Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ananas_20comosus_20[refseq_20GCF_5F001540865.1_202016-03-14] 3,129 sequences; 382,055,938 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq22 118 2e-21 seq433 105 1e-17 seq21 105 1e-17 seq24 95.1 2e-14 seq17 95.1 2e-14 seq20 91.5 3e-13 seq11 89.7 1e-12 seq16 87.8 4e-12 seq9 87.8 4e-12 seq2 87.8 4e-12 seq1 87.8 4e-12 >seq22 Length=10398566 Score = 118 bits (130), Expect = 2e-21 Identities = 113/145 (78%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 218657 AGGTCGCTCAGTTTTCTGGTTATGTATCCGAAATTTCTGGCTACCATCACGGTGAGCAGA 218716 |||| || ||||| ||||||||||| ||||| ||| | ||||| ||||||||||||| Sbjct 517533 AGGTTGCCCAGTTCTCTGGTTATGTTTCCGAGCATTCAGCATACCACCACGGTGAGCAGA 517592 Query 218717 GTCTGCAGGGTGCCATTGTAGGCATGGCACAGGACTATGTGGGCAGTAACAACATGAACT 218776 |||| || ||||| | || ||||| || || | ||||||||| |||||||| ||| Sbjct 517593 GTCTTGCTAGTACCATTATTGGAATGGCTCAAGATTTTGTGGGCAGCAACAACATAAACC 517652 Query 218777 TGCTGCTCCCCAACGGTCAGTTTGG 218801 | |||| || ||||| |||||||| Sbjct 517653 TTCTGCAGCCTAACGGACAGTTTGG 517677 >seq433 Length=30188 Score = 105 bits (116), Expect = 1e-17 Identities = 284/432 (66%), Gaps = 2/432 (0%) Strand=Plus/Minus Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622 |||||||| || | |||||||| || ||||| |||||||| ||||||||||||| | | Sbjct 24512 TCGAAGAAGTTGGTCTTGCCCTGGAGGGAGATGAGCTCCATCCAGTCGAAGGGGTTGGCG 24453 Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGA 251682 | |||| ||||| ||| || || ||| || |||||| || || ||||| | Sbjct 24452 ACGGCGTACATCTTGGCGCAGCCGAGGGCGGCGAGGAGGCGGTCGGCGACGAACTCGATG 24393 Query 251683 TACTGTCCCATCAGTTCAGAGTTCATGCCAATCATA-CGACAAGGAATTGCCTCACAGAT 251741 ||||| | ||| || ||||||||| | | |||| ||| || || |||| Sbjct 24392 TACTGGCTCATGAGGCGGCCGTTCATGCCGACGAGGGCGACGGGGAGG-GCGTCGCAGAC 24334 Query 251742 GAATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTGCCTTCACCTGTGCCAGAGACAG 251801 ||| || ||| || | || || || || || || || | | | | || Sbjct 24333 GAACTCGCGCTCGATGTCGACGGCGTCGCGGACGATGGCGCGGACGCGGGGCTCGGGGAG 24274 Query 251802 CTTGTTCTCCAGCTTTGAGTACAGGAGCTCGCCAAACTGTTGGTGCAGACCCTCGTCGCG 251861 | || ||||| ||||| | | || | ||| || ||||||||||| Sbjct 24273 GCGGCGGCGGAGGAGGGAGTAGAGGAGGCAGGCGAAGTCGCAGTGGAGGCCCTCGTCGCG 24214 Query 251862 ACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCCACGGTTCCTGAGCCAGAA 251921 ||||| ||||||||| | ||||| ||||| | || || ||| |||||||||| Sbjct 24213 GGAGATGAGCTCGTTGGAGAAGGTGAGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAGAA 24154 Query 251922 GATTGCGCAAAAGGATCCAGAGAACAGCAGACCCTCGACACACACCCATGCAACAAGGCG 251981 ||| ||||| ||||| || ||||| | | |||||||| || | | || || ||||| Sbjct 24153 GATGGCGCAGAAGGAGCCGGAGAAGAAGACGCCCTCGACGCAGGCGAAGGCGACGAGGCG 24094 Query 251982 CTCAGCAAACGA 251993 ||| || || || Sbjct 24093 CTCGGCGAAGGA 24082 >seq21 Length=10645290 Score = 105 bits (116), Expect = 1e-17 Identities = 284/432 (66%), Gaps = 2/432 (0%) Strand=Plus/Minus Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622 |||||||| || | |||||||| || ||||| |||||||| ||||||||||||| | | Sbjct 999733 TCGAAGAAGTTGGTCTTGCCCTGGAGGGAGATGAGCTCCATCCAGTCGAAGGGGTTGGCG 999674 Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGA 251682 | |||| ||||| ||| || || ||| || |||||| || || ||||| | Sbjct 999673 ACGGCGTACATCTTGGCGCAGCCGAGGGCGGCGAGGAGGCGGTCGGCGACGAACTCGATG 999614 Query 251683 TACTGTCCCATCAGTTCAGAGTTCATGCCAATCATA-CGACAAGGAATTGCCTCACAGAT 251741 ||||| | ||| || ||||||||| | | |||| ||| || || |||| Sbjct 999613 TACTGGCTCATGAGGAGGCCGTTCATGCCGACGAGGGCGACGGGGAGG-GCGTCGCAGAC 999555 Query 251742 GAATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTGCCTTCACCTGTGCCAGAGACAG 251801 ||| || ||| || | || || || || || || || | | | | || Sbjct 999554 GAACTCGCGCTCGATGTCGACGGCGTCGCGGACGATGGCGCGGACGCGGGGCTCGGGGAG 999495 Query 251802 CTTGTTCTCCAGCTTTGAGTACAGGAGCTCGCCAAACTGTTGGTGCAGACCCTCGTCGCG 251861 | || ||||| ||||| | | || | ||| || ||||||||||| Sbjct 999494 GCGGCGGCGGAGGAGGGAGTAGAGGAGGCAGGCGAAGTCGCAGTGGAGGCCCTCGTCGCG 999435 Query 251862 ACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCCACGGTTCCTGAGCCAGAA 251921 ||||| ||||||||| | ||||| ||||| | || || ||| |||||||||| Sbjct 999434 