Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ananas_20comosus_20[refseq_20GCF_5F001540865.1_202016-03-14]
3,129 sequences; 382,055,938 total letters
Query= NC_012639.1
Length=141291
Score E
Sequences producing significant alignments: (Bits) Value
seq1443 102 7e-17
seq12 100 3e-16
seq10 95.1 1e-14
seq3 93.3 4e-14
seq7 91.5 1e-13
seq8 86.0 6e-12
>seq1443
Length=10899
Score = 102 bits (112), Expect = 7e-17
Identities = 161/231 (70%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170
|| || || ||||| | | || || || ||||| || ||||| ||||| || || ||
Sbjct 8405 ATGCCGCCACGGAGACGGAGGACGAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCC 8464
Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230
|| || || ||||| || || || ||| | ||||| || |||||||||||
Sbjct 8465 GCGAGAGTGCGGCCGTCCTCCAACTGCTTGCCGGCGAAGATCAACCGCTGCTGGTCCGGG 8524
Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290
|| || || || || || || ||||| |||| || | ||||||||| ||||||
Sbjct 8525 GGGATCCCCTCCTTGTCCTGGATTTTGGCCTTGACATTGTCGATGGTGTCGGACGACTCG 8584
Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341
|| ||||| || | || |||||||| || || || || || |||||||||
Sbjct 8585 ACCTCGAGGGTGATGGTCTTGCCGGTCAGGGTCTTGACGAAGATTTGCATC 8635
Score = 96.9 bits (106), Expect = 3e-15
Identities = 164/238 (69%), Gaps = 0/238 (0%)
Strand=Plus/Plus
Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170
|| || || ||||| | | ||| || || ||||| || ||||| ||||| || || ||
Sbjct 8177 ATGCCGCCACGGAGACGGAGCACGAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCC 8236
Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230
| || || ||||| || || |||||| | |||| || |||||||||||
Sbjct 8237 GCAAGAGTGCGGCCGTCCTCCAACTGCTTGCCTGCGAAGATCAGACGCTGCTGGTCCGGG 8296
Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290
|| || || || || || || ||||| |||| || | ||||||||| ||||||
Sbjct 8297 GGGATCCCCTCCTTGTCCTGGATTTTGGCCTTGACATTGTCGATGGTGTCGGAGGACTCG 8356
Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATCGCGCGAC 45348
|| ||||| || | || |||||||| || || || || || || ||||| ||| ||
Sbjct 8357 ACCTCGAGGGTGATGGTCTTGCCGGTCAGGGTCTTGACGAAGATCTGCATGCCGCCAC 8414
Score = 89.7 bits (98), Expect = 5e-13
Identities = 163/236 (69%), Gaps = 2/236 (1%)
Strand=Plus/Plus
Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173
|| ||||| || | | || || || || ||||||||||| ||||| || || ||
Sbjct 7952 CCACCGCGCAGGCGAAGGACGAGGTGGAGGGTTGATTCCTTCTGGATGTTGTAGTCCGCC 8011
Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233
| || || ||||| || || || || | || | || ||||||||||||||
Sbjct 8012 AGAGTGCGGCCGTCCTCCAACTGCTTACCGGCAAAGATGAGCCGCTGCTGGTCCGGCGGG 8071
Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGAC 45292
||||| || || || || || || ||||| || | || | |||||||| ||||||||
Sbjct 8072 ATGCCCTCCTTGTCCTGGATCTTAGCTTTGA-CGTTGTCGATCGTGTCGGAGGACTCGAC 8130
Query 45293 TTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATCGCGCGAC 45348
||||| || | || |||||||| || || || || || || ||||| ||| ||
Sbjct 8131 CTCGAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCATGCCGCCAC 8186
>seq12
Length=12612916
Score = 100 bits (110), Expect = 3e-16
Identities = 165/238 (69%), Gaps = 0/238 (0%)
Strand=Plus/Minus
Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170
|| || || ||||| | | ||| || || ||||| || ||||| ||||| || || ||
