Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ananas_20comosus_20[refseq_20GCF_5F001540865.1_202016-03-14] 3,129 sequences; 382,055,938 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq23 167 2e-35 seq12 125 6e-23 seq20 116 3e-20 seq21 113 4e-19 seq3 105 5e-17 seq17 96.9 3e-14 seq7 91.5 1e-12 seq22 87.8 1e-11 seq18 87.8 1e-11 >seq23 Length=7979763 Score = 167 bits (184), Expect = 2e-35 Identities = 466/708 (66%), Gaps = 8/708 (1%) Strand=Plus/Minus Query 551895 GCTCTTCGTCGTCTAAGAACTGCTTGCGAAAGAGCCAAACGAGCTCTTTCATCTGGTACT 551954 |||||||| | || | ||||| ||||| || || || | | || || || | Sbjct 731943 GCTCTTCGCAGGCTTCGGACTGCATGCGAGAGGGCAAAGAGGACCCTCTCTTCCACCGCC 731884 Query 551955 CAAACCACTATTGAAGTAGATTCATTATTTGAGGGAATTGATTATAATACGCCTATTTCG 552014 ||||| || || ||| | || || | | |||||| | |||| | || ||||| | Sbjct 731883 CAAACAACAATCGAAATTGACTCCCTTTATGAGGGCGTCGATTTCTACTCGACTATTACA 731824 Query 552015 AGGGCCAAATTTGAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCAGTAGAA 552074 || |||| |||||| || | || || || ||||| || || || || || Sbjct 731823 AGAGCCAGATTTGAGGAGCTCAACATGGACCTGTTCAGAAAGTGCATGGAGCCTGTTGAG 731764 Query 552075 CAAGTT-TTAAGAGATTCAAAGATTGATAAATCCAAAGTACATGAAATTGTGCTTGTTGG 552133 |||| ||||||||| | ||||| || || || |||||||| |||| || || || Sbjct 731763 -AAGTGCTTAAGAGATGCCAAGATGGACAAGAGCAGCGTACATGATGTTGTCCTGGTCGG 731705 Query 552134 TGGATCTACAAGAATTCCTAAAATTCGCGAAATGTTA-AGTTCTTATTTCAATGGTAAAA 552192 ||| || || ||||||| | ||| | || | || ||| ||| ||||| || Sbjct 731704 TGGGTCGACCCGAATTCCCAGGGTTCAGCAGCTGCTGCAGGACTTCTTT-AATGGAAAGG 731646 Query 552193 AATTAAATGAAAGTG--TTAATCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAGC 552250 | || || ||| | | || || || || |||||||| ||||| || || | || || Sbjct 731645 AGTTG--TGCAAGAGCATCAACCCCGACGAAGCTGTTGCTTATGGGGCTGCGGTCCAGGC 731588 Query 552251 AGCTATTCTTTCTGGACAAACTGATGAAAAACTACAAAATATTGTACTTGTAGATGTTAC 552310 || ||| | || || |||||||| ||||| | || | || | |||||||| Sbjct 731587 CGCAATTTTGAGCGGTGAAGGCAATGAAAAAGTACAAGACCTTCTCCTCTTGGATGTTAC 731528 Query 552311 TCCTCTATCTCTTGGTTTAGAAACAGTTGGAGGTATTATGACTAATCTTATCGATAGAAA 552370 |||||| || || ||| | ||||| | |||||| | |||||| ||||||| || || Sbjct 731527 TCCTCTTTCACTCGGTCTGGAAACTGCTGGAGGAGTCATGACTGTTCTTATCCCGAGGAA 731468 Query 552371 TACTACTATTCCTTGTAAAAAATCTCGTGTATTTTCTACGTATTCAGATAATCAAACTGC 552430 || ||||| || || ||| | || || || || ||||| ||||| || | | Sbjct 731467 CACCACTATCCCGACCAAGAAAGAGCAGGTGTTCTCGACCTATTCTGATAACCAGCCCGG 731408 Query 552431 TGTTACAATTCAAATTTTTGAAGGAGAAAGAAAATTCACTAAAGATAATAATCAACTTGG 552490 |||| ||||| ||| ||| || || || | || || || || |||| ||||| Sbjct 731407 TGTTTTGATTCAGGTTTATGAGGGTGAGAGGACGAGGACAAAGGACAACAATCTCCTTGG 731348 Query 552491 TACTTTTAATTTAGAAGGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTAC 552550 || || | | |||||||||||||||||| | || || || || || || Sbjct 731347 TAAATTCGAGCTCTCTGGTATTCCTCCTGCTCCTAGGGGTGTGCCTCAGATCACCGTCTG 731288 Query 552551 TTTCGATATCGATGCCAATGGAATTTTGAATGTGACTGCTTGTGATAA 