Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ananas_20comosus_20[refseq_20GCF_5F001540865.1_202016-03-14] 3,129 sequences; 382,055,938 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq21 149 1e-30 seq433 147 4e-30 seq647 113 8e-20 seq2 104 4e-17 seq336 98.7 2e-15 seq300 95.1 2e-14 seq13 89.7 1e-12 >seq21 Length=10645290 Score = 149 bits (164), Expect = 1e-30 Identities = 384/574 (67%), Gaps = 17/574 (3%) Strand=Plus/Plus Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536 || |||||| | ||||||||||| || |||||||||||| ||| | || || Sbjct 998910 ATCTGGGAGTTCTACAAGAAGGCCGTGGCGTCGTTCTGGACCGCCGAGGAGGTGGACCTC 998969 Query 25537 GCCAAGGACATGGACGGC--TGGTA---CGCTCTATCCAAAGACGAGCAGCATTTTCTCA 25591 || ||| | |||| ||| | ||| || ||| ||||| | || || || Sbjct 998970 TCCGGCGACCTC--CGGCACTGGGAGCTCGCGCTCTCCGGCGACGACCGGCGGTTCGTCT 999027 Query 25592 AGTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGA 25651 ||||| | || ||||| || ||||| || || || || |||||| || | Sbjct 999028 CCCACGTGCTCGCCTTCTTCGCCGCCTCCGACGGCATCGTCCTCGAGAACCTCGCCTCCC 999087 Query 25652 GATTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCA 25711 | |||| || || ||| || |||||| |||||||| |||||||| || | Sbjct 999088 GCTTCATGTCCGAGGTCCAGGTCGCCGAGGCCCGCGCCTTCTACGGCTTCCAGATCGCGA 999147 Query 25712 TCGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATGACGTACATTACAGACGTCG 25771 |||| || | ||||| ||| |||| || || || ||| ||||| ||| | Sbjct 999148 TCGAGAACATCCACTCGGAGATGTACTCCCTCCTCCTCGAGACCTACATCCGCGACCCCC 999207 Query 25772 CCGAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGCGC 25831 ||||| || || || || | ||| |||| | | ||| || || | ||||| Sbjct 999208 TCGAGAAGGACCGCCTCTTCCGCGCCGTCGACACCGTCCCCTGCGTCGCCCGCAAGGCCG 999267 Query 25832 GGTGGGCCATGAAGTGGATCAACAG---CCAGAGCGCTACGTTTGGCGAGCGGCTGGTAG 25888 |||||| || |||||| ||| || || ||| | || | |||||| || || | Sbjct 999268 CGTGGGCGCTGCGCTGGATC--CAGTCCCCCGA-CGCCTCCTTCGCCGAGCGCCTCGTCG 999324 Query 25889 CCTTTGC-TGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTT-TGCGGCCATCTTCTGGCT 25946 |||| || ||| || |||||| |||| ||| ||| || || |||| ||||||||||||| Sbjct 999325 CCTTCGCCTGC-GTCGAGGGCGTCTTCTTCTCCGGCTCCTTCTGCG-CCATCTTCTGGCT 999382 Query 25947 CAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGA 26006 |||| || || ||||||||| || ||| ||||||||||||||| | | ||||| Sbjct 999383 CAAGAAGCGCGGCCTCATGCCCGGCCTCACCTTCTCCAACGAGCTCATCTCCCGCGACGA 999442 Query 26007 GGGTCTCCACAGAGATTTTGCCTGCCTGCTCTAC 26040 ||| |||||| | || || |||||||| |||||| Sbjct 999443 GGGCCTCCACTGCGACTTCGCCTGCCTCCTCTAC 999476 >seq433 Length=30188 Score = 147 bits (162), Expect = 4e-30 Identities = 251/356 (71%), Gaps = 10/356 (3%) Strand=Plus/Plus Query 25690 TTCTACGGTTTCCAGATGGCCATCGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTG 25749 |||||||| |||||||| || ||||| || | ||||| ||| |||| || || || Sbjct 23905 TTCTACGGCTTCCAGATCGCGATCGAGAACATCCACTCGGAGATGTACTCCCTCCTCCTC 23964 Query 25750 ATGACGTACATTACAGACGTCGCCGAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATA 25809 ||| ||||| ||| | ||||| || || || || | ||| |||| | | Sbjct 23965 GAGACCTACATCCGCGACCCCCTCGAGAAGGACCGCCTCTTCCGCGCCGTCGACACCGTC 24024 Query 25810 CCCAGCATCAAGAGGAAGGCGCGGTGGGCCATGAAGTGGATCAACAG---CCAGAGCGCT 25866 ||| || || | ||||| |||||| || |||||| ||| || || ||| Sbjct 24025 CCCTGCGTCGCCCGCAAGGCCGCGTGGGCGCTGCGCTGGATC--CAGTCCCCCGA-CGCC 24081 Query 25867 ACGTTTGGCGAGCGGCTGGTAGCCTTTGC-TGCTGTGGAGGGCATCTTTTTCAGCGGTTC 25925 | || | |||||| || || ||||| || ||| || |||||| |||| ||| ||| || Sbjct 24082 TCCTTCGCCGAGCGCCTCGTCGCCTTCGCCTGC-GTCGAGGGCGTCTTCTTCTCCGGCTC 24140 Query 25926 GTT-TGCGGCCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCA 25984 || |||| ||||||||||||||||| || || ||||||||| || ||| |||| Sbjct 24141 CTTCTGCG-CCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCCGGCCTCACCTTCTCCA 24199 Query 25985 ACGAGCTCATCAGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTAC 26040 ||||||||||| | | |||||||| |||||| | || || |||||||| |||||| Sbjct 24200 