Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ananas_20comosus_20[refseq_20GCF_5F001540865.1_202016-03-14] 3,129 sequences; 382,055,938 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq433 129 7e-25 seq21 129 7e-25 seq22 118 1e-21 seq2 114 2e-20 seq336 109 7e-19 seq300 105 8e-18 seq647 93.3 5e-14 >seq433 Length=30188 Score = 129 bits (142), Expect = 7e-25 Identities = 119/151 (79%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 126058 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGACC 126117 |||||| |||||||| ||||||||||| || || |||||| || || |||||||| || Sbjct 24231 GTGGAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCGGGCATGAGGCC 24172 Query 126118 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCACACA 126177 |||||||| | |||||| || || || || || || |||||||||| ||||| || || Sbjct 24171 GCGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCGGAGAAGAAGACGCCCTCGACGCA 24112 Query 126178 CGCGAACGCAAAGAGACGCTCAGCAAAGGAG 126208 ||||| || | ||| ||||| || |||||| Sbjct 24111 GGCGAAGGCGACGAGGCGCTCGGCGAAGGAG 24081 >seq21 Length=10645290 Score = 129 bits (142), Expect = 7e-25 Identities = 119/151 (79%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 126058 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGACC 126117 |||||| |||||||| ||||||||||| || || |||||| || || |||||||| || Sbjct 999452 GTGGAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCGGGCATGAGGCC 999393 Query 126118 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCACACA 126177 |||||||| | |||||| || || || || || || |||||||||| ||||| || || Sbjct 999392 GCGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCGGAGAAGAAGACGCCCTCGACGCA 999333 Query 126178 CGCGAACGCAAAGAGACGCTCAGCAAAGGAG 126208 ||||| || | ||| ||||| || |||||| Sbjct 999332 GGCGAAGGCGACGAGGCGCTCGGCGAAGGAG 999302 >seq22 Length=10398566 Score = 118 bits (130), Expect = 1e-21 Identities = 221/317 (70%), Gaps = 6/317 (2%) Strand=Plus/Plus Query 10877 AAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCG-GG 10935 ||||||||||||||||| | ||| || |||||||| || ||||| || || || || | Sbjct 8185040 AAGCCATCCATCTCAGTGAGGAGCTGGTTGATGGTCTGCTCGCGCTCGTCGTTGCCGCCG 8185099 Query 10936 CATACCACCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATACA 10995 | | | ||||| | ||| || ||||||||||| || || |||||||| ||||| || Sbjct 8185100 CCGAGC-CCCGCCCCGCGCTGGCGGCCGACGGCGTCGATCTCGTCGATGAAGACGATGCA 8185158 Query 10996 CGGTTGATTTTCAC-GGGCAACTTCAAAGATATCTCGGACTCTCTTGGCACCGACACCCA 11054 || | || || ||| || |||| || ||||| | ||| ||||| || | Sbjct 8185159 -GGGGGCCTTGGACTTGGCCTTCTCGAAGAGGTCCCGGACGCGGGAGGCGCCGACGCCGA 8185217 Query 11055 CAAACATTTCCACAAAATTGGCGGCGGAACATTGGATGAAGGGGACGTTGGATTCACCCG 11114 | || | || || || | || ||||| || || |||||||||| || || || | Sbjct 8185218 CGAAGAGCTCGACGAATTCGGAGGCGGCGCAGGAGAAGAAGGGGACGCCGGCCTCGCCGG 8185277 Query 11115 CGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCAGGTTTCCCTGCGAGAAGGGCACCAC 11174 ||| ||| |||||||| |||||||| || || || || || |||| | |||| | | Sbjct 8185278 CGACGGCGCGGGCGAGCAGGGTCTTGCCGGTGCCGGGGGGGCCGACGAGGA-GGCAGCCC 8185336 Query 11175 GT-GGGATCCTGGCACC 11190 | |||||| |||| || Sbjct 8185337 TTGGGGATCTTGGCGCC 8185353 Score = 82.4 bits (90), Expect = 9e-11 Identities = 119/162 (73%), Gaps = 6/162 (4%) Strand=Plus/Minus Query 172855 AACTGCGAGGGTCTTCGCGGAATCACCCTCCGTCACGATGAGCGTACACTTTCCAGA-TT 172913 ||| ||||| | ||| |||||||| ||||| |||| || | |||||||| |||| || Sbjct 