Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ananas_20comosus_20[refseq_20GCF_5F001540865.1_202016-03-14] 3,129 sequences; 382,055,938 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq8 118 8e-22 seq10 89.7 4e-13 seq7 86.0 5e-12 seq1443 84.2 2e-11 seq13 84.2 2e-11 seq3 84.2 2e-11 seq12 82.4 6e-11 >seq8 Length=13970067 Score = 118 bits (130), Expect = 8e-22 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 48539 GCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGA 48598 ||| ||||| |||| |||||| | || || ||| |||||| || || |||||||| | Sbjct 10823723 GCCCCCCCTCAGCCTCAACACGAGGTGGAGGGTGGACTCTTTCTGGATGTTGTAATCCGC 10823782 Query 48599 TAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGG 48658 || | || | || || | |||||| ||||| || ||||| ||||| ||||||| ||| Sbjct 10823783 AAGTGTGCGGCCATCCTCGAGCTGCTTCCCGGCGAAGATCAGACGCTGCTGATCCGGGGG 10823842 Query 48659 AACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCAC 48718 || ||||||||| || |||||| || ||| | | | | || || |||||| Sbjct 10823843 AATGCCCTCCTTATCCTGAATCTTGGCCTTGACATTATCGATGGTGTCGGAGCTCTCCAC 10823902 Query 48719 CTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 ||| | ||||| || || ||||| | || || || ||||||||||| Sbjct 10823903 CTCAAGGGTAATAGTCTTACCCGTGAGGGTCTTCACGAAAATCTGCAT 10823950 >seq10 Length=13112115 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 ||||| | || || | ||| | ||| || ||| || |||||||||||||| || ||| Sbjct 3654266 CCGCCGCGAAGACGAAGCACGAGATGAAGGGTGGATTCCTTTTGAATATTGTAGTCCGAT 3654325 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 | | ||||| || ||||| ||||| || || || ||||| ||||| || || | || Sbjct 3654326 AAGCACCGATCATCCTCCAATTGCTTCCCTGCGAAGATCAGCCGCTGCTGGTCAGGAGGG 3654385 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | |||||||||||| ||||| || ||| | || | || || ||| ||| Sbjct 3654386 ATGCCCTCCTTGTCCTGGATCTTCGACTTCACATTGGCAACGGTGTCGGAGCTCTCGACC 3654445 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || | || || || ||||| || | || || || || |||||||| Sbjct 3654446 TCGAGAGTGATGGTCTTTCCGGTGAGGGTCTTCACGAAGATCTGCAT 3654492 >seq7 Length=14728688 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 ||||| | || || | || | ||| || ||| || ||||| || ||||| || | Sbjct 13849653 CCGCCGCGGAGACGGAGGACAAGATGAAGGGTGGATTCCTTTTGGATGTTGTAGTCGGCG 13849594 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 || | || |||| || | |||||| ||||| || || || ||||| ||||||| |||| Sbjct 13849593 AGGGTGCGGCCGTCCTCGAGCTGCTTCCCGGCGAAGATGAGACGCTGCTGATCCGGGGGA 13849534 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | ||||||||||| ||||| || ||| | | | || || ||||||| Sbjct 13849533 ATCCCCTCCTTGTCCTGGATCTTGGCCTTCACATTGTCGATGGTGTCGGAGCTCTCCACC 13849474 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || | || ||||| || ||||| | ||||| || || |||||||| Sbjct 13849473 TCAAGGGTGATCGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCAT 13849427 >seq1443 Length=10899 Score = 84.2 bits (92), Expect = 2e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 48576 TCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAAT 48635 || || || || ||||| || | ||| | || |||| |||||||||||||||||||| Sbjct 7988 TCCTTCTGGATGTTGTAGTCCGCCAGAGTGCGGCCGTCCTCCAACTGCTTACCGGCAAAG 8047 Query 48636 ATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAA 48695 || || ||||| || |||| || | |||||||||||| ||||| ||| || Sbjct 8048 ATGAGCCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGGATCTTAGCTTTGACGTTG 8107 Query 48696 CCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACA 48755 | | | || || | ||| ||||| | || || || || || |||| || || || Sbjct 8108 TCGATCGTGTCGGAGGACTCGACCTCGAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACG 8167 Query 48756 AAAATCTGCAT 48766 || |||||||| Sbjct 8168 AAGATCTGCAT 8178 >seq13 Length=11759267 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 48564 TGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGC 48623 || ||||| ||| || || || ||||| || | ||| ||| |||| || | |||| Sbjct 11348162 TGGAGCGTCGACTCCTTCTGGATGTTGTAGTCCGCTAGGGTTCTCCCGTCCTCGAGCTGC 11348103 Query 48624 TTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTT 48683 || || || || || || ||||| ||||||| ||| | ||||||||||| ||||| Sbjct 