ACGAGCTCATCTCCCGCGACGAGGGCCTCCACTGCGACTTCGCCTGCCTCCTCTAC 24255 >seq647 Length=24519 Score = 113 bits (124), Expect = 8e-20 Identities = 127/167 (76%), Gaps = 5/167 (3%) Strand=Plus/Minus Query 25875 CGAGCGGCTGGTAGCCTTTGC-TGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGG 25933 |||||| || || |||||||| ||| || |||||| |||| | | || || | | Sbjct 10115 CGAGCGCCTCGTCGCCTTTGCCTGC-GTCGAGGGCTTCTTCTCCGGC---TCCTGCTGAG 10060 Query 25934 CCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCA 25993 ||||||||||||||||| |||| || ||||| |||||| ||| |||||| |||||| Sbjct 10059 CCATCTTCTGGCTCAAGAAGAATGGCCTCATGCTCGGGCTCACCTTCTCCAACAAGCTCA 10000 Query 25994 TCAGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTAC 26040 || | | |||||||| |||||| | || || |||||||| |||||| Sbjct 9999 TCTCCCGCGACGAGGGCCTCCACTGCGACTTCGCCTGCCTCCTCTAC 9953 >seq2 Length=17334668 Score = 104 bits (114), Expect = 4e-17 Identities = 125/167 (75%), Gaps = 5/167 (3%) Strand=Plus/Plus Query 25875 CGAGCGGCTGGTAGCCTTTGC-TGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGG 25933 |||||| || || ||||| || ||| || |||||| |||| | | || || | | Sbjct 14396863 CGAGCGCCTCGTCGCCTTCGCCTGC-GTCGAGGGCTTCTTCTCCGGC---TCCTGCTGAG 14396918 Query 25934 CCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCA 25993 ||||||||||||||||| || || |||||||||||| ||| ||||||||||||| Sbjct 14396919 CCATCTTCTGGCTCAAGAAGCGTGGCCTCATGCCCGGGCTCACCTTCTCCAACGAGCTCA 14396978 Query 25994 TCAGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTAC 26040 || | | |||||||| |||||| | || || || ||||| |||||| Sbjct 14396979 TCTCCCGCGACGAGGGCCTCCACTGCGACTTCGCTTGCCTCCTCTAC 14397025 >seq336 Length=33712 Score = 98.7 bits (108), Expect = 2e-15 Identities = 124/167 (74%), Gaps = 5/167 (3%) Strand=Plus/Plus Query 25875 CGAGCGGCTGGTAGCCTTTGC-TGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGG 25933 |||||| | || ||||| || ||| || |||||| |||| | | || || | | Sbjct 18956 CGAGCGCTTCGTCGCCTTCGCCTGC-GTCGAGGGCTTCTTCTCCGGC---TCCTGCTGAG 19011 Query 25934 CCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCA 25993 ||||||||||||||||| || || |||||||||||| ||| |||||| |||||| Sbjct 19012 CCATCTTCTGGCTCAAGAAGCGTGGCCTCATGCCCGGGCTCACCTTCTCCAACAAGCTCA 19071 Query 25994 TCAGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTAC 26040 || | | |||||||| |||||| | || || |||||||| |||||| Sbjct 19072 TCTCCCGCGACGAGGGCCTCCACTGCGACTTCGCCTGCCTCCTCTAC 19118 >seq300 Length=35074 Score = 95.1 bits (104), Expect = 2e-14 Identities = 121/166 (73%), Gaps = 3/166 (2%) Strand=Plus/Minus Query 25875 CGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGC 25934 |||||| || || ||||| || || |||||| |||| | | || || | || Sbjct 28875 CGAGCGCCTCGTCGCCTTCGCCTACGTCGAGGGCTTCTTCTCCGGC---TCCTGCTGAGC 28819 Query 25935 CATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCAT 25994 |||||||||||||||| || || |||||||||||| ||| |||||| ||||||| Sbjct 28818 CATCTTCTGGCTCAAGAAGCGTGGCCTCATGCCCGGGCTCACCTTCTCCAACAAGCTCAT 28759 Query 25995 CAGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTAC 26040 | | | || ||||| |||||| | || || |||||||| |||||| Sbjct 28758 CTCCCGCGATGAGGGCCTCCACTGCGACTTCGCCTGCCTCCTCTAC 28713 >seq13 Length=11759267 Score = 89.7 bits (98), Expect = 1e-12 Identities = 122/167 (73%), Gaps = 5/167 (3%) Strand=Plus/Minus Query 25875 CGAGCGGCTGGTAGCCTTTGC-TGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGG 25933 |||||| || || ||||| || ||| || |||||| |||| | | || || | | Sbjct 9967896 CGAGCGCCTCGTCGCCTTCGCCTGC-GTCGAGGGCTTCTTCTCCGGC---TCCTGCTGAG 9967841 Query 25934 CCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCA 25993 ||||||||||||||||| || || |||||||||||| ||| |||||||||||| Sbjct 9967840 CCATCTTCTGGCTCAAGAAGCGTGGCCTCATGCCCGGGCTCACCTTCTCCAACGAGCTCG 9967781 Query 25994 TCAGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTAC 26040 || | ||| |||| |||||| | || || |||||| | |||||| Sbjct 9967780 TCTCCCACGACAAGGGCCTCCACTGCGACTTCGCCTGCGTCCTCTAC 9967734 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928808470557760