Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ananas_20comosus_20[refseq_20GCF_5F001540865.1_202016-03-14] 3,129 sequences; 382,055,938 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq3 104 2e-17 seq10 95.1 1e-14 >seq3 Length=16781886 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| |||||||||||| | ||||| || ||||||| | || || ||| || Sbjct 16131256 ATGCAAATCTTTGTAAAGACTCTCACCGGAAAGACCATCACCTTGGAGGTTGAGAGCTCC 16131315 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| ||||| | ||| || ||| ||||| || || || || | || || Sbjct 16131316 GACACGATCGAAAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCTCGGATCAG 16131375 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 || || | || ||||| ||||||||| | || || | || |||| || || |||||| Sbjct 16131376 CAAAGGCTCATCTTTGCAGGCAAACAACTCGAGGACGGTCACACTCTGTCGGACTACAAT 16131435 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 |||| |||||||| || || || | || ||| | || ||||| || Sbjct 16131436 GTTCAGAAAGAATCAACCCTTCACCTCGTCCTACGTCTGAGAGGTGG 16131482 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| |||||||||||| | ||||| || ||||||| | || || ||| || Sbjct 16199060 ATGCAAATCTTTGTAAAGACTCTCACCGGAAAGACCATCACCTTGGAGGTTGAGAGCTCC 16199119 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| ||||| | ||| || ||| ||||| || || || || | || || Sbjct 16199120 GACACGATCGAAAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCTCGGATCAG 16199179 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 || || | || ||||| ||||||||| | || || | || |||| || || |||||| Sbjct 16199180 CAAAGGCTCATCTTTGCAGGCAAACAACTCGAGGACGGTCACACTCTGTCAGACTACAAT 16199239 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 |||| |||||||| || || || | || ||| | || ||||| || Sbjct 16199240 GTTCAGAAAGAATCAACCCTTCACCTCGTCCTACGTCTGAGAGGTGG 16199286 Score = 98.7 bits (108), Expect = 9e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| | || || || ||||||| |||| || ||| ||| Sbjct 16131712 ATGCAGATTTTTGTGAAGACCCTCACTGGAAAGACCATCACTCTCGAGGTTGAGAGCTCT 16131771 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| || || |||||| ||||| ||||||||||| || | || || || Sbjct 16131772 GACACAATTGAAAACCTGAAGGGTAAAATTCAAGACAAAGAAGGAATCCTTCCCGATCAG 16131831 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 |||||| | || ||||| || || ||||| || |||| || || | || ||||| Sbjct 16131832 CAGCGGCTCATATTTGCTGGGAAGCAATTGGAGGATGGCCGGACCTTATCAGAGTACAAC 16131891 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || ||||| || ||||| || ||||| || || Sbjct 16131892 ATCCAAAAGGAGTCCACCCTTCATTTGGTTCT 16131923 Score = 98.7 bits (108), Expect = 9e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| | || || || ||||||| |||| || ||| ||| Sbjct 16199516 ATGCAGATTTTTGTGAAGACCCTCACTGGAAAGACCATCACTCTCGAGGTTGAGAGCTCT 16199575 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| || || |||||| ||||| ||||||||||| || | || || || Sbjct 16199576 GACACAATTGAAAACCTGAAGGGTAAAATTCAAGACAAAGAAGGAATCCTTCCCGATCAG 16199635 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 |||||| | || ||||| || || ||||| || |||| || || | || ||||| Sbjct 16199636 CAGCGGCTCATATTTGCTGGGAAGCAATTGGAGGATGGCCGGACCTTATCAGAGTACAAC 16199695 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || ||||| || ||||| || ||||| || || Sbjct 16199696 ATCCAAAAGGAGTCCACCCTTCATTTGGTTCT 16199727 >seq10 Length=13112115 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| | ||||| || ||||||| |||| || ||| || Sbjct 3654492 ATGCAGATCTTCGTGAAGACCCTCACCGGAAAGACCATCACTCTCGAGGTCGAGAGCTCC 3654433 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| | | ||||| || ||| ||||| || || || || |||||||| Sbjct 3654432 GACACCGTTGCCAATGTGAAGTCGAAGATCCAGGACAAGGAGGGCATCCCTCCTGACCAG 3654373 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 |||||| | || || || || || ||||| || |||||||| | || |||||| Sbjct 3654372 CAGCGGCTGATCTTCGCAGGGAAGCAATTGGAGGATGATCGGTGCTTATCGGACTACAAT 3654313 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 |||||||| |||||||| || ||| | ||||| Sbjct 3654312 ATTCAAAAGGAATCCACCCTTCATCTCGTGCT 3654281 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433311475172135