Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ananas_20comosus_20[refseq_20GCF_5F001540865.1_202016-03-14] 3,129 sequences; 382,055,938 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq433 129 7e-25 seq21 129 7e-25 seq22 116 4e-21 seq13 114 2e-20 seq3 111 2e-19 seq300 105 8e-18 seq2 105 8e-18 seq336 96.9 4e-15 seq647 93.3 5e-14 >seq433 Length=30188 Score = 129 bits (142), Expect = 7e-25 Identities = 119/151 (79%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 117285 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACC 117344 |||||| ||||| || ||||| || || || || |||||| ||||| |||||||| || Sbjct 24231 GTGGAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCGGGCATGAGGCC 24172 Query 117345 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 117404 |||||||| | ||| | || |||||||| || ||||||||||||| ||||| || || Sbjct 24171 GCGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCGGAGAAGAAGACGCCCTCGACGCA 24112 Query 117405 CGCAAACGCAAAAAGGCGCTCGGCGAAGGAG 117435 || || || | |||||||||||||||||| Sbjct 24111 GGCGAAGGCGACGAGGCGCTCGGCGAAGGAG 24081 >seq21 Length=10645290 Score = 129 bits (142), Expect = 7e-25 Identities = 119/151 (79%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 117285 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACC 117344 |||||| ||||| || ||||| || || || || |||||| ||||| |||||||| || Sbjct 999452 GTGGAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCGGGCATGAGGCC 999393 Query 117345 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 117404 |||||||| | ||| | || |||||||| || ||||||||||||| ||||| || || Sbjct 999392 GCGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCGGAGAAGAAGACGCCCTCGACGCA 999333 Query 117405 CGCAAACGCAAAAAGGCGCTCGGCGAAGGAG 117435 || || || | |||||||||||||||||| Sbjct 999332 GGCGAAGGCGACGAGGCGCTCGGCGAAGGAG 999302 >seq22 Length=10398566 Score = 116 bits (128), Expect = 4e-21 Identities = 228/330 (69%), Gaps = 8/330 (2%) Strand=Plus/Minus Query 9231 ATATCAACGCGATTCGTCGCGGCGATGACAACAATACC--TGTTTCATTATCAAAACCAT 9288 || ||| ||||||| || || || || |||| |||||| |||||| || | || |||| Sbjct 1625220 ATGTCAGCGCGATTAGTGGCAGCAATCACAATAATACCGGTGTTTCCTT--CGAACCCAT 1625163 Query 9289 CCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCT-GGCATACCA 9347 ||||||| |||||||| || || | || ||||| | ||||||||| || | | | Sbjct 1625162 CCATCTCAGTCAAAAGCTGATTTAGTGTCTGTTCTCTCTCATCATTCCCTCCACCGATC- 1625104 Query 9348 CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATACATGGTTGA 9407 || | || | |||| | || || ||||| |||||||||| || || || || || | Sbjct 1625103 CCTGTACCTCTTTGCCTCCCGACTGCATCGATCTCATCAACAAACACTATGCAAGGGGCA 1625044 Query 9408 TTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACCAACAAACATC 9467 || || || | | || || ||||| || | | ||| || ||||| ||||||||| Sbjct 1625043 TTCTCTTTTGCCTTCTTGAAAAGGTCGCGGACACGTGAGGCACCGACACCCACAAACATC 1624984 Query 9468 TCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGC 9526 || ||||| | | | ||| || | | ||| ||||| | |||||| ||||| || Sbjct 1624983 TCTACAAATTCAGATCCCGAA-ATAGAAAAGAATGGGACCCCTGCTTCACCTGCAATTGC 1624925 Query 9527 TCGGGCGAGAAGAGTCTTACCCGTACCTGG 9556 ||| || | |||||| || || ||||| Sbjct 1624924 CTTGGCTAGCAAAGTCTTCCCAGTTCCTGG 1624895 >seq13 Length=11759267 Score = 114 bits (126), Expect = 2e-20 Identities = 117/152 (77%), Gaps = 3/152 (2%) Strand=Plus/Minus Query 117285 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACC 117344 |||||| ||||| || ||||| ||||| | || |||||| || || |||||||| || Sbjct 1165048 GTGGAGGCCCTCGTCGCGGGAGATAAGCTTGTTGGAGAAGGTGAGCCCGGGCATGAGGCC 1164989 Query 117345 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 117404 |||||||| | ||| | || || ||| | || |||||||||||| ||||| ||||| Sbjct 1164988 ACGCTTCTTGAGCCAGAAGATGGCTCAGCAGGAGCCGGAGAAGAAG---CCCTCGACACA 1164932 Query 117405 CGCAAACGCAAAAAGGCGCTCGGCGAAGGAGC 117436 || || || | ||||||||||||||||||| Sbjct 1164931 GGCGAAGGCGACGAGGCGCTCGGCGAAGGAGC 1164900 Score = 93.3 bits (102), Expect = 5e-14 Identities = 112/152 (74%), Gaps = 3/152 (2%) Strand=Plus/Plus Query 117285 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACC 117344 |||||| |||| || |||| | || || || |||||| || || |||||||| || Sbjct 9967758 GTGGAGGCCCTTGTCGTGGGAGACGAGCTCGTTGGAGAAGGTGAGCCCGGGCATGAGGCC 9967817 Query 117345 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 117404 |||||||| | ||| | || || ||| | || |||||||||||| ||||| || || Sbjct 9967818 ACGCTTCTTGAGCCAGAAGATGGCTCAGCAGGAGCCGGAGAAGAAG---CCCTCGACGCA 9967874 Query 117405 CGCAAACGCAAAAAGGCGCTCGGCGAAGGAGC 117436 || || || | |||||||||||||| |||| Sbjct 9967875 GGCGAAGGCGACGAGGCGCTCGGCGAAAGAGC 9967906 >seq3 Length=16781886 Score = 111 bits (122), Expect = 2e-19 Identities = 116/152 (76%), Gaps = 3/152 (2%) Strand=Plus/Plus Query 117285 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACC 117344 |||||| ||||| || ||||| ||||| | || |||||| || || |||||||| || Sbjct 8692730 GTGGAGGCCCTCGTCGCGGGAGATAAGCTTGTTGGAGAAGGTGAGCCCGGGCATGAGGCC 8692789 Query 117345 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 117404 |||||||| | ||| | || || ||| | || |||||||||||| || || ||||| Sbjct 8692790 ACGCTTCTTGAGCCAGAAGATGGCTCAGCAGGAGCCGGAGAAGAAG---CCGTCGACACA 8692846 Query 117405 CGCAAACGCAAAAAGGCGCTCGGCGAAGGAGC 117436 || || || | ||||||||||||||||||| Sbjct 8692847 GGCGAAGGCGACGAGGCGCTCGGCGAAGGAGC 8692878 >seq300 Length=35074 Score = 105 bits (116), Expect = 8e-18 Identities = 115/152 (76%), Gaps = 3/152 (2%) Strand=Plus/Plus Query 117285 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACC 117344 |||||| |||||||| ||||| || || | || |||||| || || |||||||| || Sbjct 28737 GTGGAGGCCCTCATCGCGGGAGATGAGCTTGTTGGAGAAGGTGAGCCCGGGCATGAGGCC 28796 Query 117345 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 117404 |||||||| | ||| | || || ||| | || |||||||||||| ||||| || | Sbjct 28797 ACGCTTCTTGAGCCAGAAGATGGCTCAGCAGGAGCCGGAGAAGAAG---CCCTCGACGTA 28853 Query 117405 CGCAAACGCAAAAAGGCGCTCGGCGAAGGAGC 117436 || || || | ||||||||||||||||||| Sbjct 28854 GGCGAAGGCGACGAGGCGCTCGGCGAAGGAGC 28885 >seq2 Length=17334668 Score = 105 bits (116), Expect = 8e-18 Identities = 115/152 (76%), Gaps = 3/152 (2%) Strand=Plus/Minus Query 117285 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACC 117344 |||||| ||||| || ||||| || || || || |||||| || || |||||||| || Sbjct 14397001 GTGGAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGCCCGGGCATGAGGCC 14396942 Query 117345 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 117404 |||||||| | ||| | || || ||| | || |||||||||||| ||||| || || Sbjct 14396941 ACGCTTCTTGAGCCAGAAGATGGCTCAGCAGGAGCCGGAGAAGAAG---CCCTCGACGCA 14396885 Query 117405 CGCAAACGCAAAAAGGCGCTCGGCGAAGGAGC 117436 || || || | |||||||||||||| |||| Sbjct 14396884 GGCGAAGGCGACGAGGCGCTCGGCGAAAGAGC 14396853 >seq336 Length=33712 Score = 96.9 bits (106), Expect = 4e-15 Identities = 113/152 (74%), Gaps = 3/152 (2%) Strand=Plus/Minus Query 117285 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACC 117344 |||||| ||||| || ||||| || || | || |||||| || || |||||||| || Sbjct 19094 GTGGAGGCCCTCGTCGCGGGAGATGAGCTTGTTGGAGAAGGTGAGCCCGGGCATGAGGCC 19035 Query 117345 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 117404 |||||||| | ||| | || || ||| | || |||||||||||| ||||| || || Sbjct 19034 ACGCTTCTTGAGCCAGAAGATGGCTCAGCAGGAGCCGGAGAAGAAG---CCCTCGACGCA 18978 Query 117405 CGCAAACGCAAAAAGGCGCTCGGCGAAGGAGC 117436 || || || | | ||||||||||||| ||| Sbjct 18977 GGCGAAGGCGACGAAGCGCTCGGCGAAGAAGC 18946 >seq647 Length=24519 Score = 93.3 bits (102), Expect = 5e-14 Identities = 112/152 (74%), Gaps = 3/152 (2%) Strand=Plus/Plus Query 117285 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACC 117344 |||||| ||||| || ||||| || || | || |||||| || || ||||||| || Sbjct 9977 GTGGAGGCCCTCGTCGCGGGAGATGAGCTTGTTGGAGAAGGTGAGCCCGAGCATGAGGCC 10036 Query 117345 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 117404 |||||| | ||| | || || ||| | || |||||||||||| ||||| || || Sbjct 10037 ATTCTTCTTGAGCCAGAAGATGGCTCAGCAGGAGCCGGAGAAGAAG---CCCTCGACGCA 10093 Query 117405 CGCAAACGCAAAAAGGCGCTCGGCGAAGGAGC 117436 ||||| || | |||||||||||||| |||| Sbjct 10094 GGCAAAGGCGACGAGGCGCTCGGCGAAAGAGC 10125 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589957724375960