Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ananas_20comosus_20[refseq_20GCF_5F001540865.1_202016-03-14] 3,129 sequences; 382,055,938 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq433 132 6e-26 seq21 132 6e-26 seq2 120 4e-22 seq22 118 1e-21 seq336 111 2e-19 seq300 111 2e-19 seq647 98.7 1e-15 >seq433 Length=30188 Score = 132 bits (146), Expect = 6e-26 Identities = 120/151 (79%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 127531 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACC 127590 |||||| |||||||| ||||||||||| || || |||||| || || |||||||| || Sbjct 24231 GTGGAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCGGGCATGAGGCC 24172 Query 127591 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACA 127650 |||||||| | |||||| || || || || ||||| |||||||||| ||||| || || Sbjct 24171 GCGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCGGAGAAGAAGACGCCCTCGACGCA 24112 Query 127651 CGCGAACGCAAATAGACGCTCGGCAAAGGAG 127681 ||||| || | || |||||||| |||||| Sbjct 24111 GGCGAAGGCGACGAGGCGCTCGGCGAAGGAG 24081 >seq21 Length=10645290 Score = 132 bits (146), Expect = 6e-26 Identities = 120/151 (79%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 127531 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACC 127590 |||||| |||||||| ||||||||||| || || |||||| || || |||||||| || Sbjct 999452 GTGGAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCGGGCATGAGGCC 999393 Query 127591 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACA 127650 |||||||| | |||||| || || || || ||||| |||||||||| ||||| || || Sbjct 999392 GCGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCGGAGAAGAAGACGCCCTCGACGCA 999333 Query 127651 CGCGAACGCAAATAGACGCTCGGCAAAGGAG 127681 ||||| || | || |||||||| |||||| Sbjct 999332 GGCGAAGGCGACGAGGCGCTCGGCGAAGGAG 999302 >seq2 Length=17334668 Score = 120 bits (132), Expect = 4e-22 Identities = 120/155 (77%), Gaps = 3/155 (2%) Strand=Plus/Minus Query 127531 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACC 127590 |||||| |||||||| ||||||||||| || || |||||| || || |||||||| || Sbjct 14397001 GTGGAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGCCCGGGCATGAGGCC 14396942 Query 127591 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACA 127650 |||||||| | |||||| || || || | ||||| ||||||||| ||||| || || Sbjct 14396941 ACGCTTCTTGAGCCAGAAGATGGCTCAGCAGGAGCCGGAGAAGAAG---CCCTCGACGCA 14396885 Query 127651 CGCGAACGCAAATAGACGCTCGGCAAAGGAGCGGG 127685 ||||| || | || |||||||| || |||| || Sbjct 14396884 GGCGAAGGCGACGAGGCGCTCGGCGAAAGAGCAGG 14396850 >seq22 Length=10398566 Score = 118 bits (130), Expect = 1e-21 Identities = 287/423 (68%), Gaps = 14/423 (3%) Strand=Plus/Plus Query 12690 ACGGTGATCTTACGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATG 12749 ||||| | || ||||| || || || ||||| | |||||| || || | || | Sbjct 8184938 ACGGTAACCTGGCGATCGAATCGGCCCGGGCGCAACAGGGCGGAATCGAGCACGTCGGGG 8184997 Query 12750 CGGTTCGTCGCCGCGATGACAACGATG-CCCGTCTCGTTATC---GAAGCCATCCATCTC 12805 || || || || || | ||||||| ||| || ||| | ||||||||||||||| Sbjct 8184998 CGATTGGTGGCGGCCAA---AACGATGACCCCGCT-GTTCCCCGAGAAGCCATCCATCTC 8185053 Query 12806 AGTCAAGAGTTGATTGATGGTTTGTTCACGTTCATCATTCGCG-GGCATACCACCCGCAC 12864 ||| | ||| || |||||||| || || || || || || || || | | ||||| | Sbjct 8185054 AGTGAGGAGCTGGTTGATGGTCTGCTCGCGCTCGTCGTTGCCGCCGCCGAGC-CCCGCCC 8185112 Query 12865 TGCGTTGCTTACCGACGGCGTCAATTTCGTCAATGAAAACGATACACGGTTGATTTTCAC 12924 ||| || ||||||||||| || ||||| ||||| ||||| || || | || || Sbjct 8185113 CGCGCTGGCGGCCGACGGCGTCGATCTCGTCGATGAAGACGATGCA-GGGGGCCTTGGAC 8185171 Query 12925 -GGGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACA 12983 ||| || |||| || || || | ||| ||||| || || || | ||| || Sbjct 8185172 TTGGCCTTCTCGAAGAGGTCCCGGACGCGGGAGGCGCCGACGCCGACGAAGAGCTCGACG 8185231 Query 12984 AAATTGGCGGCGGAACATTGGATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCG 13043 || | || ||||| || || |||||||||| || || || |||| ||| |||||| Sbjct 8185232 AATTCGGAGGCGGCGCAGGAGAAGAAGGGGACGCCGGCCTCGCCGGCGACGGCGCGGGCG 8185291 Query 13044 AGGAGGGTCTTCCCCGTCCCTGGTTTCCCCGCGAGAAGGGCACCACGT-GGGATCCTGGC 13102 || |||||||| || || || || || |||| | |||| | | | |||||| |||| Sbjct 8185292 AGCAGGGTCTTGCCGGTGCCGGGGGGGCCGACGAGGA-GGCAGCCCTTGGGGATCTTGGC 8185350 Query 13103 ACC 13105 || Sbjct 8185351 GCC 8185353 Score = 82.4 bits (90), Expect = 9e-11 Identities = 119/162 (73%), Gaps = 6/162 (4%) Strand=Plus/Minus Query 176875 AACTGCGAGGGTCTTCGCGGAATCACCCTCCGTCACGATGAGCGTACACTTTCCAGA-TT 176933 ||| ||||| | ||| |||||||| ||||| |||| || | |||||||| |||| || Sbjct 516199 AACAGCGAGAGCCTTAGCGGAATCTCCCTCAGTCAAAATCAAGGTACACTTGTCAGAGTT 516140 Query 176934 GTGCCGTCCCCGCCTTGTTCGCATCGTCCAACTTGGGAATACCAGTAATT-TTGGACT-T 176991 | || ||| || | || ||||| || | || ||||| ||||||||| || | || | Sbjct 516139 CTTCCCTCCG-GCATCATTAGCATCCTCAAGTTTAGGAATTCCAGTAATTCTTTGCCTCT 516081 Query 176992 ACGAGCACCATCTGTCTTCTTGAGTTCCTTCATCTCCTTGAA 177033 || | ||||||||||||| | |||||| ||| |||||| Sbjct 516080 TCGTTC--CATCTGTCTTCTTCAATTCCTTGCTCTGCTTGAA 516041 >seq336 Length=33712 Score = 111 bits (122), Expect = 2e-19 Identities = 118/155 (76%), Gaps = 3/155 (2%) Strand=Plus/Minus Query 127531 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACC 127590 |||||| |||||||| ||||||||||| | || |||||| || || |||||||| || Sbjct 19094 GTGGAGGCCCTCGTCGCGGGAGATGAGCTTGTTGGAGAAGGTGAGCCCGGGCATGAGGCC 19035 Query 127591 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACA 127650 |||||||| | |||||| || || || | ||||| ||||||||| ||||| || || Sbjct 19034 ACGCTTCTTGAGCCAGAAGATGGCTCAGCAGGAGCCGGAGAAGAAG---CCCTCGACGCA 18978 Query 127651 CGCGAACGCAAATAGACGCTCGGCAAAGGAGCGGG 127685 ||||| || | | |||||||| ||| ||| || Sbjct 18977 GGCGAAGGCGACGAAGCGCTCGGCGAAGAAGCAGG 18943 >seq300 Length=35074 Score = 111 bits (122), Expect = 2e-19 Identities = 118/155 (76%), Gaps = 3/155 (2%) Strand=Plus/Plus Query 127531 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACC 127590 |||||| ||||| || ||||||||||| | || |||||| || || |||||||| || Sbjct 28737 GTGGAGGCCCTCATCGCGGGAGATGAGCTTGTTGGAGAAGGTGAGCCCGGGCATGAGGCC 28796 Query 127591 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACA 127650 |||||||| | |||||| || || || | ||||| ||||||||| ||||| || | Sbjct 28797 ACGCTTCTTGAGCCAGAAGATGGCTCAGCAGGAGCCGGAGAAGAAG---CCCTCGACGTA 28853 Query 127651 CGCGAACGCAAATAGACGCTCGGCAAAGGAGCGGG 127685 ||||| || | || |||||||| ||||||| || Sbjct 28854 GGCGAAGGCGACGAGGCGCTCGGCGAAGGAGCAGG 28888 >seq647 Length=24519 Score = 98.7 bits (108), Expect = 1e-15 Identities = 115/155 (74%), Gaps = 3/155 (2%) Strand=Plus/Plus Query 127531 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACC 127590 |||||| |||||||| ||||||||||| | || |||||| || || ||||||| || Sbjct 9977 GTGGAGGCCCTCGTCGCGGGAGATGAGCTTGTTGGAGAAGGTGAGCCCGAGCATGAGGCC 10036 Query 127591 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACA 127650 |||||| | |||||| || || || | ||||| ||||||||| ||||| || || Sbjct 10037 ATTCTTCTTGAGCCAGAAGATGGCTCAGCAGGAGCCGGAGAAGAAG---CCCTCGACGCA 10093 Query 127651 CGCGAACGCAAATAGACGCTCGGCAAAGGAGCGGG 127685 || || || | || |||||||| || |||| || Sbjct 10094 GGCAAAGGCGACGAGGCGCTCGGCGAAAGAGCAGG 10128 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613483204199640