Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ananas_20comosus_20[refseq_20GCF_5F001540865.1_202016-03-14] 3,129 sequences; 382,055,938 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq23 131 1e-25 seq3 100 2e-16 seq10 89.7 3e-13 >seq23 Length=7979763 Score = 131 bits (144), Expect = 1e-25 Identities = 86/95 (91%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||||||| ||||||||| |||| || |||||||| Sbjct 6794545 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGACAGGGACAGTGGGAATCTCGT 6794604 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 6794605 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 6794639 >seq3 Length=16781886 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 || ||||||||||| | || | ||| ||||| || || |||| ||||||||| ||| Sbjct 16131710 CCCCCTCTCAAACGGAGAACAAGATGGAGAGTTGATTCTTTCTGAACATTGTAATCGGAC 16131651 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 | | | |||| || | ||| || || ||||| || || | || || || |||||| Sbjct 16131650 AGAGTTCTCCCGTCCTCGAGTTGCTTGCCAGCAAAGATGAGCCTCTGCTGGTCTGAGGGG 16131591 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | |||||| |||||| ||||||| ||| || |||| | ||||| | ||||| Sbjct 16131590 ATGCCTTCCTTGTCCTGAATTTTTGCCTTGACGTTCTCAATTGTATCAGAGGTCTCAACC 16131531 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318 || | || || || || || || | ||| || || || ||||||||| Sbjct 16131530 TCCAGAGTTATGGTCTTTCCGGTAAGGGTCTTGACAAAAATCTGCATG 16131483 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 || ||||||||||| | || | ||| ||||| || || |||| ||||||||| ||| Sbjct 16199514 CCCCCTCTCAAACGGAGAACAAGATGGAGAGTTGATTCTTTCTGAACATTGTAATCGGAC 16199455 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 | | | |||| || | ||| || || ||||| || || | || || || |||||| Sbjct 16199454 AGAGTTCTCCCGTCCTCGAGTTGCTTGCCAGCAAAGATGAGCCTCTGCTGGTCTGAGGGG 16199395 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | |||||| |||||| ||||||| ||| || |||| | ||||| | ||||| Sbjct 16199394 ATGCCTTCCTTGTCCTGAATTTTTGCCTTGACGTTCTCAATTGTATCAGAGGTCTCAACC 16199335 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318 || | || || || || || || | ||| || || || ||||||||| Sbjct 16199334 TCCAGAGTTATGGTCTTTCCGGTAAGGGTCTTGACAAAAATCTGCATG 16199287 Score = 98.7 bits (108), Expect = 7e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 38109 ACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCT 38168 ||||||||||| ||| ||||||||| || ||||| || || || || | || || Sbjct 16131920 ACCAAATGAAGGGTGGACTCCTTTTGGATGTTGTACTCTGATAAGGTCCGGCCATCCTCC 16131861 Query 38169 AATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATA 38228 ||||| || || |||||||| || || || ||||||| ||| ||||||||||| | Sbjct 16131860 AATTGCTTCCCAGCAAATATGAGCCGCTGCTGATCGGGAAGGATTCCTTCTTTGTCTTGA 16131801 Query 38229 ATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTA 38288 ||||| ||||| || | | || || || ||||| || | || || || || Sbjct 16131800 ATTTTACCCTTCAGGTTTTCAATTGTGTCAGAGCTCTCAACCTCGAGAGTGATGGTCTTT 16131741 Query 38289 CCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || || | ||| ||||| || |||||||| Sbjct 16131740 CCAGTGAGGGTCTTCACAAAAATCTGCAT 16131712 Score = 98.7 bits (108), Expect = 7e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 38109 ACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCT 38168 ||||||||||| ||| ||||||||| || ||||| || || || || | || || Sbjct 16199724 ACCAAATGAAGGGTGGACTCCTTTTGGATGTTGTACTCTGATAAGGTCCGGCCATCCTCC 16199665 Query 38169 AATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATA 38228 ||||| || || |||||||| || || || ||||||| ||| ||||||||||| | Sbjct 16199664 AATTGCTTCCCAGCAAATATGAGCCGCTGCTGATCGGGAAGGATTCCTTCTTTGTCTTGA 16199605 Query 38229 ATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTA 38288 ||||| ||||| || | | || || || ||||| || | || || || || Sbjct 16199604 ATTTTACCCTTCAGGTTTTCAATTGTGTCAGAGCTCTCAACCTCGAGAGTGATGGTCTTT 16199545 Query 38289 CCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || || | ||| ||||| || |||||||| Sbjct 16199544 CCAGTGAGGGTCTTCACAAAAATCTGCAT 16199516 >seq10 Length=13112115 Score = 89.7 bits (98), Expect = 3e-13 Identities = 150/217 (69%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 38102 ACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTC 38161 ||| | ||| | |||||| ||| ||||||||||||||||| || || || || || Sbjct 3654277 ACGAAGCACGAGATGAAGGGTGGATTCCTTTTGAATATTGTAGTCCGATAAGCACCGATC 3654336 Query 38162 GTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTT 38221 || || ||||| || || || || || || || || || || | |||| ||| || || Sbjct 3654337 ATCCTCCAATTGCTTCCCTGCGAAGATCAGCCGCTGCTGGTCAGGAGGGATGCCCTCCTT 3654396 Query 38222 GTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAAT 38281 |||| || || ||||||||| || || || || || || || | || || Sbjct 3654397 GTCCTGGATCTTCGACTTCACATTGGCAACGGTGTCGGAGCTCTCGACCTCGAGAGTGAT 3654456 Query 38282 AGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318 || || || || | ||| |||||||| ||||||||| Sbjct 3654457 GGTCTTTCCGGTGAGGGTCTTCACGAAGATCTGCATG 3654493 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334934426893199