Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ananas_20comosus_20[refseq_20GCF_5F001540865.1_202016-03-14] 3,129 sequences; 382,055,938 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq22 122 1e-22 seq433 93.3 5e-14 seq21 93.3 5e-14 seq5 84.2 3e-11 >seq22 Length=10398566 Score = 122 bits (134), Expect = 1e-22 Identities = 258/380 (68%), Gaps = 4/380 (1%) Strand=Plus/Plus Query 11592 GAAACCGTCCATTTCTGTGAGAAGCTGGTTGATCGTCTGTTCACGCTCATCGTTGGAGG- 11650 ||| || ||||| || ||||| ||||||||||| ||||| || ||||| |||||| | Sbjct 8185039 GAAGCCATCCATCTCAGTGAGGAGCTGGTTGATGGTCTGCTCGCGCTCGTCGTTGCCGCC 8185098 Query 11651 GCATACCACCTGCCGAACGCTTCTTACCGACAGCGTCAATCTCATCGATGAATACGATAC 11710 || | | || ||| |||| ||||| ||||| ||||| |||||||| ||||| | Sbjct 8185099 GCCGAGCCCC-GCCCCGCGCTGGCGGCCGACGGCGTCGATCTCGTCGATGAAGACGATGC 8185157 Query 11711 ACGGTTGGTTGGCACGTG-CCTGTTCGAAAAGTTCACGTACACGCTTCGCTCCAACACCT 11769 | || |||| || || ||| ||||| || || || || || || || || || Sbjct 8185158 AGGGGGCCTTGG-ACTTGGCCTTCTCGAAGAGGTCCCGGACGCGGGAGGCGCCGACGCCG 8185216 Query 11770 ACGAACATCTCAACGAAGTTTGCGGCAGAACACTGAATGAAGGGAACATTAGACTCACCA 11829 ||||| | ||| ||||| | | ||| | || | |||||| || | ||| || Sbjct 8185217 ACGAAGAGCTCGACGAATTCGGAGGCGGCGCAGGAGAAGAAGGGGACGCCGGCCTCGCCG 8185276 Query 11830 GCGATGGCTCGAGCGAGGAGAGTCTTACCCGTACCAGGTGCACCAGCGAGAAGGGCGCCA 11889 |||| ||| || ||||| || ||||| || || || || | || |||| ||| ||| Sbjct 8185277 GCGACGGCGCGGGCGAGCAGGGTCTTGCCGGTGCCGGGGGGGCCGACGAGGAGGCAGCCC 8185336 Query 11890 CGGGGGATCTTGGCACCACTTCCAAAGTAGCGCTCAGGCTTCTTGAGGAAGTCCACAATC 11949 |||||||||||| || | ||| || || ||||| |||||||| || | | Sbjct 8185337 TTGGGGATCTTGGCGCCGAGGGCGGTGTACTTGTCGGGGTTCTTCAGGAAGTCGACGACC 8185396 Query 11950 TCCTCAAGTTCCTCCTTGGC 11969 |||| || || |||||| Sbjct 8185397 TCCTGGAGCTCGAGCTTGGC 8185416 >seq433 Length=30188 Score = 93.3 bits (102), Expect = 5e-14 Identities = 108/146 (74%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 119508 TGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGTCCT 119567 || || || || || || ||||||||||| || |||| || || |||||||| || Sbjct 24230 TGGAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCGGGCATGAGGCCG 24171 Query 119568 CTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACACAG 119627 | ||||| ||||| |||||||| || || || || ||||||| |||||| || ||| Sbjct 24170 CGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCGGAGAAGAAGACGCCCTCGACGCAG 24111 Query 119628 GCGAAAGCGAATAGACGCTCAGCAAA 119653 ||||| |||| || ||||| || || Sbjct 24110 GCGAAGGCGACGAGGCGCTCGGCGAA 24085 >seq21 Length=10645290 Score = 93.3 bits (102), Expect = 5e-14 Identities = 108/146 (74%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 119508 TGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGTCCT 119567 || || || || || || ||||||||||| || |||| || || |||||||| || Sbjct 999451 TGGAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCGGGCATGAGGCCG 999392 Query 119568 CTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACACAG 119627 | ||||| ||||| |||||||| || || || || ||||||| |||||| || ||| Sbjct 999391 CGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCGGAGAAGAAGACGCCCTCGACGCAG 999332 Query 119628 GCGAAAGCGAATAGACGCTCAGCAAA 119653 ||||| |||| || ||||| || || Sbjct 999331 GCGAAGGCGACGAGGCGCTCGGCGAA 999306 >seq5 Length=15024279 Score = 84.2 bits (92), Expect = 3e-11 Identities = 52/56 (93%), Gaps = 0/56 (0%) Strand=Plus/Minus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCC 136772 ||||||||||||||||||||||||||| |||||||||||||| | |||||||| || Sbjct 4023397 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCAGGTTCGAGACC 4023342 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588952963676200