Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ananas_20comosus_20[refseq_20GCF_5F001540865.1_202016-03-14]
3,129 sequences; 382,055,938 total letters
Query= NC_013288.1
Length=191761
Score E
Sequences producing significant alignments: (Bits) Value
seq433 132 6e-26
seq21 132 6e-26
seq2 120 4e-22
seq22 118 1e-21
seq336 111 2e-19
seq300 111 2e-19
seq647 98.7 1e-15
>seq433
Length=30188
Score = 132 bits (146), Expect = 6e-26
Identities = 120/151 (79%), Gaps = 0/151 (0%)
Strand=Plus/Minus
Query 127531 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACC 127590
|||||| |||||||| ||||||||||| || || |||||| || || |||||||| ||
Sbjct 24231 GTGGAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCGGGCATGAGGCC 24172
Query 127591 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACA 127650
|||||||| | |||||| || || || || ||||| |||||||||| ||||| || ||
Sbjct 24171 GCGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCGGAGAAGAAGACGCCCTCGACGCA 24112
Query 127651 CGCGAACGCAAATAGACGCTCGGCAAAGGAG 127681
||||| || | || |||||||| ||||||
Sbjct 24111 GGCGAAGGCGACGAGGCGCTCGGCGAAGGAG 24081
>seq21
Length=10645290
Score = 132 bits (146), Expect = 6e-26
Identities = 120/151 (79%), Gaps = 0/151 (0%)
Strand=Plus/Minus
Query 127531 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACC 127590
|||||| |||||||| ||||||||||| || || |||||| || || |||||||| ||
Sbjct 999452 GTGGAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCGGGCATGAGGCC 999393
Query 127591 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACA 127650
|||||||| | |||||| || || || || ||||| |||||||||| ||||| || ||
Sbjct 999392 GCGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCGGAGAAGAAGACGCCCTCGACGCA 999333
Query 127651 CGCGAACGCAAATAGACGCTCGGCAAAGGAG 127681
||||| || | || |||||||| ||||||
Sbjct 999332 GGCGAAGGCGACGAGGCGCTCGGCGAAGGAG 999302
>seq2
Length=17334668
Score = 120 bits (132), Expect = 4e-22
Identities = 120/155 (77%), Gaps = 3/155 (2%)
Strand=Plus/Minus
Query 127531 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACC 127590
|||||| |||||||| ||||||||||| || || |||||| || || |||||||| ||
Sbjct 14397001 GTGGAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGCCCGGGCATGAGGCC 14396942
Query 127591 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACA 127650
|||||||| | |||||| || || || | ||||| ||||||||| ||||| || ||
Sbjct 14396941 ACGCTTCTTGAGCCAGAAGATGGCTCAGCAGGAGCCGGAGAAGAAG---CCCTCGACGCA 14396885
Query 127651 CGCGAACGCAAATAGACGCTCGGCAAAGGAGCGGG 127685
||||| || | || |||||||| || |||| ||
Sbjct 14396884 GGCGAAGGCGACGAGGCGCTCGGCGAAAGAGCAGG 14396850
>seq22
Length=10398566
Score = 118 bits (130), Expect = 1e-21
Identities = 287/423 (68%), Gaps = 14/423 (3%)
Strand=Plus/Plus
Query 12690 ACGGTGATCTTACGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATG 12749
||||| | || ||||| || || || ||||| | |||||| || || | || |
Sbjct 8184938 ACGGTAACCTGGCGATCGAATCGGCCCGGGCGCAACAGGGCGGAATCGAGCACGTCGGGG 8184997
Query 12750 CGGTTCGTCGCCGCGATGACAACGATG-CCCGTCTCGTTATC---GAAGCCATCCATCTC 12805
|| || || || || | ||||||| ||| || ||| | |||||||||||||||
Sbjct 8184998 CGATTGGTGGCGGCCAA---AACGATGACCCCGCT-GTTCCCCGAGAAGCCATCCATCTC 8185053
Query 12806 AGTCAAGAGTTGATTGATGGTTTGTTCACGTTCATCATTCGCG-GGCATACCACCCGCAC 12864
||| | ||| || |||||||| || || || || || || || || | | ||||| |
Sbjct 8185054 AGTGAGGAGCTGGTTGATGGTCTGCTCGCGCTCGTCGTTGCCGCCGCCGAGC-CCCGCCC 8185112
Query 12865 TGCGTTGCTTACCGACGGCGTCAATTTCGTCAATGAAAACGATACACGGTTGATTTTCAC 12924
||| || ||||||||||| || ||||| ||||| ||||| || || | || ||
Sbjct 8185113 CGCGCTGGCGGCCGACGGCGTCGATCTCGTCGATGAAGACGATGCA-GGGGGCCTTGGAC 8185171
