Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ananas_20comosus_20[refseq_20GCF_5F001540865.1_202016-03-14] 3,129 sequences; 382,055,938 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq2912 118 4e-21 seq8 118 4e-21 seq20 111 6e-19 seq12 107 8e-18 seq22 102 3e-16 seq2035 95.1 5e-14 seq18 95.1 5e-14 seq3 95.1 5e-14 seq17 89.7 2e-12 seq23 84.2 9e-11 >seq2912 Length=88256 Score = 118 bits (130), Expect = 4e-21 Identities = 182/257 (71%), Gaps = 16/257 (6%) Strand=Plus/Plus Query 451340 GCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGACATATTGCTGGTTTA 451399 || |||||||||||||| || | || |||||||| ||||| ||| || |||||| | Sbjct 55549 GCATATTTCAATGATGCTCAGAGACAGGCAACTAAGGATGCCGGAATAATCGCTGGTCTT 55608 Query 451400 AATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCATATGGACTAGGAAAA 451459 ||||| ||| ||||| || || |||||||| ||||| | |||||||| ||| Sbjct 55609 AATGTAGCTCGGATTATCAACGAGCCTACAGCTGCTGCAATTGCATATGGTTTAG----- 55663 Query 451460 TCAAAAGAAA-CAGAAGaaaaaaaTATTTTAGTATTTGATTTTGGTGGAGGAAC---TCA 451515 | |||||| || || || || ||| | ||||| || ||||||| || || | | Sbjct 55664 --ATAAGAAAGGAGGGGAGAAGAACATTCTCGTATTCGACCTTGGTGGCGGTACATTTGA 55721 Query 451516 TGATA-CTTCTGTACTTTCAATTGAAGATGGGGTATTTGAAGTAAAGGCAACCAATGGTG 451574 || || | ||| | |||| || |||| || ||||| || ||||| ||||||| Sbjct 55722 TGTTAGCATCT----TGACAATCGACAATGGAGTTTTTGAGGTCCTCGCAACAAATGGTG 55777 Query 451575 ATACTCATCTAGGAGGT 451591 |||||||| | |||||| Sbjct 55778 ATACTCATTTGGGAGGT 55794 >seq8 Length=13970067 Score = 118 bits (130), Expect = 4e-21 Identities = 182/257 (71%), Gaps = 16/257 (6%) Strand=Plus/Minus Query 451340 GCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGACATATTGCTGGTTTA 451399 || |||||||||||||| || | || |||||||| ||||| ||| || |||||| | Sbjct 857740 GCATATTTCAATGATGCTCAGAGACAGGCAACTAAGGATGCCGGAATAATCGCTGGTCTT 857681 Query 451400 AATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCATATGGACTAGGAAAA 451459 ||||| ||| ||||| || || |||||||| ||||| | |||||||| ||| Sbjct 857680 AATGTAGCTCGGATTATCAACGAGCCTACAGCTGCTGCAATTGCATATGGTTTAG----- 857626 Query 451460 TCAAAAGAAA-CAGAAGaaaaaaaTATTTTAGTATTTGATTTTGGTGGAGGAAC---TCA 451515 | |||||| || || || || ||| | ||||| || ||||||| || || | | Sbjct 857625 --ATAAGAAAGGAGGGGAGAAGAACATTCTCGTATTCGACCTTGGTGGCGGTACATTTGA 857568 Query 451516 TGATA-CTTCTGTACTTTCAATTGAAGATGGGGTATTTGAAGTAAAGGCAACCAATGGTG 451574 || || | ||| | |||| || |||| || ||||| || ||||| ||||||| Sbjct 857567 TGTTAGCATCT----TGACAATCGACAATGGAGTTTTTGAGGTCCTCGCAACAAATGGTG 857512 Query 451575 ATACTCATCTAGGAGGT 451591 |||||||| | |||||| Sbjct 857511 ATACTCATTTGGGAGGT 857495 Score = 105 bits (116), Expect = 3e-17 Identities = 93/116 (80%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 451322 GCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCA 451381 |||||||| |||||||| || || ||||||||||||||||| || || || ||||||||| Sbjct 288290 