Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ananas_20comosus_20[refseq_20GCF_5F001540865.1_202016-03-14] 3,129 sequences; 382,055,938 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq1443 102 7e-17 seq12 100 3e-16 seq10 95.1 1e-14 seq3 93.3 4e-14 seq7 91.5 1e-13 seq8 86.0 6e-12 >seq1443 Length=10899 Score = 102 bits (112), Expect = 7e-17 Identities = 161/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || ||||| | | || || || ||||| || ||||| ||||| || || || Sbjct 8405 ATGCCGCCACGGAGACGGAGGACGAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCC 8464 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 || || || ||||| || || || ||| | ||||| || ||||||||||| Sbjct 8465 GCGAGAGTGCGGCCGTCCTCCAACTGCTTGCCGGCGAAGATCAACCGCTGCTGGTCCGGG 8524 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 || || || || || || || ||||| |||| || | ||||||||| |||||| Sbjct 8525 GGGATCCCCTCCTTGTCCTGGATTTTGGCCTTGACATTGTCGATGGTGTCGGACGACTCG 8584 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 || ||||| || | || |||||||| || || || || || ||||||||| Sbjct 8585 ACCTCGAGGGTGATGGTCTTGCCGGTCAGGGTCTTGACGAAGATTTGCATC 8635 Score = 96.9 bits (106), Expect = 3e-15 Identities = 164/238 (69%), Gaps = 0/238 (0%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || ||||| | | ||| || || ||||| || ||||| ||||| || || || Sbjct 8177 ATGCCGCCACGGAGACGGAGCACGAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCC 8236 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | || || ||||| || || |||||| | |||| || ||||||||||| Sbjct 8237 GCAAGAGTGCGGCCGTCCTCCAACTGCTTGCCTGCGAAGATCAGACGCTGCTGGTCCGGG 8296 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 || || || || || || || ||||| |||| || | ||||||||| |||||| Sbjct 8297 GGGATCCCCTCCTTGTCCTGGATTTTGGCCTTGACATTGTCGATGGTGTCGGAGGACTCG 8356 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATCGCGCGAC 45348 || ||||| || | || |||||||| || || || || || || ||||| ||| || Sbjct 8357 ACCTCGAGGGTGATGGTCTTGCCGGTCAGGGTCTTGACGAAGATCTGCATGCCGCCAC 8414 Score = 89.7 bits (98), Expect = 5e-13 Identities = 163/236 (69%), Gaps = 2/236 (1%) Strand=Plus/Plus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 || ||||| || | | || || || || ||||||||||| ||||| || || || Sbjct 7952 CCACCGCGCAGGCGAAGGACGAGGTGGAGGGTTGATTCCTTCTGGATGTTGTAGTCCGCC 8011 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | || || ||||| || || || || | || | || |||||||||||||| Sbjct 8012 AGAGTGCGGCCGTCCTCCAACTGCTTACCGGCAAAGATGAGCCGCTGCTGGTCCGGCGGG 8071 Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGAC 45292 ||||| || || || || || || ||||| || | || | |||||||| |||||||| Sbjct 8072 ATGCCCTCCTTGTCCTGGATCTTAGCTTTGA-CGTTGTCGATCGTGTCGGAGGACTCGAC 8130 Query 45293 TTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATCGCGCGAC 45348 ||||| || | || |||||||| || || || || || || ||||| ||| || Sbjct 8131 CTCGAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCATGCCGCCAC 8186 >seq12 Length=12612916 Score = 100 bits (110), Expect = 3e-16 Identities = 165/238 (69%), Gaps = 0/238 (0%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || ||||| | | ||| || || ||||| || ||||| ||||| || || || Sbjct 12401016 ATGCCGCCACGGAGACGGAGCACGAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCT 12400957 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | || | || ||||| || || || ||| | ||||| || ||||||||||| Sbjct 12400956 GCAAGAGTCCGACCGTCCTCCAACTGCTTGCCGGCGAAGATCAACCGCTGCTGGTCCGGG 12400897 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 || || || || || || || ||||| |||| || | ||||||||| |||||| Sbjct 12400896 GGGATCCCCTCCTTGTCCTGGATTTTGGCCTTGACATTGTCGATGGTGTCGGAGGACTCG 12400837 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATCGCGCGAC 45348 || ||||| || | || |||||||| || || || || || || ||||| ||| || Sbjct 12400836 ACCTCGAGGGTGATGGTCTTGCCGGTCAGGGTCTTGACGAAGATCTGCATGCCGCCAC 12400779 Score = 96.9 bits (106), Expect = 3e-15 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || ||||| | | || || || ||||| || ||||| ||||| || || || Sbjct 12400788 ATGCCGCCACGGAGACGGAGGACGAGGTGAAGCGTCGACTCCTTCTGGATGTTGTAGTCC 12400729 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 || ||| || ||||| || || || ||| | ||||| || ||||||||||| Sbjct 12400728 GCGAGGGTCCGGCCGTCCTCCAACTGCTTGCCGGCGAAGATCAACCGCTGCTGGTCCGGA 12400669 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 || || || || || || || ||||| || | || | ||||||||| |||||| Sbjct 12400668 GGGATCCCCTCCTTGTCCTGGATTTTGGCCTTAACATTGTCGATGGTGTCGGACGACTCG 12400609 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 || ||||| || | || ||||| || || || || || || ||||||||| Sbjct 12400608 ACCTCGAGGGTGATGGTCTTGCCAGTCAGGGTCTTGACGAAGATTTGCATC 12400558 Score = 96.9 bits (106), Expect = 3e-15 Identities = 164/238 (69%), Gaps = 0/238 (0%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || ||||| | | ||| || || ||||| || ||||| ||||| || || || Sbjct 12401244 ATGCCGCCACGGAGACGGAGCACGAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCC 12401185 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | || || ||||| || || || ||| | |||| || |||||||||||| Sbjct 12401184 GCCAGAGTGCGGCCGTCCTCCAACTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCCGGC 12401125 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 || || || || || || || |||||| || | || | ||||||||| |||||| Sbjct 12401124 GGGATCCCCTCCTTGTCCTGGATTTTTGCCTTAACATTGTCGATGGTGTCGGAGGACTCG 12401065 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATCGCGCGAC 45348 || ||||| || | || |||||||| || || || || || || ||||| ||| || Sbjct 12401064 ACCTCGAGGGTGATGGTCTTGCCGGTCAGGGTCTTGACGAAGATCTGCATGCCGCCAC 12401007 >seq10 Length=13112115 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 || ||||| || | | ||| ||||| || || ||||||||||| ||||| || || Sbjct 3654266 CCGCCGCGAAGACGAAGCACGAGATGAAGGGTGGATTCCTTTTGAATATTGTAGTCCGAT 3654325 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | | | ||| |||||||| || |||||| | |||| || |||||||| || || Sbjct 3654326 AAGCACCGATCATCCTCCAATTGCTTCCCTGCGAAGATCAGCCGCTGCTGGTCAGGAGGG 3654385 Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACT 45293 ||||| || || || || || || || | | ||||||||||| |||||| Sbjct 3654386 ATGCCCTCCTTGTCCTGGATCTTCGACTTCACATTGGCAACGGTGTCGGAGCTCTCGACC 3654445 Query 45294 TCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 |||||||| | || || ||||| || || || || || || ||||| Sbjct 3654446 TCGAGAGTGATGGTCTTTCCGGTGAGGGTCTTCACGAAGATCTGCAT 3654492 >seq3 Length=16781886 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 ||||| |||||||| | | || | ||| || || || ||||||||||| || || || Sbjct 16131941 ATTCCACCGCGGAGGCGAAGAACCAAATGAAGGGTGGACTCCTTTTGGATGTTGTACTCT 16131882 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| ||| |||||||| || || || |||| | || ||||| || || Sbjct 16131881 GATAAGGTCCGGCCATCCTCCAATTGCTTCCCAGCAAATATGAGCCGCTGCTGATCGGGA 16131822 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 | || |||||||| ||||||||||| || | ||| | ||||| || ||| Sbjct 16131821 AGGATTCCTTCTTTGTCTTGAATTTTACCCTTCAGGTTTTCAATTGTGTCAGAGCTCTCA 16131762 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 || |||||||| | || || || || || || || |||||||| |||||| Sbjct 16131761 ACCTCGAGAGTGATGGTCTTTCCAGTGAGGGTCTTCACAAAAATCTGCATC 16131711 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 ||||| |||||||| | | || | ||| || || || ||||||||||| || || || Sbjct 16199745 ATTCCACCGCGGAGGCGAAGAACCAAATGAAGGGTGGACTCCTTTTGGATGTTGTACTCT 16199686 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| ||| |||||||| || || || |||| | || ||||| || || Sbjct 16199685 GATAAGGTCCGGCCATCCTCCAATTGCTTCCCAGCAAATATGAGCCGCTGCTGATCGGGA 16199626 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 | || |||||||| ||||||||||| || | ||| | ||||| || ||| Sbjct 16199625 AGGATTCCTTCTTTGTCTTGAATTTTACCCTTCAGGTTTTCAATTGTGTCAGAGCTCTCA 16199566 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 || |||||||| | || || || || || || || |||||||| |||||| Sbjct 16199565 ACCTCGAGAGTGATGGTCTTTCCAGTGAGGGTCTTCACAAAAATCTGCATC 16199515 >seq7 Length=14728688 Score = 91.5 bits (100), Expect = 1e-13 Identities = 153/219 (70%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 45123 AGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTA 45182 ||||| | ||| || || || || |||||||||||||| || || ||| || ||| Sbjct 13849872 AGCCTGAGCACGAGGTGGAGGGTGGATTCCTTTTGGATGTTGTAGTCGGCGAGGGTGCGC 13849813 Query 