Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ananas_20comosus_20[refseq_20GCF_5F001540865.1_202016-03-14] 3,129 sequences; 382,055,938 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq5 107 2e-18 seq23 86.0 7e-12 >seq5 Length=15024279 Score = 107 bits (118), Expect = 2e-18 Identities = 157/222 (71%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 48359 ACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACC 48418 ||| |||||||| | ||| | ||||||| ||| | |||| | ||| || ||||| || Sbjct 11649875 ACCCCCTTGATCAACATAACGAGCAGTATCATTAAACACTCGCAGCATAGGAACAATCCC 11649816 Query 48419 ATTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGA 48478 ||| || | ||||| || || ||| ||||| ||| | || | || || ||| || Sbjct 11649815 ATTAGAAGTCCCATTTGTCCCACGAATGTAACTCCCAGTTGCACGAATGTTGTGAATAGA 11649756 Query 48479 AATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAAT 48538 || ||| || || ||||| ||| ||| | ||||||| || || ||||||||||| Sbjct 11649755 AACACCAATTCCTCCTGCGGATTTGCTTATGACAGCACACTCCTTCAGAGTATCATAAAT 11649696 Query 48539 TCCTTCTATACTATCATCTATCATATTTAATAGAAAACAACT 48580 ||| || |||||||| ||| |||| | |||||||| || Sbjct 11649695 TCCCTCAATACTATCCTCTTTCATGCAGACAAGAAAACAGCT 11649654 >seq23 Length=7979763 Score = 86.0 bits (94), Expect = 7e-12 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 18961 CATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAA 19020 ||||||||||||||||| || ||||| ||||| ||| | |||||| || ||||| || Sbjct 3465929 CATGCAAAATCACAATGGAGGCCCTCATCTCTTGATATAAGTTCATTTGAGAATGTCAAT 3465988 Query 19021 CCAGGCATCAGTCCTCttttttttAACCAGAATAT 19055 |||||||||| ||||| || |||| ||| || || Sbjct 3465989 CCAGGCATCAAACCTCTCTTCTTTAGCCAAAAAAT 3466023 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562086814519560