GCAGTAATCACTGTTCCTGCATACTTCAATGATGCACAACGTCAGGCTACGAAAGATGCA 288349 Query 451382 GGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGC 451437 || | |||||||| | |||| | ||||||||||||| || || ||||| || Sbjct 288350 GGCCGGATTGCTGGGCTCGATGTCCAGAGAATTATTAATGAGCCCACGGCAGCAGC 288405 >seq20 Length=10792357 Score = 111 bits (122), Expect = 6e-19 Identities = 136/186 (73%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 451265 GTTCTTACTAAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGATGCA 451324 || || || || ||||| ||||||||||| || | ||| | || | | || Sbjct 10747229 GTCCTCACCAAGATGAAGGAAACAGCAGAGGCCTACTTAGGTAAATCTGTCTCAAAGGCT 10747170 Query 451325 GTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGA 451384 || |||||||| || ||||||||||||||||| || || ||||| ||||| ||||| || Sbjct 10747169 GTTATTACTGTCCCAGCTTATTTCAATGATGCTCAGCGACAAGCTACTAAGGATGCTGGG 10747110 Query 451385 CATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCA 451444 |||||||| ||| | || || | ||||| |||||||| || || ||||| || || Sbjct 10747109 AGAATTGCTGGATTAGAAGTACTAAGGATTATCAATGAACCCACTGCTGCTGCCCTTTCA 10747050 Query 451445 TATGGA 451450 |||||| Sbjct 10747049 TATGGA 10747044 >seq12 Length=12612916 Score = 107 bits (118), Expect = 8e-18 Identities = 248/372 (67%), Gaps = 5/372 (1%) Strand=Plus/Plus Query 451238 TTTGCTCCTGAAGAAATTTCATCTATGGTTCTTACTAAAATGAAAGAAACAGCAGAACAA 451297 ||||| ||||||| || || || ||||| | | |||||| |||| || || | Sbjct 1281343 TTTGCCGCTGAAGAGATCTCCTCCATGGTCTTGATGAAAATGCGTGAAATCGCTGAGGCA 1281402 Query 451298 TATATTGGTTCTCCAGTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCA 451357 || || | || | | | |||| || ||||||| || || |||||||| || | Sbjct 1281403 TACCTTAGCTCCACCATCAAGAATGCTGTTGTTACTGTCCCTGCCTATTTCAACGACTCC 1281462 Query 451358 CAACGGCAAGCAACTAAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATT 451417 || || || || || || ||||| || ||||||||||| |||||| | |||||||| Sbjct 1281463 CAGCGCCAGGCCACCAAGGATGCTGGTGTCATTGCTGGTTTGAATGTTATGAGAATTATT 1281522 Query 451418 AATGAACCTACAGCAGCTGCTCTAGCATATGGAC----TAGGAAAATCAAAAGAAACAGA 451473 ||||| || || || || || | || ||||| | || ||| | |||| | Sbjct 1281523 AATGAGCCCACCGCTGCCGCCATTGCCTATGGCCTCGATAAGAAGGCCGAAAG-CGTTGG 1281581 Query 451474 AGaaaaaaaTATTTTAGTATTTGATTTTGGTGGAGGAACTCATGATACTTCTGTACTTTC 451533 ||||| ||| || | | || ||| ||||||| || || |||| ||| | ||| | Sbjct 1281582 TGAAAAGAATGTTCTCATCTTCGATCTTGGTGGTGGTACATTTGATGTTTCACTTCTTAC 1281641 Query 451534 AATTGAAGATGGGGTATTTGAAGTAAAGGCAACCAATGGTGATACTCATCTAGGAGGTGA 451593 ||||| || || | ||||| || ||||| || ||||| || || || || ||||| Sbjct 1281642 CATTGAGGAGGGAATTTTTGAGGTCAAGGCTACAGCCGGTGACACCCACCTCGGCGGTGA 1281701 Query 451594 AGATATTGATAA 451605 || |||| || Sbjct 1281702 GGACTTTGACAA 1281713 Score = 87.8 bits (96), Expect = 7e-12 Identities = 209/314 (67%), Gaps = 4/314 (1%) Strand=Plus/Plus Query 451967 GGAAAACAACTATGTAAGAGCGTAAATCCTGATGAAGCTGTTGCATATGGTGCTGCAGTT 