552598 ||||||||| |||||||| || || |||||||| ||||| ||||| Sbjct 731287 TTTCGATATTGATGCCAACGGTATCTTGAATGTCTCTGCTGAGGATAA 731240 >seq12 Length=12612916 Score = 125 bits (138), Expect = 6e-23 Identities = 359/543 (66%), Gaps = 8/543 (1%) Strand=Plus/Plus Query 551895 GCTCTTCGTCGTCTAAGAACTGCTTGCGAAAGAGCCAAACGAGCTCTTTCATCTGGTACT 551954 ||||| ||| | | ||||| | || || || || || | |||| || || | || Sbjct 1281784 GCTCTCCGTAGGTTGAGAACCTCATGTGAGAGGGCTAAGAGGACTCTCTCCTCCACTGCT 1281843 Query 551955 CAAACCACTATTGAAGTAGATTCATTATTTGAGGGAATTGA-TTATAATACGCCTATTTC 552013 |||||||| ||||| | ||||| || | ||| || |||| || || | | | ||| | Sbjct 1281844 CAAACCACGATTGAGATTGATTCTTTGTATGAAGGCGTTGACTTCTACT-CTACGATTAC 1281902 Query 552014 GAGGGCCAAATTTGAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCAGTAGA 552073 |||| |||||||| | || || || | ||| || || || || || Sbjct 1281903 ACGGGCTCGGTTTGAAGAGCTCAACATGGACCTGTTCCGCAAATGCATGGAGCCGGTCGA 1281962 Query 552074 ACAAGTT-TTAAGAGATTCAAAGATTGATAAATCCAAAGTACATGAAATTGTGCTTGTTG 552132 |||| ||||||||| | ||||| |||||| || || || || |||| ||||||| Sbjct 1281963 G-AAGTGCTTAAGAGATGCCAAGATGGATAAAAGCACCGTTCACGACGTTGTCCTTGTTG 1282021 Query 552133 GTGGATCTACAAGAATTCCTAAAATTCGCGAAATGTT--AAGTTCTTATTTCAATGGTAA 552190 |||| || || || ||||||| | | | | | ||| ||| || |||||| || Sbjct 1282022 GTGGCTCCACCAGGATTCCTAGGGTCCAACAGCTTCTCCAAGA-CTTCTT-CAATGGAAA 1282079 Query 552191 AAAATTAAATGAAAGTGTTAATCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAGC 552250 | | |||| | ||||| ||||| |||||||||||||| || ||| | || || Sbjct 1282080 GGAGCTTTGCAAAAGCATCAATCCTGATGAAGCTGTTGCCTATGGGGCGGCAGTCCAGGC 1282139 Query 552251 AGCTATTCTTTCTGGACAAACTGATGAAAAACTACAAAATATTGTACTTGTAGATGTTAC 552310 ||||| | ||||| || |||||||| | || | || | | | |||||||| Sbjct 1282140 CGCTATCTTATCTGGCGAAGGCAATGAAAAAGTGCAGGACCTTCTCTTATTGGATGTTAC 1282199 Query 552311 TCCTCTATCTCTTGGTTTAGAAACAGTTGGAGGTATTATGACTAATCTTATCGATAGAAA 552370 || || || || || | || |||| || ||| ||||||| ||||||| || || Sbjct 1282200 CCCGCTGTCCCTGGGGCTGGAGACAGCCGGTGGTGTTATGACAGTTCTTATCCCAAGGAA 1282259 Query 552371 TACTACTATTCCTTGTAAAAAATCTCGTGTATTTTCTACGTATTCAGATAATCAAACTGC 552430 ||| ||||||||| |||||| | || || ||||| || || ||||| || ||| Sbjct 1282260 TACCACTATTCCTACTAAAAAGGAGCAAGTCTTCTCTACTTACTCTGATAACCAGCCTGG 1282319 Query 552431 TGT 552433 ||| Sbjct 1282320 TGT 1282322 >seq20 Length=10792357 Score = 116 bits (128), Expect = 3e-20 Identities = 103/129 (80%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 550400 GCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCT 550459 || || || ||||| ||||| ||||| ||||| | || || ||||||||||| |||||| Sbjct 10747172 GCTGTTATTACTGTCCCAGCTTATTTCAATGATGCTCAGCGACAAGCTACTAAGGATGCT 10747113 Query 550460 GGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTT 550519 || | ||||||||| | | || || | |||||||||||||| ||||||||||| ||| Sbjct 10747112 GGGAGAATTGCTGGATTAGAAGTACTAAGGATTATCAATGAACCCACTGCTGCTGCCCTT 10747053 Query 550520 GCATATGGA 550528 |||||||| Sbjct 10747052 TCATATGGA 10747044 >seq21 Length=10645290 Score = 113 bits (124), Expect = 4e-19 Identities = 107/137 (78%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 550400 GCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCT 550459 ||||| |||| || || || || ||||||||||||||| | ||| || ||||||||| Sbjct 7727811 GCAGTGGTAACGGTTCCTGCGTACTTTAATGACTCACAAAGGACAGCAACAAAAGATGCT 7727752 Query 550460 GGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTT 550519 || || |||||||| | | ||||||||||||||||||||||| ||||| || | | Sbjct 7727751 GGTCGCATTGCTGGGTTGGAAGTTCTTCGTATTATCAATGAACCGACTGCAGCATCTTTG 7727692 Query 550520 GCATATGGACTTGATAA 550536 || |||||| |||| || Sbjct 7727691 GCGTATGGATTTGAAAA 7727675 >seq3 Length=16781886 Score = 105 bits (116), Expect = 5e-17 Identities = 153/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 563259 ACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTTGA 563318 |||||| |||||||| || || |||||| || ||||||||| | |||||||| Sbjct 16131699 ACGGAGAACAAGATGGAGAGTTGATTCTTTCTGAACATTGTAATCGGACAGAGTTCTCCC 16131640 Query 563319 ATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTT 563378 || || ||||| || || ||||| || || || ||||| || | || || ||||| || Sbjct 16131639 GTCCTCGAGTTGCTTGCCAGCAAAGATGAGCCTCTGCTGGTCTGAGGGGATGCCTTCCTT 16131580 Query 563379 ATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACATTCGAGAGTAAC 563438 || ||||||||| || || |||||||||||||| | | || ||||| | Sbjct 16131579 GTCCTGAATTTTTGCCTTGACGTTCTCAATTGTATCAGAGGTCTCAACCTCCAGAGTTAT 16131520 Query 563439 AGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 || || || ||||| || || || ||||| ||||| Sbjct 16131519 GGTCTTTCCGGTAAGGGTCTTGACAAAAATCTGCAT 16131484 Score = 105 bits (116), Expect = 5e-17 Identities = 153/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 563259 ACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTTGA 563318 |||||| |||||||| || || |||||| || ||||||||| | |||||||| Sbjct 16199503 ACGGAGAACAAGATGGAGAGTTGATTCTTTCTGAACATTGTAATCGGACAGAGTTCTCCC 16199444 Query 563319 ATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTT 563378 || || ||||| || || ||||| || || || ||||| || | || || ||||| || Sbjct 16199443 GTCCTCGAGTTGCTTGCCAGCAAAGATGAGCCTCTGCTGGTCTGAGGGGATGCCTTCCTT 16199384 Query 563379 ATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACATTCGAGAGTAAC 563438 || ||||||||| || || |||||||||||||| | | || ||||| | Sbjct 16199383 GTCCTGAATTTTTGCCTTGACGTTCTCAATTGTATCAGAGGTCTCAACCTCCAGAGTTAT 16199324 Query 563439 AGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 || || || ||||| || || || ||||| ||||| Sbjct 16199323 GGTCTTTCCGGTAAGGGTCTTGACAAAAATCTGCAT 16199288 >seq17 Length=11156084 Score = 96.9 bits (106), Expect = 3e-14 Identities = 109/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 550391 GTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACT 550450 ||||| | |||||| | || || || || ||||| |||||||| || | || || Sbjct 3413467 GTTACCAAAGCAGTAGTCACAGTTCCTGCCTATTTCAATGACTCTCAGAGGACCGCAACA 