Query 12925 -GGGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACA 12983
||| || |||| || || || | ||| ||||| || || || | ||| ||
Sbjct 8185172 TTGGCCTTCTCGAAGAGGTCCCGGACGCGGGAGGCGCCGACGCCGACGAAGAGCTCGACG 8185231
Query 12984 AAATTGGCGGCGGAACATTGGATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCG 13043
|| | || ||||| || || |||||||||| || || || |||| ||| ||||||
Sbjct 8185232 AATTCGGAGGCGGCGCAGGAGAAGAAGGGGACGCCGGCCTCGCCGGCGACGGCGCGGGCG 8185291
Query 13044 AGGAGGGTCTTCCCCGTCCCTGGTTTCCCCGCGAGAAGGGCACCACGT-GGGATCCTGGC 13102
|| |||||||| || || || || || |||| | |||| | | | |||||| ||||
Sbjct 8185292 AGCAGGGTCTTGCCGGTGCCGGGGGGGCCGACGAGGA-GGCAGCCCTTGGGGATCTTGGC 8185350
Query 13103 ACC 13105
||
Sbjct 8185351 GCC 8185353
Score = 82.4 bits (90), Expect = 9e-11
Identities = 119/162 (73%), Gaps = 6/162 (4%)
Strand=Plus/Minus
Query 176875 AACTGCGAGGGTCTTCGCGGAATCACCCTCCGTCACGATGAGCGTACACTTTCCAGA-TT 176933
||| ||||| | ||| |||||||| ||||| |||| || | |||||||| |||| ||
Sbjct 516199 AACAGCGAGAGCCTTAGCGGAATCTCCCTCAGTCAAAATCAAGGTACACTTGTCAGAGTT 516140
Query 176934 GTGCCGTCCCCGCCTTGTTCGCATCGTCCAACTTGGGAATACCAGTAATT-TTGGACT-T 176991
| || ||| || | || ||||| || | || ||||| ||||||||| || | || |
Sbjct 516139 CTTCCCTCCG-GCATCATTAGCATCCTCAAGTTTAGGAATTCCAGTAATTCTTTGCCTCT 516081
Query 176992 ACGAGCACCATCTGTCTTCTTGAGTTCCTTCATCTCCTTGAA 177033
|| | ||||||||||||| | |||||| ||| ||||||
Sbjct 516080 TCGTTC--CATCTGTCTTCTTCAATTCCTTGCTCTGCTTGAA 516041
>seq336
Length=33712
Score = 111 bits (122), Expect = 2e-19
Identities = 118/155 (76%), Gaps = 3/155 (2%)
Strand=Plus/Minus
Query 127531 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACC 127590
|||||| |||||||| ||||||||||| | || |||||| || || |||||||| ||
Sbjct 19094 GTGGAGGCCCTCGTCGCGGGAGATGAGCTTGTTGGAGAAGGTGAGCCCGGGCATGAGGCC 19035
Query 127591 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACA 127650
|||||||| | |||||| || || || | ||||| ||||||||| ||||| || ||
Sbjct 19034 ACGCTTCTTGAGCCAGAAGATGGCTCAGCAGGAGCCGGAGAAGAAG---CCCTCGACGCA 18978
Query 127651 CGCGAACGCAAATAGACGCTCGGCAAAGGAGCGGG 127685
||||| || | | |||||||| ||| ||| ||
Sbjct 18977 GGCGAAGGCGACGAAGCGCTCGGCGAAGAAGCAGG 18943
>seq300
Length=35074
Score = 111 bits (122), Expect = 2e-19
Identities = 118/155 (76%), Gaps = 3/155 (2%)
Strand=Plus/Plus
Query 127531 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACC 127590
|||||| ||||| || ||||||||||| | || |||||| || || |||||||| ||
Sbjct 28737 GTGGAGGCCCTCATCGCGGGAGATGAGCTTGTTGGAGAAGGTGAGCCCGGGCATGAGGCC 28796
Query 127591 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACA 127650
|||||||| | |||||| || || || | ||||| ||||||||| ||||| || |
Sbjct 28797 ACGCTTCTTGAGCCAGAAGATGGCTCAGCAGGAGCCGGAGAAGAAG---CCCTCGACGTA 28853
Query 127651 CGCGAACGCAAATAGACGCTCGGCAAAGGAGCGGG 127685
||||| || | || |||||||| ||||||| ||
Sbjct 28854 GGCGAAGGCGACGAGGCGCTCGGCGAAGGAGCAGG 28888
>seq647
Length=24519
Score = 98.7 bits (108), Expect = 1e-15
Identities = 115/155 (74%), Gaps = 3/155 (2%)
Strand=Plus/Plus
Query 127531 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACC 127590
|||||| |||||||| ||||||||||| | || |||||| || || ||||||| ||
Sbjct 9977 GTGGAGGCCCTCGTCGCGGGAGATGAGCTTGTTGGAGAAGGTGAGCCCGAGCATGAGGCC 10036
Query 127591 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACA 127650
|||||| | |||||| || || || | ||||| ||||||||| ||||| || ||
Sbjct 10037 ATTCTTCTTGAGCCAGAAGATGGCTCAGCAGGAGCCGGAGAAGAAG---CCCTCGACGCA 10093
Query 127651 CGCGAACGCAAATAGACGCTCGGCAAAGGAGCGGG 127685
|| || || | || |||||||| || |||| ||
Sbjct 10094 GGCAAAGGCGACGAGGCGCTCGGCGAAAGAGCAGG 10128
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 613483204199640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |