Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ananas_20comosus_20[refseq_20GCF_5F001540865.1_202016-03-14] 3,129 sequences; 382,055,938 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq8 91.5 1e-13 seq3 86.0 4e-12 >seq8 Length=13970067 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGT 15033 |||||||| || || || || ||||||||||| || | | | || || | || Sbjct 10823292 TGAAGGGTGGATTCCTTCTGGATGTTGTAATCCGCCAGGGTGCGGCCATCCTCAAGCTGC 10823351 Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTG 15093 || |||||| | ||||||||||| ||||| ||||| || |||||||| ||| || Sbjct 10823352 TTCCCAGCGAAGATCAAACGCTGCTGGTCCGGCGGAATCCCCTCCTTGTCCTGAATCTTA 10823411 Query 15094 CTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTC 15153 || ||| | || ||||||||| | || || || ||||| || || || || || Sbjct 10823412 GCCTTCACATTATCAATAGTATCGGAGCTCTCAACCTCCAAGGTGATCGTCTTGCCGGTG 10823471 Query 15154 AGAGTTTTTACAAAAATTTGCAT 15176 || || || ||||| |||||||| Sbjct 10823472 AGGGTCTTGACAAAGATTTGCAT 10823494 >seq3 Length=16781886 Score = 86.0 bits (94), Expect = 4e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 || |||| ||| | | ||| | ||| || || || ||||| || | ||||||||| Sbjct 16131710 CCCCCTCTCAAACGGAGAACAAGATGGAGAGTTGATTCTTTCTGAACATTGTAATCGGAC 16131651 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 ||| ||||| |||| || | ||| |||||||| | || | | ||| ||||| || Sbjct 16131650 AGAGTTCTCCCGTCCTCGAGTTGCTTGCCAGCAAAGATGAGCCTCTGCTGGTCTGAGGGG 16131591 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 || ||||||||||| |||||| || || | || || ||||| | || || Sbjct 16131590 ATGCCTTCCTTGTCCTGAATTTTTGCCTTGACGTTCTCAATTGTATCAGAGGTCTCAACC 16131531 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || | || ||||| || || || || || || |||||||| ||||| Sbjct 16131530 TCCAGAGTTATGGTCTTTCCGGTAAGGGTCTTGACAAAAATCTGCAT 16131484 Score = 86.0 bits (94), Expect = 4e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 || |||| ||| | | ||| | ||| || || || ||||| || | ||||||||| Sbjct 16199514 CCCCCTCTCAAACGGAGAACAAGATGGAGAGTTGATTCTTTCTGAACATTGTAATCGGAC 16199455 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 ||| ||||| |||| || | ||| |||||||| | || | | ||| ||||| || Sbjct 16199454 AGAGTTCTCCCGTCCTCGAGTTGCTTGCCAGCAAAGATGAGCCTCTGCTGGTCTGAGGGG 16199395 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 || ||||||||||| |||||| || || | || || ||||| | || || Sbjct 16199394 ATGCCTTCCTTGTCCTGAATTTTTGCCTTGACGTTCTCAATTGTATCAGAGGTCTCAACC 16199335 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || | || ||||| || || || || || || |||||||| ||||| Sbjct 16199334 TCCAGAGTTATGGTCTTTCCGGTAAGGGTCTTGACAAAAATCTGCAT 16199288 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357378370967765