Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ananas_20comosus_20[refseq_20GCF_5F001540865.1_202016-03-14] 3,129 sequences; 382,055,938 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq433 127 3e-24 seq21 127 3e-24 seq2 104 4e-17 seq336 98.7 2e-15 seq300 93.3 7e-14 seq647 91.5 2e-13 seq13 86.0 1e-11 >seq433 Length=30188 Score = 127 bits (140), Expect = 3e-24 Identities = 176/244 (72%), Gaps = 2/244 (1%) Strand=Plus/Minus Query 159917 AGGAGGCACGCAAAGTCGCAGTGCAGTCCCTCGTCCCGAGAGATGAACTCGTTGGACATG 159976 |||||||| || ||||||||||| || |||||||| || ||||||| ||||||||| | | Sbjct 24251 AGGAGGCAGGCGAAGTCGCAGTGGAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAG 24192 Query 159977 ATGAGGCCCGGCATGATCCCACGCGGTTTGAGCCAAAAAATGGCCGCAAAAGCA-CCGCT 160035 ||||||| ||||||| || ||| |||||||| || |||| |||| ||| | ||| Sbjct 24191 GTGAGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGG-CGCAGAAGGAGCCGGA 24133 Query 160036 AAAAAAGATCCCCTCCACGGCCGCAAACGCCACGAGCCTCTCACCAAAAGAGGCGTTGGT 160095 || |||| ||||| ||| || || || ||||| | ||| | || ||||||| || Sbjct 24132 GAAGAAGACGCCCTCGACGCAGGCGAAGGCGACGAGGCGCTCGGCGAAGGAGGCGTCGGG 24073 Query 160096 GTCATGGGTCCACCTTTTGGCCCATTCAGCCTTCTTTGCGATGCACGGCATGCGCTCGAC 160155 | ||| |||| | ||||| | ||||| |||| ||| || | | ||||| Sbjct 24072 GGACTGGATCCAGCGCAGCGCCCACGCGGCCTTGCGGGCGACGCAGGGGACGGTGTCGAC 24013 Query 160156 GGCG 160159 |||| Sbjct 24012 GGCG 24009 >seq21 Length=10645290 Score = 127 bits (140), Expect = 3e-24 Identities = 176/244 (72%), Gaps = 2/244 (1%) Strand=Plus/Minus Query 159917 AGGAGGCACGCAAAGTCGCAGTGCAGTCCCTCGTCCCGAGAGATGAACTCGTTGGACATG 159976 |||||||| || ||||||||||| || |||||||| || ||||||| ||||||||| | | Sbjct 999472 AGGAGGCAGGCGAAGTCGCAGTGGAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAG 999413 Query 159977 ATGAGGCCCGGCATGATCCCACGCGGTTTGAGCCAAAAAATGGCCGCAAAAGCA-CCGCT 160035 ||||||| ||||||| || ||| |||||||| || |||| |||| ||| | ||| Sbjct 999412 GTGAGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGG-CGCAGAAGGAGCCGGA 999354 Query 160036 AAAAAAGATCCCCTCCACGGCCGCAAACGCCACGAGCCTCTCACCAAAAGAGGCGTTGGT 160095 || |||| ||||| ||| || || || ||||| | ||| | || ||||||| || Sbjct 999353 GAAGAAGACGCCCTCGACGCAGGCGAAGGCGACGAGGCGCTCGGCGAAGGAGGCGTCGGG 999294 Query 160096 GTCATGGGTCCACCTTTTGGCCCATTCAGCCTTCTTTGCGATGCACGGCATGCGCTCGAC 160155 | ||| |||| | ||||| | ||||| |||| ||| || | | ||||| Sbjct 999293 GGACTGGATCCAGCGCAGCGCCCACGCGGCCTTGCGGGCGACGCAGGGGACGGTGTCGAC 999234 Query 160156 GGCG 160159 |||| Sbjct 999233 GGCG 999230 >seq2 Length=17334668 Score = 104 bits (114), Expect = 4e-17 Identities = 127/171 (74%), Gaps = 3/171 (2%) Strand=Plus/Minus Query 159917 AGGAGGCACGCAAAGTCGCAGTGCAGTCCCTCGTCCCGAGAGATGAACTCGTTGGACATG 159976 |||||||| || ||||||||||| || |||||||| || ||||||| ||||||||| | | Sbjct 14397021 AGGAGGCAAGCGAAGTCGCAGTGGAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAG 14396962 Query 159977 ATGAGGCCCGGCATGATCCCACGCGGTTTGAGCCAAAAAATGGCCGCAAAAGCACCGCTA 160036 |||| || ||||||| |||||| |||||||| || |||| | || || | || Sbjct 14396961 GTGAGCCCGGGCATGAGGCCACGCTTCTTGAGCCAGAAGATGG-CTCAGCAGGA--GCCG 14396905 Query 160037 AAAAAGATCCCCTCCACGGCCGCAAACGCCACGAGCCTCTCACCAAAAGAG 160087 | |||| ||||| ||| || || || ||||| | ||| | |||||| Sbjct 14396904 GAGAAGAAGCCCTCGACGCAGGCGAAGGCGACGAGGCGCTCGGCGAAAGAG 14396854 >seq336 Length=33712 Score = 98.7 bits (108), Expect = 2e-15 Identities = 84/104 (81%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 159917 AGGAGGCACGCAAAGTCGCAGTGCAGTCCCTCGTCCCGAGAGATGAACTCGTTGGACATG 159976 |||||||| || ||||||||||| || |||||||| || ||||||| || |||||| | | Sbjct 19114 AGGAGGCAGGCGAAGTCGCAGTGGAGGCCCTCGTCGCGGGAGATGAGCTTGTTGGAGAAG 19055 Query 159977 ATGAGGCCCGGCATGATCCCACGCGGTTTGAGCCAAAAAATGGC 160020 |||| || ||||||| |||||| |||||||| || ||||| Sbjct 19054 GTGAGCCCGGGCATGAGGCCACGCTTCTTGAGCCAGAAGATGGC 19011 >seq300 Length=35074 Score = 93.3 bits (102), Expect = 7e-14 Identities = 83/104 (80%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 159917 AGGAGGCACGCAAAGTCGCAGTGCAGTCCCTCGTCCCGAGAGATGAACTCGTTGGACATG 159976 |||||||| || ||||||||||| || ||||| || || ||||||| || |||||| | | Sbjct 28717 AGGAGGCAGGCGAAGTCGCAGTGGAGGCCCTCATCGCGGGAGATGAGCTTGTTGGAGAAG 28776 Query 159977 ATGAGGCCCGGCATGATCCCACGCGGTTTGAGCCAAAAAATGGC 160020 |||| || ||||||| |||||| |||||||| || ||||| Sbjct 28777 GTGAGCCCGGGCATGAGGCCACGCTTCTTGAGCCAGAAGATGGC 28820 >seq647 Length=24519 Score = 91.5 bits (100), Expect = 2e-13 Identities = 124/171 (73%), Gaps = 3/171 (2%) Strand=Plus/Plus Query 159917 AGGAGGCACGCAAAGTCGCAGTGCAGTCCCTCGTCCCGAGAGATGAACTCGTTGGACATG 159976 |||||||| || ||||||||||| || |||||||| || ||||||| || |||||| | | Sbjct 9957 AGGAGGCAGGCGAAGTCGCAGTGGAGGCCCTCGTCGCGGGAGATGAGCTTGTTGGAGAAG 10016 Query 159977 ATGAGGCCCGGCATGATCCCACGCGGTTTGAGCCAAAAAATGGCCGCAAAAGCACCGCTA 160036 |||| || |||||| ||| | |||||||| || |||| | || || | || Sbjct 10017 GTGAGCCCGAGCATGAGGCCATTCTTCTTGAGCCAGAAGATGG-CTCAGCAGGA--GCCG 10073 Query 160037 AAAAAGATCCCCTCCACGGCCGCAAACGCCACGAGCCTCTCACCAAAAGAG 160087 | |||| ||||| ||| ||||| || ||||| | ||| | |||||| Sbjct 10074 GAGAAGAAGCCCTCGACGCAGGCAAAGGCGACGAGGCGCTCGGCGAAAGAG 10124 >seq13 Length=11759267 Score = 86.0 bits (94), Expect = 1e-11 Identities = 123/171 (72%), Gaps = 3/171 (2%) Strand=Plus/Plus Query 159917 AGGAGGCACGCAAAGTCGCAGTGCAGTCCCTCGTCCCGAGAGATGAACTCGTTGGACATG 159976 |||| ||| || ||||||||||| || |||| ||| | |||| || ||||||||| | | Sbjct 9967738 AGGACGCAGGCGAAGTCGCAGTGGAGGCCCTTGTCGTGGGAGACGAGCTCGTTGGAGAAG 9967797 Query 159977 ATGAGGCCCGGCATGATCCCACGCGGTTTGAGCCAAAAAATGGCCGCAAAAGCACCGCTA 160036 |||| || ||||||| |||||| |||||||| || |||| | || || | || Sbjct 9967798 GTGAGCCCGGGCATGAGGCCACGCTTCTTGAGCCAGAAGATGG-CTCAGCAGGA--GCCG 9967854 Query 160037 AAAAAGATCCCCTCCACGGCCGCAAACGCCACGAGCCTCTCACCAAAAGAG 160087 | |||| ||||| ||| || || || ||||| | ||| | |||||| Sbjct 9967855 GAGAAGAAGCCCTCGACGCAGGCGAAGGCGACGAGGCGCTCGGCGAAAGAG 9967905 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795124099492240