Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ananas_20comosus_20[refseq_20GCF_5F001540865.1_202016-03-14] 3,129 sequences; 382,055,938 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq433 210 4e-49 seq21 205 2e-47 seq2 104 4e-17 seq336 96.9 6e-15 seq13 96.9 6e-15 seq647 95.1 2e-14 seq300 95.1 2e-14 >seq433 Length=30188 Score = 210 bits (232), Expect = 4e-49 Identities = 565/859 (66%), Gaps = 14/859 (2%) Strand=Plus/Minus Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898 |||||| || || || | ||||| |||||||| ||||| |||| | |||||| ||| Sbjct 24534 CTGGTACTCGCCGACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGGAGGGAGATGAGCTC 24475 Query 47899 CATGAAGAGGAAGGGGTTGGGTGTGTTATACACCCGTGTCAGGCCCATCTGTTCCAGCAG 47958 ||| || ||||||||||| | |||| | | ||| | | || || Sbjct 24474 CATCCAGTCGAAGGGGTTGGCGACGGCGTACATCTTGGCGCAGCCGAGGGCGGCGAGGAG 24415 Query 47959 GTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGGGA 48018 | | || |||||| |||||||||| | ||||||| | ||||||||| | ||||| Sbjct 24414 GCGGTCGGCGACGAACTCGATGTACTGGCTCATGAGGCGGCCGTTCATGCCGACGAGGGC 24355 Query 48019 CACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATCTG 48078 ||||| | || | || ||||| ||| || | ||||| || | || || Sbjct 24354 GACGGGGAGGGCGTCGCAGACGAACTCGCGCTCGATGTCGACGGCGTCGCGGACGATGGC 24295 Query 48079 CTTAACGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGGCAAA 48138 ||||||| ||| | | | | ||| ||| | || ||||| | |||||| || Sbjct 24294 GCGGACGCGGGGCTCGGGGAGGCGGCGGCGGAGGAG---GGAGTAGAGGAGGCAGGCGAA 24238 Query 48139 GTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGCAT 48198 ||| | ||| | ||| ||||| ||| ||||||| ||||||||||| ||| || ||||| Sbjct 24237 GTCGCAGTGGAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCGGGCAT 24178 Query 48199 GACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCCTC 48258 || || | || ||||||||||| || || ||| ||||| |||||||||| |||||| Sbjct 24177 GAGGCCGCGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCGGAGAAGAAGACGCCCTC 24118 Query 48259 CACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGT-TCTTGTCTGAGATCCAGG 48317 || ||||| ||| ||| | ||| |||| || |||| | ||| ||||||| Sbjct 24117 GACGCAGGCGAAGGCGACGAGGCGCTCGGCGAAGGAGGCGTCGGGGGACTG-GATCCAGC 24059 Query 48318 AAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGGAAGA--- 48374 |||||||| | ||||| || ||| || | || || | ||| ||||||| Sbjct 24058 GCAGCGCCCACGCGGCCTTGCGGGCGACGCAGGGGACGGTGTCGACGGCGCGGAAGAGGC 23999 Query 48375 GCTTCTTGCACTCACCTGCGTCCGCAACATAGGTAGTGAGCAGCTTTGCGTACATCTCAG 48434 | | ||| ||| | ||| | ||||| ||| || | ||||||||| | Sbjct 23998 GGTCCTT---CTCGAGGGGGTCGCGGATGTAGGTCTCGAGGAGGAGGGAGTACATCTCCG 23942 Query 48435 AGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACACCTGCA 48494 |||| | ||||| || ||||||||||| ||||||||||| | |||||| ||||| | Sbjct 23941 AGTGGATGTTCTCGATCGCGATCTGGAAGCCGTAGAAGGCGCGGGCCTCGGCGACCTGGA 23882 Query 48495 CTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCAGCAAAGA 48554 | || | ||| | || ||||| ||| || || || || || || |||| Sbjct 23881 CCTCGGCCATGAAGCGGGAGGCGAGGTTCTCGAGGACGATGCCGTCGGAGGCGGCGAAGA 23822 Query 48555 AGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGCA---TTCCAGCCCT 48611 |||| || || || | ||| | || |||| | || ||| ||| | |||| | Sbjct 23821 AGGCGAGCACGTGGGAGACGAACCGCCGGTCGTCGCCGGAGAGCGCAAGCTCCCAGTGCC 23762 Query 48612 GTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGAGTGCTTTTTTGT 48671 | | ||| | |||||||| || || | |||||||| ||||| | || || |||| Sbjct 23761 GGAGGTCGCCGGAGAGGTCCACCTCCTCGGCGGTCCAGAACGACGCCACGGCCTTCTTGT 23702 Query 48672 ACATGCCCCATATGTCCGG 48690 | | |||| ||| |||| Sbjct 23701 AGAACTCCCAGATGCCCGG 23683 >seq21 Length=10645290 Score = 205 bits (226), Expect = 