GGAGATGAGCTCGTTGGAGAAGGTGAGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAGAA 999375 Query 251922 GATTGCGCAAAAGGATCCAGAGAACAGCAGACCCTCGACACACACCCATGCAACAAGGCG 251981 ||| ||||| ||||| || ||||| | | |||||||| || | | || || ||||| Sbjct 999374 GATGGCGCAGAAGGAGCCGGAGAAGAAGACGCCCTCGACGCAGGCGAAGGCGACGAGGCG 999315 Query 251982 CTCAGCAAACGA 251993 ||| || || || Sbjct 999314 CTCGGCGAAGGA 999303 >seq24 Length=7684463 Score = 95.1 bits (104), Expect = 2e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142497 TGAGATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGG 142556 ||||| |||||| ||||||||| |||||||||| || ||||||| || ||||||||||| Sbjct 6104575 TGAGACAGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGG 6104634 Query 142557 TTCGAGCCCCAC 142568 |||||||||||| Sbjct 6104635 TTCGAGCCCCAC 6104646 >seq17 Length=11156084 Score = 95.1 bits (104), Expect = 2e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142497 TGAGATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGG 142556 ||||| |||||| ||||||||| |||||||||| || ||||||| || ||||||||||| Sbjct 3195587 TGAGACAGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGG 3195528 Query 142557 TTCGAGCCCCAC 142568 |||||||||||| Sbjct 3195527 TTCGAGCCCCAC 3195516 >seq20 Length=10792357 Score = 91.5 bits (100), Expect = 3e-13 Identities = 65/75 (87%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 142494 TGGTGAGATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGT 142553 |||| | | |||||| ||||||||| |||||||||| || ||||||| || |||||||| Sbjct 9673444 TGGTCACAAAGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGT 9673503 Query 142554 GGGTTCGAGCCCCAC 142568 ||||||||||||||| Sbjct 9673504 GGGTTCGAGCCCCAC 9673518 >seq11 Length=13096665 Score = 89.7 bits (98), Expect = 1e-12 Identities = 60/67 (90%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 142502 TAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGA 142561 ||||||| ||||||||| |||||||||| || ||||||| || |||||||||||||||| Sbjct 11804263 TAGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGA 11804204 Query 142562 GCCCCAC 142568 ||||||| Sbjct 11804203 GCCCCAC 11804197 >seq16 Length=11174208 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 9853759 AGCCCGTCTAGCTCAGTAGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 9853700 Query 142563 CCCCAC 142568 |||||| Sbjct 9853699 CCCCAC 9853694 >seq9 Length=13841557 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 235620 AGCCCGTCTAGCTCAGTAGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 235679 Query 142563 CCCCAC 142568 |||||| Sbjct 235680 CCCCAC 235685 >seq2 Length=17334668 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 14092804 AGCCCGCCTAGCTCAGTAGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 14092863 Query 142563 CCCCAC 142568 |||||| Sbjct 14092864 CCCCAC 14092869 Score = 84.2 bits (92), Expect = 4e-11 Identities = 110/150 (73%), Gaps = 3/150 (2%) Strand=Plus/Minus Query 251844 GTGCAGACCCTCGTCGCGACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCC 251903 ||| || ||||||||||| ||||| ||||||||| | || || ||||| | || Sbjct 14397001 GTGGAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGCCCGGGCATGAGGCC 14396942 Query 251904 ACGGTTCCTGAGCCAGAAGATTGCGCAAAAGGATCCAGAGAACAGCAGACCCTCGACACA 251963 ||| ||| ||||||||||||| || || |||| || |||| || || |||||||| || Sbjct 14396941 ACGCTTCTTGAGCCAGAAGATGGCTCAGCAGGAGCCGGAGA--AGAAG-CCCTCGACGCA 14396885 Query 251964 CACCCATGCAACAAGGCGCTCAGCAAACGA 251993 | | || || |||||||| || || || Sbjct 14396884 GGCGAAGGCGACGAGGCGCTCGGCGAAAGA 14396855 >seq1 Length=24880688 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 21550458 AGCCCGTCTAGCTCAGTAGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 21550517 Query 142563 CCCCAC 142568 |||||| Sbjct 21550518 CCCCAC 21550523 Score = 84.2 bits (92), Expect = 4e-11 Identities = 58/66 (88%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| ||||| |||| || ||||||| || ||||||||||||||||| Sbjct 1253128 AGCCCGTCTAGCTCAGTAGGTAGGGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 1253187 Query 142563 CCCCAC 142568 |||||| Sbjct 1253188 CCCCAC 1253193 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027795593701489