Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ananas_20comosus_20[refseq_20GCF_5F001540865.1_202016-03-14] 3,129 sequences; 382,055,938 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq3 131 1e-25 seq7 111 1e-19 seq8 109 4e-19 seq10 107 2e-18 >seq3 Length=16781886 Score = 131 bits (144), Expect = 1e-25 Identities = 155/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 101260 AACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTC 101319 ||| ||||||||||| || || ||||| || ||||| || | | || | | |||| || Sbjct 16131921 AACCAAATGAAGGGTGGACTCCTTTTGGATGTTGTACTCTGATAAGGTCCGGCCATCCTC 16131862 Query 101320 CAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTG 101379 ||||||||| || |||||||| | ||||| |||||||| | || |||||||| ||||| Sbjct 16131861 CAATTGCTTCCCAGCAAATATGAGCCGCTGCTGATCGGGAAGGATTCCTTCTTTGTCTTG 16131802 Query 101380 AATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTT 101439 |||||| || | |||| | |||||||| | || || || ||||||| || || Sbjct 16131801 AATTTTACCCTTCAGGTTTTCAATTGTGTCAGAGCTCTCAACCTCGAGAGTGATGGTCTT 16131742 Query 101440 GCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || || | || || ||||| |||||||| Sbjct 16131741 TCCAGTGAGGGTCTTCACAAAAATCTGCAT 16131712 Score = 131 bits (144), Expect = 1e-25 Identities = 155/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 101260 AACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTC 101319 ||| ||||||||||| || || ||||| || ||||| || | | || | | |||| || Sbjct 16199725 AACCAAATGAAGGGTGGACTCCTTTTGGATGTTGTACTCTGATAAGGTCCGGCCATCCTC 16199666 Query 101320 CAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTG 101379 ||||||||| || |||||||| | ||||| |||||||| | || |||||||| ||||| Sbjct 16199665 CAATTGCTTCCCAGCAAATATGAGCCGCTGCTGATCGGGAAGGATTCCTTCTTTGTCTTG 16199606 Query 101380 AATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTT 101439 |||||| || | |||| | |||||||| | || || || ||||||| || || Sbjct 16199605 AATTTTACCCTTCAGGTTTTCAATTGTGTCAGAGCTCTCAACCTCGAGAGTGATGGTCTT 16199546 Query 101440 GCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || || | || || ||||| |||||||| Sbjct 16199545 TCCAGTGAGGGTCTTCACAAAAATCTGCAT 16199516 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 || ||||| ||||| | ||| | ||| || || |||||||| || | ||||||||||| Sbjct 16131710 CCCCCTCTCAAACGGAGAACAAGATGGAGAGTTGATTCTTTCTGAACATTGTAATCGGAC 16131651 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | |||||| | || || | |||||| || ||||| || | | ||| || || | || Sbjct 16131650 AGAGTTCTCCCGTCCTCGAGTTGCTTGCCAGCAAAGATGAGCCTCTGCTGGTCTGAGGGG 16131591 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 |||||||| || || ||||||||| || || | || | || ||||| || || || Sbjct 16131590 ATGCCTTCCTTGTCCTGAATTTTTGCCTTGACGTTCTCAATTGTATCAGAGGTCTCAACC 16131531 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATG 101470 || ||||| | || || ||||| | || || ||||| ||||||||| Sbjct 16131530 TCCAGAGTTATGGTCTTTCCGGTAAGGGTCTTGACAAAAATCTGCATG 16131483 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 || ||||| ||||| | ||| | ||| || || |||||||| || | ||||||||||| Sbjct 16199514 CCCCCTCTCAAACGGAGAACAAGATGGAGAGTTGATTCTTTCTGAACATTGTAATCGGAC 16199455 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | |||||| | || || | |||||| || ||||| || | | ||| || || | || Sbjct 16199454 AGAGTTCTCCCGTCCTCGAGTTGCTTGCCAGCAAAGATGAGCCTCTGCTGGTCTGAGGGG 16199395 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 |||||||| || || ||||||||| || || | || | || ||||| || || || Sbjct 16199394 ATGCCTTCCTTGTCCTGAATTTTTGCCTTGACGTTCTCAATTGTATCAGAGGTCTCAACC 16199335 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATG 101470 || ||||| | || || ||||| | || || ||||| ||||||||| Sbjct 16199334 TCCAGAGTTATGGTCTTTCCGGTAAGGGTCTTGACAAAAATCTGCATG 16199287 >seq7 Length=14728688 Score = 111 bits (122), Expect = 1e-19 Identities = 147/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 |||||||| ||||| || || || ||||| ||||||| || | | | || || | ||| Sbjct 13850313 TGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGGCCGTCCTCGAGCTGC 13850254 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 ||||||||||| |||| |||||| || || || || || || || || || || || || Sbjct 13850253 TTACCTGCAAAGATCAGACGCTGCTGGTCCGGTGGGATCCCCTCCTTGTCCTGGATCTTC 13850194 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 || ||| | || | ||||| || | || || || || |||| ||| |||||||| Sbjct 13850193 GCCTTGACATTGTCGATGGTGTCGGAGCTCTCGACCTCGAGGGTGATCGTCTTGCCGGTG 13850134 Query 101447 AAAGTTTTTACAAATATCTGCATG 101470 | || || || || ||||||||| Sbjct 13850133 AGGGTCTTGACGAAGATCTGCATG 13850110 >seq8 Length=13970067 Score = 109 bits (120), Expect = 4e-19 Identities = 146/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 |||||||| ||||| || || || |||||||| || | || | | |||| || | ||| Sbjct 10823292 TGAAGGGTGGATTCCTTCTGGATGTTGTAATCCGCCAGGGTGCGGCCATCCTCAAGCTGC 10823351 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 || || || || ||||||||||| || || |||||||| || || || || ||||| || Sbjct 10823352 TTCCCAGCGAAGATCAAACGCTGCTGGTCCGGCGGAATCCCCTCCTTGTCCTGAATCTTA 10823411 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 || ||| | || | ||| || || | || || || | |||| ||| |||||||| Sbjct 10823412 GCCTTCACATTATCAATAGTATCGGAGCTCTCAACCTCCAAGGTGATCGTCTTGCCGGTG 10823471 Query 101447 AAAGTTTTTACAAATATCTGCAT 101469 | || || ||||| || ||||| Sbjct 10823472 AGGGTCTTGACAAAGATTTGCAT 10823494 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 ||||| |||| || | ||| | || || || || || || || || ||||| |||||| Sbjct 10824180 CCTCCCCTTAGGCGAAGAACGAGGTGGAGCGTGGACTCCTTCTGGATGTTGTAGTCGGCG 10824239 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | || | | | || || | ||||| || || || || | ||||| || || || ||| Sbjct 10824240 AGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATAAGCCGCTGCTGGTCCGGGGGA 10824299 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 |||||||| || || || || || || ||| | || | |||||||| | ||||| Sbjct 10824300 ATGCCTTCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATGGTGTCAGAGCTCTCCACC 10824359 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 ||||| |||| || |||||||| | ||||| || || |||||||| Sbjct 10824360 TCAAGGGTGATGGTCTTGCCGGTGAGGGTTTTCACGAAGATCTGCAT 10824406 >seq10 Length=13112115 Score = 107 bits (118), Expect = 2e-18 Identities = 150/207 (72%), Gaps = 4/207 (2%) Strand=Plus/Plus Query 101266 ATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATA-GTTCTGG-CATCGTCCAAT 101323 ||||||||| ||||| ||||| |||||||| || ||||| | | | |||| |||||| Sbjct 3654289 ATGAAGGGTGGATTCCTTTTGAATATTGTAGTC--CGATAAGCACCGATCATCCTCCAAT 3654346 Query 101324 TGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATT 101383 ||||| ||||| || |||| ||||| || || || || ||||| || || || || || Sbjct 3654347 TGCTTCCCTGCGAAGATCAGCCGCTGCTGGTCAGGAGGGATGCCCTCCTTGTCCTGGATC 3654406 Query 101384 TTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCG 101443 || || ||| | | || ||||| || | || || || ||||||| || || ||| Sbjct 3654407 TTCGACTTCACATTGGCAACGGTGTCGGAGCTCTCGACCTCGAGAGTGATGGTCTTTCCG 3654466 Query 101444 GTTAAAGTTTTTACAAATATCTGCATG 101470 || | || || || || ||||||||| Sbjct 3654467 GTGAGGGTCTTCACGAAGATCTGCATG 3654493 Score = 105 bits (116), Expect = 5e-18 Identities = 141/196 (72%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 ||||||||||| || || || | ||||||||| || ||| | ||| ||||| ||| Sbjct 3658448 TGAAGGGTAGACTCCTTCTGCACATTGTAATCCCTGAGAGTGCGATTATCCTCCAACTGC 3658507 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 ||||| ||||| || | | |||||| ||| | |||||||| || ||||| || || || Sbjct 3658508 TTACCAGCAAAGATGAGCCTCTGTTGGTCGTGGGGAATGCCCTCCTTATCCTGGATCTTA 3658567 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 || ||| |||| | ||||| || | || || |||||||| | || ||||| ||| Sbjct 3658568 GCCTTCACATTTTCAATCGTGTCGGAGCTCTCAACCTCAAGAGTAATAGTCTTGCCTGTT 3658627 Query 101447 AAAGTTTTTACAAATA 101462 ||| || ||| ||| Sbjct 3658628 GGAGTATTCACATATA 3658643 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396263288047053