Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ananas_20comosus_20[refseq_20GCF_5F001540865.1_202016-03-14] 3,129 sequences; 382,055,938 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq12 98.7 8e-16 seq8 82.4 6e-11 >seq12 Length=12612916 Score = 98.7 bits (108), Expect = 8e-16 Identities = 109/143 (76%), Gaps = 2/143 (1%) Strand=Plus/Minus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCA-ATTGTCG 33968 || || ||||| || || ||||| ||||||||| |||||||| || |||| | || | Sbjct 12401232 AGACGGAGCACGAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCCGCCAGAGTGCGG 12401173 Query 33969 CTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTC 34028 | |||| ||||| ||||||||||| || ||||| |||||||| ||| ||| | | ||| Sbjct 12401172 C-CGTCCTCCAACTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCCGGCGGGATCCCCTC 12401114 Query 34029 TTTGTCCATAATTTTTTGCTTAA 34051 |||||| |||||| ||||| Sbjct 12401113 CTTGTCCTGGATTTTTGCCTTAA 12401091 Score = 84.2 bits (92), Expect = 2e-11 Identities = 101/135 (75%), Gaps = 2/135 (1%) Strand=Plus/Minus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTC-G 33968 || || ||||| || || ||||| ||||||||| |||||||| ||||| || ||| | Sbjct 12401004 AGACGGAGCACGAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCTGC-AAGAGTCCG 12400946 Query 33969 CTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTC 34028 |||| ||||| ||||||||||| || |||| |||||||| ||| || | | ||| Sbjct 12400945 ACCGTCCTCCAACTGCTTGCCGGCGAAGATCAACCGCTGCTGGTCCGGGGGGATCCCCTC 12400886 Query 34029 TTTGTCCATAATTTT 34043 |||||| ||||| Sbjct 12400885 CTTGTCCTGGATTTT 12400871 >seq8 Length=13970067 Score = 82.4 bits (90), Expect = 6e-11 Identities = 106/144 (74%), Gaps = 2/144 (1%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || || ||||||| || ||| || || || ||| ||| ||||| ||||||||||| | | Sbjct 10823724 CCCCCCCTCAGCCTCAACACGAGGTGGAGGGTGGACTCTTTCTGGATGTTGTAATCCG-C 10823782 Query 33961 AATTGT-CGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 || ||| || | || || | ||||| ||||| || ||||| |||||||||||| || Sbjct 10823783 AAGTGTGCGGCCATCCTCGAGCTGCTTCCCGGCGAAGATCAGACGCTGCTGATCCGGGGG 10823842 Query 34020 CACGCTCTCTTTGTCCATAATTTT 34043 | || ||| || ||| ||| || Sbjct 10823843 AATGCCCTCCTTATCCTGAATCTT 10823866 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397047258149458