Sbjct 12401016 ATGCCGCCACGGAGACGGAGCACGAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCT 12400957
Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230
| || | || ||||| || || || ||| | ||||| || |||||||||||
Sbjct 12400956 GCAAGAGTCCGACCGTCCTCCAACTGCTTGCCGGCGAAGATCAACCGCTGCTGGTCCGGG 12400897
Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290
|| || || || || || || ||||| |||| || | ||||||||| ||||||
Sbjct 12400896 GGGATCCCCTCCTTGTCCTGGATTTTGGCCTTGACATTGTCGATGGTGTCGGAGGACTCG 12400837
Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATCGCGCGAC 45348
|| ||||| || | || |||||||| || || || || || || ||||| ||| ||
Sbjct 12400836 ACCTCGAGGGTGATGGTCTTGCCGGTCAGGGTCTTGACGAAGATCTGCATGCCGCCAC 12400779
Score = 96.9 bits (106), Expect = 3e-15
Identities = 160/231 (69%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170
|| || || ||||| | | || || || ||||| || ||||| ||||| || || ||
Sbjct 12400788 ATGCCGCCACGGAGACGGAGGACGAGGTGAAGCGTCGACTCCTTCTGGATGTTGTAGTCC 12400729
Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230
|| ||| || ||||| || || || ||| | ||||| || |||||||||||
Sbjct 12400728 GCGAGGGTCCGGCCGTCCTCCAACTGCTTGCCGGCGAAGATCAACCGCTGCTGGTCCGGA 12400669
Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290
|| || || || || || || ||||| || | || | ||||||||| ||||||
Sbjct 12400668 GGGATCCCCTCCTTGTCCTGGATTTTGGCCTTAACATTGTCGATGGTGTCGGACGACTCG 12400609
Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341
|| ||||| || | || ||||| || || || || || || |||||||||
Sbjct 12400608 ACCTCGAGGGTGATGGTCTTGCCAGTCAGGGTCTTGACGAAGATTTGCATC 12400558
Score = 96.9 bits (106), Expect = 3e-15
Identities = 164/238 (69%), Gaps = 0/238 (0%)
Strand=Plus/Minus
Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170
|| || || ||||| | | ||| || || ||||| || ||||| ||||| || || ||
Sbjct 12401244 ATGCCGCCACGGAGACGGAGCACGAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCC 12401185
Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230
| || || ||||| || || || ||| | |||| || ||||||||||||
Sbjct 12401184 GCCAGAGTGCGGCCGTCCTCCAACTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCCGGC 12401125
Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290
|| || || || || || || |||||| || | || | ||||||||| ||||||
Sbjct 12401124 GGGATCCCCTCCTTGTCCTGGATTTTTGCCTTAACATTGTCGATGGTGTCGGAGGACTCG 12401065
Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATCGCGCGAC 45348
|| ||||| || | || |||||||| || || || || || || ||||| ||| ||
Sbjct 12401064 ACCTCGAGGGTGATGGTCTTGCCGGTCAGGGTCTTGACGAAGATCTGCATGCCGCCAC 12401007
>seq10
Length=13112115
Score = 95.1 bits (104), Expect = 1e-14
Identities = 157/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173
|| ||||| || | | ||| ||||| || || ||||||||||| ||||| || ||
Sbjct 3654266 CCGCCGCGAAGACGAAGCACGAGATGAAGGGTGGATTCCTTTTGAATATTGTAGTCCGAT 3654325
Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233
| | | ||| |||||||| || |||||| | |||| || |||||||| || ||
Sbjct 3654326 AAGCACCGATCATCCTCCAATTGCTTCCCTGCGAAGATCAGCCGCTGCTGGTCAGGAGGG 3654385
Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACT 45293
||||| || || || || || || || | | ||||||||||| ||||||
Sbjct 3654386 ATGCCCTCCTTGTCCTGGATCTTCGACTTCACATTGGCAACGGTGTCGGAGCTCTCGACC 3654445
Query 45294 TCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340