11348102 TTCCCCGCGAAGATGAGGCGCTGCTGATCCGGGGGGATCCCCTCCTTGTCCTGGATCTTC 11348043 Query 48684 TGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTC 48743 || || | | | || || | ||||||||||| || ||||| || ||||| Sbjct 11348042 GCCTTCACGTTGTCGATCGTGTCCGAGGACTCCACCTCCAGGGTGATCGTCTTCCCCGTT 11347983 Query 48744 AAAGTTTTTACAAAAATCTGCATC 48767 | ||||| || || ||||||||| Sbjct 11347982 AGGGTTTTCACGAAGATCTGCATC 11347959 >seq3 Length=16781886 Score = 84.2 bits (92), Expect = 2e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 48576 TCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAAT 48635 ||||| |||| ||||||||| || ||| ||| |||| || | ||||| || ||||| Sbjct 16131674 TCTTTCTGAACATTGTAATCGGACAGAGTTCTCCCGTCCTCGAGTTGCTTGCCAGCAAAG 16131615 Query 48636 ATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAA 48695 || || | ||| || || | ||| | ||| |||||||| ||| ||| || || Sbjct 16131614 ATGAGCCTCTGCTGGTCTGAGGGGATGCCTTCCTTGTCCTGAATTTTTGCCTTGACGTTC 16131555 Query 48696 CCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACA 48755 | | | || || | ||| ||||||| || || || ||||| || | || || ||| Sbjct 16131554 TCAATTGTATCAGAGGTCTCAACCTCCAGAGTTATGGTCTTTCCGGTAAGGGTCTTGACA 16131495 Query 48756 AAAATCTGCAT 48766 ||||||||||| Sbjct 16131494 AAAATCTGCAT 16131484 Score = 84.2 bits (92), Expect = 2e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 48576 TCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAAT 48635 ||||| |||| ||||||||| || ||| ||| |||| || | ||||| || ||||| Sbjct 16199478 TCTTTCTGAACATTGTAATCGGACAGAGTTCTCCCGTCCTCGAGTTGCTTGCCAGCAAAG 16199419 Query 48636 ATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAA 48695 || || | ||| || || | ||| | ||| |||||||| ||| ||| || || Sbjct 16199418 ATGAGCCTCTGCTGGTCTGAGGGGATGCCTTCCTTGTCCTGAATTTTTGCCTTGACGTTC 16199359 Query 48696 CCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACA 48755 | | | || || | ||| ||||||| || || || ||||| || | || || ||| Sbjct 16199358 TCAATTGTATCAGAGGTCTCAACCTCCAGAGTTATGGTCTTTCCGGTAAGGGTCTTGACA 16199299 Query 48756 AAAATCTGCAT 48766 ||||||||||| Sbjct 16199298 AAAATCTGCAT 16199288 >seq12 Length=12612916 Score = 82.4 bits (90), Expect = 6e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 48539 GCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGA 48598 |||||| | || || | ||| | || ||||| ||| || || || ||||| || | Sbjct 12401014 GCCGCCACGGAGACGGAGCACGAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCTGC 12400955 Query 48599 TAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGG 48658 ||| | ||| |||| ||||||||||| ||||| || |||| ||||| || |||| ||| Sbjct 12400954 AAGAGTCCGACCGTCCTCCAACTGCTTGCCGGCGAAGATCAACCGCTGCTGGTCCGGGGG 12400895 Query 48659 AACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCAC 48718 | ||||||||||| || || || ||| | | | || || | ||| || Sbjct 12400894 GATCCCCTCCTTGTCCTGGATTTTGGCCTTGACATTGTCGATGGTGTCGGAGGACTCGAC 12400835 Query 48719 CTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 ||| | || || || || || |||| || || || || |||||||| Sbjct 12400834 CTCGAGGGTGATGGTCTTGCCGGTCAGGGTCTTGACGAAGATCTGCAT 12400787 Score = 82.4 bits (90), Expect = 6e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 48539 GCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGA 48598 |||||| | || || | ||| | || ||||| ||| || || || ||||| || | Sbjct 12401242 GCCGCCACGGAGACGGAGCACGAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCCGC 12401183 Query 48599 TAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGG 48658 ||| | || |||| ||||||||||| ||||| || ||||| ||||| || |||| || Sbjct 12401182 CAGAGTGCGGCCGTCCTCCAACTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCCGGCGG 12401123 Query 48659 AACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCAC 48718 | ||||||||||| || ||| || ||| | | | || || | ||| || Sbjct 12401122 GATCCCCTCCTTGTCCTGGATTTTTGCCTTAACATTGTCGATGGTGTCGGAGGACTCGAC 12401063 Query 48719 CTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 ||| | || || || || || |||| || || || || |||||||| Sbjct 12401062 CTCGAGGGTGATGGTCTTGCCGGTCAGGGTCTTGACGAAGATCTGCAT 12401015 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380923073063667