516199 AACAGCGAGAGCCTTAGCGGAATCTCCCTCAGTCAAAATCAAGGTACACTTGTCAGAGTT 516140 Query 172914 GTGCCGTCCCCGCCTTGTTCGCATCGTCCAACTTGGGAATACCAGTAATT-TTGGACT-T 172971 | || ||| || | || ||||| || | || ||||| ||||||||| || | || | Sbjct 516139 CTTCCCTCCG-GCATCATTAGCATCCTCAAGTTTAGGAATTCCAGTAATTCTTTGCCTCT 516081 Query 172972 GCGGGCACCATCTGTCTTCTTGAGTTCCTTCATCTCCTTGAA 173013 || | ||||||||||||| | |||||| ||| |||||| Sbjct 516080 TCGTTC--CATCTGTCTTCTTCAATTCCTTGCTCTGCTTGAA 516041 >seq2 Length=17334668 Score = 114 bits (126), Expect = 2e-20 Identities = 117/152 (77%), Gaps = 3/152 (2%) Strand=Plus/Minus Query 126058 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGACC 126117 |||||| |||||||| ||||||||||| || || |||||| || || |||||||| || Sbjct 14397001 GTGGAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGCCCGGGCATGAGGCC 14396942 Query 126118 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCACACA 126177 |||||||| | |||||| || || || | || || ||||||||| ||||| || || Sbjct 14396941 ACGCTTCTTGAGCCAGAAGATGGCTCAGCAGGAGCCGGAGAAGAAG---CCCTCGACGCA 14396885 Query 126178 CGCGAACGCAAAGAGACGCTCAGCAAAGGAGC 126209 ||||| || | ||| ||||| || || |||| Sbjct 14396884 GGCGAAGGCGACGAGGCGCTCGGCGAAAGAGC 14396853 >seq336 Length=33712 Score = 109 bits (120), Expect = 7e-19 Identities = 123/163 (75%), Gaps = 5/163 (3%) Strand=Plus/Minus Query 126058 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGACC 126117 |||||| |||||||| ||||||||||| | || |||||| || || |||||||| || Sbjct 19094 GTGGAGGCCCTCGTCGCGGGAGATGAGCTTGTTGGAGAAGGTGAGCCCGGGCATGAGGCC 19035 Query 126118 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCACACA 126177 |||||||| | |||||| || || || | || || ||||||||| ||||| || || Sbjct 19034 ACGCTTCTTGAGCCAGAAGATGGCTCAGCAGGAGCCGGAGAAGAAG---CCCTCGACGCA 18978 Query 126178 CGCGAACGCAAAGAGACGCTCAGCAAAGGAGC--GCGACTTTG 126218 ||||| || | || ||||| || ||| ||| ||| ||||| Sbjct 18977 GGCGAAGGCGACGAAGCGCTCGGCGAAGAAGCAGGCGGCTTTG 18935 >seq300 Length=35074 Score = 105 bits (116), Expect = 8e-18 Identities = 115/152 (76%), Gaps = 3/152 (2%) Strand=Plus/Plus Query 126058 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGACC 126117 |||||| ||||| || ||||||||||| | || |||||| || || |||||||| || Sbjct 28737 GTGGAGGCCCTCATCGCGGGAGATGAGCTTGTTGGAGAAGGTGAGCCCGGGCATGAGGCC 28796 Query 126118 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCACACA 126177 |||||||| | |||||| || || || | || || ||||||||| ||||| || | Sbjct 28797 ACGCTTCTTGAGCCAGAAGATGGCTCAGCAGGAGCCGGAGAAGAAG---CCCTCGACGTA 28853 Query 126178 CGCGAACGCAAAGAGACGCTCAGCAAAGGAGC 126209 ||||| || | ||| ||||| || ||||||| Sbjct 28854 GGCGAAGGCGACGAGGCGCTCGGCGAAGGAGC 28885 >seq647 Length=24519 Score = 93.3 bits (102), Expect = 5e-14 Identities = 112/152 (74%), Gaps = 3/152 (2%) Strand=Plus/Plus Query 126058 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGACC 126117 |||||| |||||||| ||||||||||| | || |||||| || || ||||||| || Sbjct 9977 GTGGAGGCCCTCGTCGCGGGAGATGAGCTTGTTGGAGAAGGTGAGCCCGAGCATGAGGCC 10036 Query 126118 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCACACA 126177 |||||| | |||||| || || || | || || ||||||||| ||||| || || Sbjct 10037 ATTCTTCTTGAGCCAGAAGATGGCTCAGCAGGAGCCGGAGAAGAAG---CCCTCGACGCA 10093 Query 126178 CGCGAACGCAAAGAGACGCTCAGCAAAGGAGC 126209 || || || | ||| ||||| || || |||| Sbjct 10094 GGCAAAGGCGACGAGGCGCTCGGCGAAAGAGC 10125 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597330236007320