|||||||| | || || ||||| || || || || || || |||||
Sbjct 3654446 TCGAGAGTGATGGTCTTTCCGGTGAGGGTCTTCACGAAGATCTGCAT 3654492
>seq3
Length=16781886
Score = 93.3 bits (102), Expect = 4e-14
Identities = 159/231 (69%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170
||||| |||||||| | | || | ||| || || || ||||||||||| || || ||
Sbjct 16131941 ATTCCACCGCGGAGGCGAAGAACCAAATGAAGGGTGGACTCCTTTTGGATGTTGTACTCT 16131882
Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230
| ||| ||| |||||||| || || || |||| | || ||||| || ||
Sbjct 16131881 GATAAGGTCCGGCCATCCTCCAATTGCTTCCCAGCAAATATGAGCCGCTGCTGATCGGGA 16131822
Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290
| || |||||||| ||||||||||| || | ||| | ||||| || |||
Sbjct 16131821 AGGATTCCTTCTTTGTCTTGAATTTTACCCTTCAGGTTTTCAATTGTGTCAGAGCTCTCA 16131762
Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341
|| |||||||| | || || || || || || || |||||||| ||||||
Sbjct 16131761 ACCTCGAGAGTGATGGTCTTTCCAGTGAGGGTCTTCACAAAAATCTGCATC 16131711
Score = 93.3 bits (102), Expect = 4e-14
Identities = 159/231 (69%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170
||||| |||||||| | | || | ||| || || || ||||||||||| || || ||
Sbjct 16199745 ATTCCACCGCGGAGGCGAAGAACCAAATGAAGGGTGGACTCCTTTTGGATGTTGTACTCT 16199686
Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230
| ||| ||| |||||||| || || || |||| | || ||||| || ||
Sbjct 16199685 GATAAGGTCCGGCCATCCTCCAATTGCTTCCCAGCAAATATGAGCCGCTGCTGATCGGGA 16199626
Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290
| || |||||||| ||||||||||| || | ||| | ||||| || |||
Sbjct 16199625 AGGATTCCTTCTTTGTCTTGAATTTTACCCTTCAGGTTTTCAATTGTGTCAGAGCTCTCA 16199566
Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341
|| |||||||| | || || || || || || || |||||||| ||||||
Sbjct 16199565 ACCTCGAGAGTGATGGTCTTTCCAGTGAGGGTCTTCACAAAAATCTGCATC 16199515
>seq7
Length=14728688
Score = 91.5 bits (100), Expect = 1e-13
Identities = 153/219 (70%), Gaps = 2/219 (1%)
Strand=Plus/Minus
Query 45123 AGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTA 45182
||||| | ||| || || || || |||||||||||||| || || ||| || |||
Sbjct 13849872 AGCCTGAGCACGAGGTGGAGGGTGGATTCCTTTTGGATGTTGTAGTCGGCGAGGGTGCGC 13849813
Query 45183 GAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCT 45242
|| || | || || || || | || | | |||||||||||| || ||||| |||
Sbjct 13849812 CCGTCCTCGAGCTGCTTCCCGGCAAAGATGAGCCTTTGCTGGTCCGGGGGGATGCCCTCT 13849753
Query 45243 TTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGT 45301
|| || || || || || | || | || | ||||||||| |||||| ||||| ||
Sbjct 13849752 TTGTCCTGGATCTTGGCCTTCA-CGTTGTCGATGGTGTCGGAGCTCTCGACCTCGAGGGT 13849694
Query 45302 AACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340
| ||| || || ||||| ||||| || || || |||||
Sbjct 13849693 GATCGTCTTCCCCGTTAGGGTTTTGACGAAGATCTGCAT 13849655
Score = 91.5 bits (100), Expect = 1e-13
Identities = 158/230 (69%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170
|| || |||||||| | | ||| || || || || |||||||| ||||| || || |||
Sbjct 13850340 ATACCACCGCGGAGGCGGAGCACGAGGTGAAGGGTGGATTCCTTCTGGATGTTGTAGTCG 13850281
Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230
|| ||| || || | || || ||||| | |||| || |||||||||||
Sbjct 13850280 GCGAGGGTGCGGCCGTCCTCGAGCTGCTTACCTGCAAAGATCAGACGCTGCTGGTCCGGT 13850221
Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290
|| || || || || || || || || |||| || | ||||||||| ||||
Sbjct 13850220 GGGATCCCCTCCTTGTCCTGGATCTTCGCCTTGACATTGTCGATGGTGTCGGAGCTCTCG 13850161
Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340
|| ||||| || | ||| |||||||| || || || || || || |||||
Sbjct 13850160 ACCTCGAGGGTGATCGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 13850111
Score = 82.4 bits (90), Expect = 7e-11
Identities = 159/232 (69%), Gaps = 2/232 (1%)
Strand=Plus/Minus
Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170
|| || |||||||| | | || || || || || |||||||| ||||| || || |||
Sbjct 13850112 ATGCCACCGCGGAGGCGGAGGACGAGGTGGAGGGTGGATTCCTTCTGGATGTTGTAGTCG 13850053
Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230
|| ||| || || | || || || ||| | || | || |||||||||||
Sbjct 13850052 GCGAGGGTGCGTCCGTCCTCGAGCTGCTTCCCGGCGAAGATGAGACGCTGCTGGTCCGGG 13849993
Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289
|| ||||| || || || || || || || | || | || | ||||||||| |||
Sbjct 13849992 GGGATGCCCTCCTTGTCCTGGATCTTGGCCTTCA-CGTTGTCGATGGTGTCGGAGCTCTC 13849934
Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341
||| ||||| || | ||| || || ||||| || || || || || ||||||
Sbjct 13849933 GACCTCGAGGGTGATCGTCTTCCCCGTTAGGGTCTTGACGAAGATCTGCATC 13849882
>seq8
Length=13970067
Score = 86.0 bits (94), Expect = 6e-12
Identities = 158/232 (68%), Gaps = 0/232 (0%)
Strand=Plus/Plus
Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173
|| || ||||| | | || || || || || |||||||| ||||| || |||||
Sbjct 10823268 CCACCACGGAGGCGGAGGACGAGGTGAAGGGTGGATTCCTTCTGGATGTTGTAATCCGCC 10823327
Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233
| ||| ||| || | || || || ||| | ||||| || |||||||||||||||
Sbjct 10823328 AGGGTGCGGCCATCCTCAAGCTGCTTCCCAGCGAAGATCAAACGCTGCTGGTCCGGCGGA 10823387
Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACT 45293
|| || || || || ||||| || || | || | || ||||| ||| ||
Sbjct 10823388 ATCCCCTCCTTGTCCTGAATCTTAGCCTTCACATTATCAATAGTATCGGAGCTCTCAACC 10823447
Query 45294 TCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATCGCGC 45345
|| | || | ||| |||||||| || || || ||||| ||||||||| |||
Sbjct 10823448 TCCAAGGTGATCGTCTTGCCGGTGAGGGTCTTGACAAAGATTTGCATCCCGC 10823499
Score = 82.4 bits (90), Expect = 7e-11
Identities = 149/218 (68%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 45123 AGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTA 45182
||||||||||| || || || || || || || ||||| || ||||| | ||
Sbjct 10823733 AGCCTCAACACGAGGTGGAGGGTGGACTCTTTCTGGATGTTGTAATCCGCAAGTGTGCGG 10823792
Query 45183 GAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCT 45242
||| || | || || || ||| | |||| || ||||| ||||| |||||||| ||
Sbjct 10823793 CCATCCTCGAGCTGCTTCCCGGCGAAGATCAGACGCTGCTGATCCGGGGGAATGCCCTCC 10823852
Query 45243 TTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTA 45302
||||| ||||| || |||| || | ||||||||| ||| || || || |||
Sbjct 10823853 TTATCCTGAATCTTGGCCTTGACATTATCGATGGTGTCGGAGCTCTCCACCTCAAGGGTA 10823912
Query 45303 ACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340
| || || || || || || || || ||||| |||||
Sbjct 10823913 ATAGTCTTACCCGTGAGGGTCTTCACGAAAATCTGCAT 10823950
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 451985521024840
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