45183 GAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCT 45242 || || | || || || || | || | | |||||||||||| || ||||| ||| Sbjct 13849812 CCGTCCTCGAGCTGCTTCCCGGCAAAGATGAGCCTTTGCTGGTCCGGGGGGATGCCCTCT 13849753 Query 45243 TTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGT 45301 || || || || || || | || | || | ||||||||| |||||| ||||| || Sbjct 13849752 TTGTCCTGGATCTTGGCCTTCA-CGTTGTCGATGGTGTCGGAGCTCTCGACCTCGAGGGT 13849694 Query 45302 AACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 | ||| || || ||||| ||||| || || || ||||| Sbjct 13849693 GATCGTCTTCCCCGTTAGGGTTTTGACGAAGATCTGCAT 13849655 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || |||||||| | | ||| || || || || |||||||| ||||| || || ||| Sbjct 13850340 ATACCACCGCGGAGGCGGAGCACGAGGTGAAGGGTGGATTCCTTCTGGATGTTGTAGTCG 13850281 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 || ||| || || | || || ||||| | |||| || ||||||||||| Sbjct 13850280 GCGAGGGTGCGGCCGTCCTCGAGCTGCTTACCTGCAAAGATCAGACGCTGCTGGTCCGGT 13850221 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 || || || || || || || || || |||| || | ||||||||| |||| Sbjct 13850220 GGGATCCCCTCCTTGTCCTGGATCTTCGCCTTGACATTGTCGATGGTGTCGGAGCTCTCG 13850161 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || ||||| || | ||| |||||||| || || || || || || ||||| Sbjct 13850160 ACCTCGAGGGTGATCGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 13850111 Score = 82.4 bits (90), Expect = 7e-11 Identities = 159/232 (69%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || |||||||| | | || || || || || |||||||| ||||| || || ||| Sbjct 13850112 ATGCCACCGCGGAGGCGGAGGACGAGGTGGAGGGTGGATTCCTTCTGGATGTTGTAGTCG 13850053 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 || ||| || || | || || || ||| | || | || ||||||||||| Sbjct 13850052 GCGAGGGTGCGTCCGTCCTCGAGCTGCTTCCCGGCGAAGATGAGACGCTGCTGGTCCGGG 13849993 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 || ||||| || || || || || || || | || | || | ||||||||| ||| Sbjct 13849992 GGGATGCCCTCCTTGTCCTGGATCTTGGCCTTCA-CGTTGTCGATGGTGTCGGAGCTCTC 13849934 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 ||| ||||| || | ||| || || ||||| || || || || || |||||| Sbjct 13849933 GACCTCGAGGGTGATCGTCTTCCCCGTTAGGGTCTTGACGAAGATCTGCATC 13849882 >seq8 Length=13970067 Score = 86.0 bits (94), Expect = 6e-12 Identities = 158/232 (68%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 || || ||||| | | || || || || || |||||||| ||||| || ||||| Sbjct 10823268 CCACCACGGAGGCGGAGGACGAGGTGAAGGGTGGATTCCTTCTGGATGTTGTAATCCGCC 10823327 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | ||| ||| || | || || || ||| | ||||| || ||||||||||||||| Sbjct 10823328 AGGGTGCGGCCATCCTCAAGCTGCTTCCCAGCGAAGATCAAACGCTGCTGGTCCGGCGGA 10823387 Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACT 45293 || || || || || ||||| || || | || | || ||||| ||| || Sbjct 10823388 ATCCCCTCCTTGTCCTGAATCTTAGCCTTCACATTATCAATAGTATCGGAGCTCTCAACC 10823447 Query 45294 TCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATCGCGC 45345 || | || | ||| |||||||| || || || ||||| ||||||||| ||| Sbjct 10823448 TCCAAGGTGATCGTCTTGCCGGTGAGGGTCTTGACAAAGATTTGCATCCCGC 10823499 Score = 82.4 bits (90), Expect = 7e-11 Identities = 149/218 (68%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 45123 AGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTA 45182 ||||||||||| || || || || || || || ||||| || ||||| | || Sbjct 10823733 AGCCTCAACACGAGGTGGAGGGTGGACTCTTTCTGGATGTTGTAATCCGCAAGTGTGCGG 10823792 Query 45183 GAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCT 45242 ||| || | || || || ||| | |||| || ||||| ||||| |||||||| || Sbjct 10823793 CCATCCTCGAGCTGCTTCCCGGCGAAGATCAGACGCTGCTGATCCGGGGGAATGCCCTCC 10823852 Query 45243 TTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTA 45302 ||||| ||||| || |||| || | ||||||||| ||| || || || ||| Sbjct 10823853 TTATCCTGAATCTTGGCCTTGACATTATCGATGGTGTCGGAGCTCTCCACCTCAAGGGTA 10823912 Query 45303 ACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 | || || || || || || || || ||||| ||||| Sbjct 10823913 ATAGTCTTACCCGTGAGGGTCTTCACGAAAATCTGCAT 10823950 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451985521024840