| || |||| | | || || || |||||| Sbjct 14396955 CCGGGCATGAGGCCACGCTTCTTGAGCCAGAAGATGGCTCAGCAGGAGCCGGAGAAGAAG 14396896 >seq336 Length=33712 Score = 82.4 bits (90), Expect = 1e-10 Identities = 90/120 (75%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 33304 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 33363 || ||||| |||||||| || |||||||| | || || | |||||| || ||||| Sbjct 19108 CAGGCGAAGTCGCAGTGGAGGCCCTCGTCGCGGGAGATGAGCTTGTTGGAGAAGGTGAGC 19049 Query 33364 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAG 33423 |||||||| ||||||||||| || ||||| || |||| | | || || || |||||| Sbjct 19048 CCGGGCATGAGGCCACGCTTCTTGAGCCAGAAGATGGCTCAGCAGGAGCCGGAGAAGAAG 18989 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622922834977640