3413526 Query 550451 AAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCT 550510 ||||||||||| |||||||||||| | | ||||||||||| || || || || ||||| Sbjct 3413527 AAAGATGCTGGTCGTATTGCTGGATTGGAAGTTCTTCGTATCATAAACGAGCCAACTGCA 3413586 Query 550511 GCTGCACTTGCATATGGACTTGATAA 550536 || || | || |||||| |||| || Sbjct 3413587 GCATCATTGGCTTATGGATTTGAAAA 3413612 >seq7 Length=14728688 Score = 91.5 bits (100), Expect = 1e-12 Identities = 149/212 (70%), Gaps = 2/212 (1%) Strand=Plus/Plus Query 549995 ATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAAGTT 550054 || ||||||||| | || ||||| ||| ||||||||||| | | |||||| | || Sbjct 12323915 ATCGGTATAGATCTCGGCACCACCTATTCGTGTGTTGGTGTCTACAAGAATGGTCATGTG 12323974 Query 550055 GAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACGGA- 550113 || || || || || || ||||| ||| | | || ||||| | || | ||||| || Sbjct 12323975 GAGATCATAGCAAACGACCAAGGAAACCGTATCACCCCATCATGGGTCGCATTCACAGAT 12324034 Query 550114 AACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAATAC 550173 ||| | ||| | ||||||| || ||||| | ||||| ||| ||| || | || Sbjct 12324035 AACGAGAGATTGA-TTGGTGAGGCTGCAAAGAACCAAGCAGCTGTAAATGCTGAAAGGAC 12324093 Query 550174 TATTTTTGATGCTAAACGTTTAATTGGAAGAA 550205 | ||||||||| || ||| | |||||||||| Sbjct 12324094 TGTTTTTGATGTCAAGCGTCTTATTGGAAGAA 12324125 >seq22 Length=10398566 Score = 87.8 bits (96), Expect = 1e-11 Identities = 146/211 (69%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 549995 ATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAAGTT 550054 || ||||||||| | || ||||| ||| || |||||||| | | |||||| | || Sbjct 9027292 ATTGGTATAGATCTCGGCACCACCTATTCATGCGTTGGTGTCTACAAGAATGGTCATGTG 9027351 Query 550055 GAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACGGAA 550114 || ||||| || ||||| ||||| ||| | | || ||||| | || | |||||||| Sbjct 9027352 GAGATTATAGCTAATGACCAAGGAAACCGCATCACCCCATCGTGGGTGGCGTTCACGGAT 9027411 Query 550115 ACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAATACT 550174 | ||| || ||||||| || || || | || || ||| ||| | | ||| Sbjct 9027412 AGTGAGAGGTTGATTGGTGAGGCTGCGAAGAACCAGGCAGCTGTAAATGCCGAGAGAACT 9027471 Query 550175 ATTTTTGATGCTAAACGTTTAATTGGAAGAA 550205 |||||||||| || ||| | || ||||||| Sbjct 9027472 ATTTTTGATGTCAAGCGTCTCATCGGAAGAA 9027502 >seq18 Length=10911977 Score = 87.8 bits (96), Expect = 1e-11 Identities = 96/128 (75%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 550409 ACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATT 550468 || || || || || || || ||||| || || || || ||||||||||| || ||| Sbjct 10391528 ACCGTCCCTGCCTACTTCAACGACTCTCAGCGGCAGGCCACTAAAGATGCAGGTGTCATT 10391469 Query 550469 GCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGA 550528 || || || ||||| | |||||||| |||||||| || || ||||| |||| ||||| Sbjct 10391468 GCCGGCCTCAATGTCATGCGTATTATTAATGAACCCACAGCGGCTGCTATTGCCTATGGG 10391409 Query 550529 CTTGATAA 550536 ||||| || Sbjct 10391408 CTTGACAA 10391401 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4029130524368210