452026 ||||| | || || || ||| | |||||||||||||||||||| ||||| || ||||| Sbjct 1282075 GGAAAGGAGCTTTGCAAAAGCATCAATCCTGATGAAGCTGTTGCCTATGGGGCGGCAGTC 1282134 Query 452027 CAAGCAGCTATTCTAACAGGTTCAGATGATGAAAAATTAGGAGATATTCTGTTAGTAGAT 452086 || || ||||| || | || || |||||||| | || |||| ||| | ||| Sbjct 1282135 CAGGCCGCTATCTTATCTGGCGAAGGCAATGAAAAAGTGCAGGACCTTCTCTTATTGGAT 1282194 Query 452087 GTAACACCTCTATCTCTTGGAGTTGAAACAGCTGGTGGAATGATGACTAATTTAATTAAA 452146 || || || || || || || | || ||||| ||||| | ||||| | || | Sbjct 1282195 GTTACCCCGCTGTCCCTGGGGCTGGAGACAGCCGGTGGTGTTATGAC--AGTTCTTATCC 1282252 Query 452147 CGAGGA--ACTTCTATTCCTTGTAAAAAGAGTCAAACATTTAGTACAGCAAGTGATAACC 452204 | |||| || |||||||| ||||||| ||| || ||| |||||||| Sbjct 1282253 CAAGGAATACCACTATTCCTACTAAAAAGGAGCAAGTCTTCTCTACTTACTCTGATAACC 1282312 Query 452205 AACCAGGTGTAACTATTCAAGTGTTTGAAGGAGAACGTGCAATGACACGAGATAATAATA 452264 | || ||||| || || || | ||||| || ||| | ||| | ||||| ||| Sbjct 1282313 AGCCTGGTGTGTTGATCCAGGTCTACGAAGGTGAGCGTACCCGGACCAGGGATAACAATT 1282372 Query 452265 AACTAGGAGAATTT 452278 || ||| ||||| Sbjct 1282373 TGCTCGGAAAATTT 1282386 >seq22 Length=10398566 Score = 102 bits (112), Expect = 3e-16 Identities = 184/264 (70%), Gaps = 10/264 (4%) Strand=Plus/Plus Query 451333 TGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGACATATTGC 451392 |||| | || || ||||||||||| || | || || || || ||||| || |||||| Sbjct 9027923 TGTTGCAGCGTACTTCAATGATGCTCAGAGACAGGCGACAAAGGATGCCGGTATTATTGC 9027982 Query 451393 TGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCATATGGACT 451452 |||||| |||||| | |||| || |||||||| || || ||||| | || ||||| || Sbjct 9027983 TGGTTTGAATGTTGCTAGAATAATCAATGAACCGACTGCTGCTGCGATCGCTTATGGTCT 9028042 Query 451453 AGGAAAATCAAAAGAAACAGAAGaaaaaaaTATTTTAGTATTTGATTTTGGTGGAGGAAC 451512 | || | ||| | || || || || | || || || ||||||| || || Sbjct 9028043 GG----ATAAGAAG--GGTGGTGAGAAGAACATCCTTGTTTTCGACCTTGGTGGTGGGAC 9028096 Query 451513 TCATGATACTTCTGTA-CTT-TCAATTGAAGATGGGGTATTTGAAGTAAAGGCAACCAAT 451570 |||| || ||| ||| | || || |||| || ||||| || ||| || ||| Sbjct 9028097 ATTTGAT--GTCAGTATCTTGACTATCGACAATGGCGTCTTTGAGGTTTTGGCGACAAAT 9028154 Query 451571 GGTGATACTCATCTAGGAGGTGAA 451594 |||||||||||||| |||||| || Sbjct 9028155 GGTGATACTCATCTTGGAGGTAAA 9028178 Score = 86.0 bits (94), Expect = 2e-11 Identities = 132/187 (71%), Gaps = 1/187 (1%) Strand=Plus/Plus Query 451265 GTTCTTACTAAA-ATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGATGC 451323 ||| | |||||| ||||| ||||| || ||| || |||| | ||| | | || Sbjct 6896692 GTTTTGACTAAAGATGAAGGAAACTGCTGAATCTTACCTTGGAAAGTCTGTTTCGAAAGC 6896751 Query 451324 AGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGG 451383 || | |||||||| ||| || |||||||| | | |||| || || ||||||||||| Sbjct 6896752 AGCTACAACTGTTCCTGCTGATCTCAATGATACTCGGAGGCAGGCTACAAAAGATGCAGG 6896811 Query 451384 ACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGC 451443 |||||||| || |||| | |||||||||||| | | || || |||||||| | Sbjct 6896812 GAGAATTGCTGGACTAGATGTGCAGAGAATTATTAATGGAGCAACTGCTGCTGCTCTTTC 6896871 Query 451444 ATATGGA 451450 |||||| Sbjct 6896872 TTATGGA 6896878 Score = 86.0 bits (94), Expect = 2e-11 Identities = 91/120 (76%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 450917 ATTGGAATTGATCTTGGAACCACCTTTTCATGTGTAGGTGTTTACCAAAATGGAAATGTA 450976 ||||| || ||||| || ||||||| |||||| || ||||| ||| | ||||| |||| Sbjct 9027292 ATTGGTATAGATCTCGGCACCACCTATTCATGCGTTGGTGTCTACAAGAATGGTCATGTG 9027351 Query 450977 GAAATTATAGCAAATGACCAAGGATCACGAACTACTCCTTCATGGGTAAGTTTTACGGAT 451036 || |||||||| |||||||||||| || | || || || ||||| || |||||| Sbjct 9027352 GAGATTATAGCTAATGACCAAGGAAACCGCATCACCCCATCGTGGGTGGCGTTCACGGAT 9027411 >seq2035 Length=3869 Score = 95.1 bits (104), Expect = 5e-14 Identities = 132/185 (71%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 451265 GTTCTTACTAAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGATGCA 451324 ||||| || || ||||||||||| || || ||| | || | ||| | | ||| Sbjct 516 GTTCTGACGAAGATGAAAGAAACTGCGGACTCCTATCTCGGAAAATCTGTTTCGAAAGCA 575 Query 451325 GTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGA 451384 || ||||| ||||| |||||||| || ||||| ||| |||| || || |||||||| || Sbjct 576 GTGATTACCGTTCCGGCTTATTTTAACGATGCGCAAAGGCAGGCTACAAAAGATGCGGGC 635 Query 451385 CATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCA 451444 | ||||| || | |||||| | ||||| || ||||| || ||||| ||| | | Sbjct 636 CGGATTGCCGGGCTTGATGTTCAGAGGATTATAAACGAACCCACTGCAGCGGCTTTGTCT 695 Query 451445 TATGG 451449 ||||| Sbjct 696 TATGG 700 >seq18 Length=10911977 Score = 95.1 bits (104), Expect = 5e-14 Identities = 241/365 (66%), Gaps = 5/365 (1%) Strand=Plus/Minus Query 451245 CTGAAGAAATTTCATCTATGGTTCTTACTAAAATGAAAGAAACAGCAGAACAATATATTG 451304 |||| || || || || |||||||| | || ||| || | || || ||| ||| Sbjct 10391614 CTGAGGAGATCTCCTCAATGGTTCTGATGAAGATGCGCGAGATTGCTGAGGCCTATCTTG 10391555 Query 451305 GTTCTCCAGTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGC 451364 |||| | | | | || || | || || || || || ||||| || | || |||| Sbjct 10391554 GTTCCACCATCAAGAACGCCGTTGTCACCGTCCCTGCCTACTTCAACGACTCTCAGCGGC 10391495 Query 451365 AAGCAACTAAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAAC 451424 | || |||||||||||||| ||||| || | ||||| | || ||||||||||||| Sbjct 10391494 AGGCCACTAAAGATGCAGGTGTCATTGCCGGCCTCAATGTCATGCGTATTATTAATGAAC 10391435 Query 451425 CTACAGCAGCTGCTCTAGCATATGGACT----AGGAAAATCAAAAGAAACAGAAGaaaaa 451480 | ||||| |||||| | || ||||| || | ||| || || | ||| || Sbjct 10391434 CCACAGCGGCTGCTATTGCCTATGGGCTTGACAAGAAGGCCACCAG-TGTTGGAGAGAAG 10391376 Query 451481 aaTATTTTAGTATTTGATTTTGGTGGAGGAACTCATGATACTTCTGTACTTTCAATTGAA 451540 || || | | || || || || || || || |||| || | ||| | |||||| Sbjct 10391375 AACGTTCTCATCTTCGACTTAGGAGGCGGCACCTTTGATGTCTCCCTCCTTACCATTGAA 