2e-47 Identities = 564/859 (66%), Gaps = 14/859 (2%) Strand=Plus/Minus Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898 |||||| || || || | ||||| |||||||| ||||| |||| | |||||| ||| Sbjct 999755 CTGGTACTCGCCGACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGGAGGGAGATGAGCTC 999696 Query 47899 CATGAAGAGGAAGGGGTTGGGTGTGTTATACACCCGTGTCAGGCCCATCTGTTCCAGCAG 47958 ||| || ||||||||||| | |||| | | ||| | | || || Sbjct 999695 CATCCAGTCGAAGGGGTTGGCGACGGCGTACATCTTGGCGCAGCCGAGGGCGGCGAGGAG 999636 Query 47959 GTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGGGA 48018 | | || |||||| |||||||||| | ||||||| | ||||||||| | ||||| Sbjct 999635 GCGGTCGGCGACGAACTCGATGTACTGGCTCATGAGGAGGCCGTTCATGCCGACGAGGGC 999576 Query 48019 CACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATCTG 48078 ||||| | || | || ||||| ||| || | ||||| || | || || Sbjct 999575 GACGGGGAGGGCGTCGCAGACGAACTCGCGCTCGATGTCGACGGCGTCGCGGACGATGGC 999516 Query 48079 CTTAACGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGGCAAA 48138 ||||||| ||| | | | | ||| ||| | || ||||| | |||||| || Sbjct 999515 GCGGACGCGGGGCTCGGGGAGGCGGCGGCGGAGGAG---GGAGTAGAGGAGGCAGGCGAA 999459 Query 48139 GTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGCAT 48198 ||| | ||| | ||| ||||| ||| ||||||| ||||||||||| ||| || ||||| Sbjct 999458 GTCGCAGTGGAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCGGGCAT 999399 Query 48199 GACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCCTC 48258 || || | || ||||||||||| || || ||| ||||| |||||||||| |||||| Sbjct 999398 GAGGCCGCGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCGGAGAAGAAGACGCCCTC 999339 Query 48259 CACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGT-TCTTGTCTGAGATCCAGG 48317 || ||||| ||| ||| | ||| |||| || |||| | ||| ||||||| Sbjct 999338 GACGCAGGCGAAGGCGACGAGGCGCTCGGCGAAGGAGGCGTCGGGGGACTG-GATCCAGC 999280 Query 48318 AAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGGAAGA--- 48374 |||||||| | ||||| || ||| || | || || | ||| ||||||| Sbjct 999279 GCAGCGCCCACGCGGCCTTGCGGGCGACGCAGGGGACGGTGTCGACGGCGCGGAAGAGGC 999220 Query 48375 GCTTCTTGCACTCACCTGCGTCCGCAACATAGGTAGTGAGCAGCTTTGCGTACATCTCAG 48434 | | ||| ||| | ||| | ||||| ||| || | ||||||||| | Sbjct 999219 GGTCCTT---CTCGAGGGGGTCGCGGATGTAGGTCTCGAGGAGGAGGGAGTACATCTCCG 999163 Query 48435 AGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACACCTGCA 48494 |||| | ||||| || ||||||||||| ||||||||||| | |||||| ||||| | Sbjct 999162 AGTGGATGTTCTCGATCGCGATCTGGAAGCCGTAGAAGGCGCGGGCCTCGGCGACCTGGA 999103 Query 48495 CTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCAGCAAAGA 48554 | || | ||| | || ||||| ||| || || || || || || |||| Sbjct 999102 CCTCGGACATGAAGCGGGAGGCGAGGTTCTCGAGGACGATGCCGTCGGAGGCGGCGAAGA 999043 Query 48555 AGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGC---ATTCCAGCCCT 48611 |||| || || || | ||| | || |||| | || ||| || | |||| | Sbjct 999042 AGGCGAGCACGTGGGAGACGAACCGCCGGTCGTCGCCGGAGAGCGCGAGCTCCCAGTGCC 998983 Query 48612 GTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGAGTGCTTTTTTGT 48671 | | ||| | |||||||| || || | |||||||| ||||| | || || |||| Sbjct 998982 GGAGGTCGCCGGAGAGGTCCACCTCCTCGGCGGTCCAGAACGACGCCACGGCCTTCTTGT 998923 Query 48672 ACATGCCCCATATGTCCGG 48690 | | |||| ||| |||| Sbjct 998922 AGAACTCCCAGATGCCCGG 998904 >seq2 Length=17334668 Score = 104 bits (114), Expect = 4e-17 Identities = 127/173 (73%), Gaps = 3/173 (2%) Strand=Plus/Minus Query 48122 TAGAGCATGCAGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAG 48181 ||||| | ||| || ||||| | ||| | ||| ||||| ||| ||||||| |||||||| Sbjct 14397024 TAGAGGAGGCAAGCGAAGTCGCAGTGGAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAG 14396965 Query 48182 AAGCAGAGACCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCA 48241 ||| ||| || ||||||| || | || ||||||||||| || || | | ||||| Sbjct 14396964 AAGGTGAGCCCGGGCATGAGGCCACGCTTCTTGAGCCAGAAGATGGCTCAGCAGGAGCCG 14396905 Query 48242 GAGAAGAAGATGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGA 48294 |||||||| |||||| || ||||| ||| ||| | ||| ||||||| Sbjct 14396904 GAGAAGAA---GCCCTCGACGCAGGCGAAGGCGACGAGGCGCTCGGCGAAAGA 14396855 >seq336 Length=33712 Score = 96.9 bits (106), Expect = 6e-15 Identities = 128/176 (73%), Gaps = 4/176 (2%) Strand=Plus/Minus Query 48122 TAGAGCATGCAGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAG 48181 ||||| | |||||| ||||| | ||| | ||| ||||| ||| ||||||| ||||||| Sbjct 19117 TAGAGGAGGCAGGCGAAGTCGCAGTGGAGGCCCTCGTCGCGGGAGATGAGCTTGTTGGAG 19058 Query 48182 AAGCAGAGACCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCA 48241 ||| ||| || ||||||| || | || ||||||||||| || || | | ||||| Sbjct 19057 AAGGTGAGCCCGGGCATGAGGCCACGCTTCTTGAGCCAGAAGATGGCTCAGCAGGAGCCG 18998 Query 48242 GAGAAGAAGATGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGC 48297 |||||||| |||||| || ||||| ||| || | ||| || ||||||| Sbjct 18997 GAGAAGAA---GCCCTCGACGCAGGCGAAGGCGACGAAGCGCTCGGCG-AAGAAGC 18946 >seq13 Length=11759267 Score = 96.9 bits (106), Expect = 6e-15 Identities = 128/177 (72%), Gaps = 3/177 (2%) Strand=Plus/Plus Query 48118 GGCATAGAGCATGCAGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTT 48177 ||| ||||| | |||||| ||||| | ||| | ||| | ||| || || |||| |||| Sbjct 9967731 GGCGTAGAGGACGCAGGCGAAGTCGCAGTGGAGGCCCTTGTCGTGGGAGACGAGCTCGTT 9967790 Query 48178 GGAGAAGCAGAGACCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGA 48237 ||||||| ||| || ||||||| || | || ||||||||||| || || | | || Sbjct 9967791 GGAGAAGGTGAGCCCGGGCATGAGGCCACGCTTCTTGAGCCAGAAGATGGCTCAGCAGGA 9967850 Query 48238 GCCAGAGAAGAAGATGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGA 48294 ||| |||||||| |||||| || ||||| ||| ||| | ||| ||||||| Sbjct 9967851 GCCGGAGAAGAA---GCCCTCGACGCAGGCGAAGGCGACGAGGCGCTCGGCGAAAGA 9967904 >seq647 Length=24519 Score = 95.1 bits (104), Expect = 2e-14 Identities = 125/173 (72%), Gaps = 3/173 (2%) Strand=Plus/Plus Query 48122 TAGAGCATGCAGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAG 48181 ||||| | |||||| ||||| | ||| | ||| ||||| ||| ||||||| ||||||| Sbjct 9954 TAGAGGAGGCAGGCGAAGTCGCAGTGGAGGCCCTCGTCGCGGGAGATGAGCTTGTTGGAG 10013 Query 48182 AAGCAGAGACCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCA 48241 ||| ||| || |||||| || ||| ||||||||||| || || | | ||||| Sbjct 10014 AAGGTGAGCCCGAGCATGAGGCCATTCTTCTTGAGCCAGAAGATGGCTCAGCAGGAGCCG 10073 Query 48242 GAGAAGAAGATGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGA 48294 |||||||| |||||| || || || ||| ||| | ||| ||||||| Sbjct 10074 GAGAAGAA---GCCCTCGACGCAGGCAAAGGCGACGAGGCGCTCGGCGAAAGA 10123 >seq300 Length=35074 Score = 95.1 bits (104), Expect = 2e-14 Identities = 125/173 (72%), Gaps = 3/173 (2%) Strand=Plus/Plus Query 48122 TAGAGCATGCAGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAG 48181 ||||| | |||||| ||||| | ||| | ||| || || ||| ||||||| ||||||| Sbjct 28714 TAGAGGAGGCAGGCGAAGTCGCAGTGGAGGCCCTCATCGCGGGAGATGAGCTTGTTGGAG 28773 Query 48182 AAGCAGAGACCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCA 48241 ||| ||| || ||||||| || | || ||||||||||| || || | | ||||| Sbjct 28774 AAGGTGAGCCCGGGCATGAGGCCACGCTTCTTGAGCCAGAAGATGGCTCAGCAGGAGCCG 28833 Query 48242 GAGAAGAAGATGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGA 48294 |||||||| |||||| || ||||| ||| ||| | ||| |||| || Sbjct 28834 GAGAAGAA---GCCCTCGACGTAGGCGAAGGCGACGAGGCGCTCGGCGAAGGA 28883 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931496365423360