10391316 Query 451541 GATGGGGTATTTGAAGTAAAGGCAACCAATGGTGATACTCATCTAGGAGGTGAAGATATT 451600 || ||| | || || || ||||| || |||||| || ||||| || || || || || Sbjct 10391315 GAGGGGATCTTCGAGGTGAAGGCCACAGCTGGTGACACGCATCTCGGTGGCGAGGACTTT 10391256 Query 451601 GATAA 451605 || || Sbjct 10391255 GACAA 10391251 >seq3 Length=16781886 Score = 95.1 bits (104), Expect = 5e-14 Identities = 132/185 (71%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 451265 GTTCTTACTAAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGATGCA 451324 ||||| || || ||||||||||| || || ||| | || | ||| | | ||| Sbjct 11716131 GTTCTGACGAAGATGAAAGAAACTGCGGACTCCTATCTCGGAAAATCTGTTTCGAAAGCA 11716072 Query 451325 GTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGA 451384 || ||||| ||||| |||||||| || ||||| ||| |||| || || |||||||| || Sbjct 11716071 GTGATTACCGTTCCGGCTTATTTTAACGATGCGCAAAGGCAGGCTACAAAAGATGCGGGC 11716012 Query 451385 CATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCA 451444 | ||||| || | |||||| | ||||| || ||||| || ||||| ||| | | Sbjct 11716011 CGGATTGCCGGGCTTGATGTTCAGAGGATTATAAACGAACCCACTGCAGCGGCTTTGTCT 11715952 Query 451445 TATGG 451449 ||||| Sbjct 11715951 TATGG 11715947 >seq17 Length=11156084 Score = 89.7 bits (98), Expect = 2e-12 Identities = 141/201 (70%), Gaps = 11/201 (5%) Strand=Plus/Plus Query 451313 GTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACT 451372 ||||| | |||||| | || ||||| || ||||||||||| | || || ||||| Sbjct 3413467 GTTACCAAAGCAGTAGTCACAGTTCCTGCCTATTTCAATGACTCTCAGAGGACCGCAACA 3413526 Query 451373 AAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCA 451432 |||||||| || | ||||||||| || | |||||||| || || || || || || ||| Sbjct 3413527 AAAGATGCTGGTCGTATTGCTGGATTGGAAGTTCTTCGTATCATAAACGAGCCAACTGCA 3413586 Query 451433 GCTGCTCTAGCATATGGACTAGGAAAATCAAAAGAAACAGAAGaa-aaaaaTATTTTAGT 451491 || | | || |||||| | | |||||| |||| || ||| |||||||| Sbjct 3413587 GCATCATTGGCTTATGGATT-------TGAAAAGA---AGAACAATGAAACGATTTTAGT 3413636 Query 451492 ATTTGATTTTGGTGGAGGAAC 451512 ||||| || || || || || Sbjct 3413637 GTTTGACTTGGGAGGTGGCAC 3413657 >seq23 Length=7979763 Score = 84.2 bits (92), Expect = 9e-11 Identities = 112/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 451979 TGTAAGAGCGTAAATCCTGATGAAGCTGTTGCATATGGTGCTGCAGTTCAAGCAGCTATT 452038 || |||||| | || || || ||||||||||| ||||| ||||| || || || || ||| Sbjct 731640 TGCAAGAGCATCAACCCCGACGAAGCTGTTGCTTATGGGGCTGCGGTCCAGGCCGCAATT 731581 Query 452039 CTAACAGGTTCAGATGATGAAAAATTAGGAGATATTCTGTTAGTAGATGTAACACCTCTA 452098 | | ||| || |||||||| || ||| |||| | | ||||| || ||||| Sbjct 731580 TTGAGCGGTGAAGGCAATGAAAAAGTACAAGACCTTCTCCTCTTGGATGTTACTCCTCTT 731521 Query 452099 TCTCTTGGAGTTGAAACAGCTGGTGGAATGATGACT 452134 || || || | ||||| ||||| ||| | |||||| Sbjct 731520 TCACTCGGTCTGGAAACTGCTGGAGGAGTCATGACT 731485 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1975639192831932