Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ananas_20comosus_20[refseq_20GCF_5F001540865.1_202016-03-14] 3,129 sequences; 382,055,938 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq433 129 7e-25 seq21 129 7e-25 seq13 114 2e-20 seq3 111 2e-19 seq22 109 7e-19 seq300 105 8e-18 seq2 105 8e-18 seq336 96.9 4e-15 seq647 93.3 5e-14 >seq433 Length=30188 Score = 129 bits (142), Expect = 7e-25 Identities = 119/151 (79%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 65067 CTCCTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTC 65126 |||||||||||||||||| | || || || || || ||||| ||||||||||||| || Sbjct 24081 CTCCTTCGCCGAGCGCCTCGTCGCCTTCGCCTGCGTCGAGGGCGTCTTCTTCTCCGGCTC 24140 Query 65127 ATTCTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAA 65186 |||||||| || | ||| | |||||||| || |||||||| ||||| |||||| || Sbjct 24141 CTTCTGCGCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCCGGCCTCACCTTCTCCAA 24200 Query 65187 TGAACTTATTTCCCGAGATGAGGGTCTCCAC 65217 || || || ||||| || ||||| |||||| Sbjct 24201 CGAGCTCATCTCCCGCGACGAGGGCCTCCAC 24231 >seq21 Length=10645290 Score = 129 bits (142), Expect = 7e-25 Identities = 119/151 (79%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 65067 CTCCTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTC 65126 |||||||||||||||||| | || || || || || ||||| ||||||||||||| || Sbjct 999302 CTCCTTCGCCGAGCGCCTCGTCGCCTTCGCCTGCGTCGAGGGCGTCTTCTTCTCCGGCTC 999361 Query 65127 ATTCTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAA 65186 |||||||| || | ||| | |||||||| || |||||||| ||||| |||||| || Sbjct 999362 CTTCTGCGCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCCGGCCTCACCTTCTCCAA 999421 Query 65187 TGAACTTATTTCCCGAGATGAGGGTCTCCAC 65217 || || || ||||| || ||||| |||||| Sbjct 999422 CGAGCTCATCTCCCGCGACGAGGGCCTCCAC 999452 >seq13 Length=11759267 Score = 114 bits (126), Expect = 2e-20 Identities = 117/152 (77%), Gaps = 3/152 (2%) Strand=Plus/Plus Query 65066 GCTCCTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGT 65125 ||||||||||||||||||| | || || || ||||| ||||| |||||||||||| | Sbjct 1164900 GCTCCTTCGCCGAGCGCCTCGTCGCCTTCGCCTGTGTCGAGGG---CTTCTTCTCCGGCT 1164956 Query 65126 CATTCTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAA 65185 | | ||| || || | ||| | |||||||| || |||||||| || || |||||| | Sbjct 1164957 CCTGCTGAGCCATCTTCTGGCTCAAGAAGCGTGGCCTCATGCCCGGGCTCACCTTCTCCA 1165016 Query 65186 ATGAACTTATTTCCCGAGATGAGGGTCTCCAC 65217 | | ||||| ||||| || ||||| |||||| Sbjct 1165017 ACAAGCTTATCTCCCGCGACGAGGGCCTCCAC 1165048 Score = 93.3 bits (102), Expect = 5e-14 Identities = 112/152 (74%), Gaps = 3/152 (2%) Strand=Plus/Minus Query 65066 GCTCCTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGT 65125 |||| |||||||||||||| | || || || || || ||||| |||||||||||| | Sbjct 9967906 GCTCTTTCGCCGAGCGCCTCGTCGCCTTCGCCTGCGTCGAGGG---CTTCTTCTCCGGCT 9967850 Query 65126 CATTCTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAA 65185 | | ||| || || | ||| | |||||||| || |||||||| || || |||||| | Sbjct 9967849 CCTGCTGAGCCATCTTCTGGCTCAAGAAGCGTGGCCTCATGCCCGGGCTCACCTTCTCCA 9967790 Query 65186 ATGAACTTATTTCCCGAGATGAGGGTCTCCAC 65217 | || || | |||| || |||| |||||| Sbjct 9967789 ACGAGCTCGTCTCCCACGACAAGGGCCTCCAC 9967758 >seq3 Length=16781886 Score = 111 bits (122), Expect = 2e-19 Identities = 116/152 (76%), Gaps = 3/152 (2%) Strand=Plus/Minus Query 65066 GCTCCTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGT 65125 ||||||||||||||||||| | || || || ||||| || || |||||||||||| | Sbjct 8692878 GCTCCTTCGCCGAGCGCCTCGTCGCCTTCGCCTGTGTCGACGG---CTTCTTCTCCGGCT 8692822 Query 65126 CATTCTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAA 65185 | | ||| || || | ||| | |||||||| || |||||||| || || |||||| | Sbjct 8692821 CCTGCTGAGCCATCTTCTGGCTCAAGAAGCGTGGCCTCATGCCCGGGCTCACCTTCTCCA 8692762 Query 65186 ATGAACTTATTTCCCGAGATGAGGGTCTCCAC 65217 | | ||||| ||||| || ||||| |||||| Sbjct 8692761 ACAAGCTTATCTCCCGCGACGAGGGCCTCCAC 8692730 >seq22 Length=10398566 Score = 109 bits (120), Expect = 7e-19 Identities = 222/327 (68%), Gaps = 16/327 (5%) Strand=Plus/Plus Query 175315 CCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTC 175374 ||||| || || ||||| | || ||| || || || |||||| || ||||||||| Sbjct 1624895 CCAGGAACTGGGAAGACTTTGCTAGCCAAGGCAATTGCAGGTGAAGCAGGGGTCCCATTC 1624954 Query 175375 AT--CCAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGG 175432 | | | | || | | | ||||| ||||||||||| ||||| |||||| | | | Sbjct 1624955 TTTTCTATT--TCGGGATCTGAATTTGTAGAGATGTTTGTGGGTGTCGGTGCCTCACGTG 1625012 Query 175433 TTCGCGATCTCTTTGAAATCGCCCGCGAAAATCAACCATGTATTGTCTTCATTGATGAGA 175492 | ||||| || || | | || || ||| || || || || || ||||||||| Sbjct 1625013 TCCGCGACCTTTTCAAGAAGGCAAAAGAGAATGCCCCTTGCATAGTGTTTGTTGATGAGA 1625072 Query 175493 TTGATGCGGTGGGCAAGCAACG-----CAGCGCT-GGTGGTATGCCAGCAAATGACGAGA 175546 | ||||| || || | |||| | ||| | | ||||| || ||||| |||| Sbjct 1625073 TCGATGCAGTCGGGAGGCAAAGAGGTACAGGGATCGGTGG------AGGGAATGATGAGA 1625126 Query 175547 GAGAACAAACAATTAATCAACTACTCACCGAGATGGATGGCTTTGACAATGAGACTGGCA 175606 ||||||| ||| | ||||| || | || ||||||||||| || || | || || | Sbjct 1625127 GAGAACAGACACTAAATCAGCTTTTGACTGAGATGGATGGGTTCGAAGGAAACACCGGTA 1625186 Query 175607 TTGTGGTTATTGCGGCCACTAATCGCG 175633 || | || ||||| ||||||||||||| Sbjct 1625187 TTATTGTGATTGCTGCCACTAATCGCG 1625213 Score = 95.1 bits (104), Expect = 1e-14 Identities = 272/414 (66%), Gaps = 12/414 (3%) Strand=Plus/Minus Query 175276 GGTGCCAAGATCCCCCGAGGCGCCCTTCTCGCGGGTAAGCCAGGTACGGGAAAGACCCTC 175335 || |||||||||||| ||| ||| |||| || || || || || |||||||| Sbjct 8185353 GGCGCCAAGATCCCCAAGGGCTGCCTCCTCGTCGGCCCCCCCGGCACCGGCAAGACCCTG 8185294 Query 175336 CTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTCATCCAGTGCTCTGCCGCAAAC 175395 |||||||| ||| |||| || || | ||||| ||| || ||| | ||| | | Sbjct 8185293 CTCGCCCGCGCCGTCGCCGGCGAGGCCGGCGTCCCCTTCTTCTCCTGCGCCGCCTCCGAA 8185234 Query 175396 TTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCC 175455 || || ||| | || || || || || ||| | || || || ||||| || | ||| Sbjct 8185233 TTCGTCGAGCTCTTCGTCGGCGTCGGCGCCTCCCGCGTCCGGGACCTCTTCGAGAAGGCC 8185174 Query 175456 CGCGAAAATCAA----CCATGTATTGTCTTCATTGATGAGATTGATGCGGTGGGCAAGCA 175511 || ||| || || || |||||||| || ||||| || || || ||| || Sbjct 8185173 ----AAGTCCAAGGCCCCCTGCATCGTCTTCATCGACGAGATCGACGCCGTCGGCCGCCA 8185118 Query 175512 ACGCAGCGCTGGTGGTATGC--CAGCAAATGACGAGAGAGAACAAACAATTAATCAACTA 175569 ||| | || || | | || | || || |||||| | || || || || || || || Sbjct 8185117 GCGCGGGGC-GGGGCTCGGCGGCGGC-AACGACGAGCGCGAGCAGACCATCAACCAGCTC 8185060 Query 175570 CTCACCGAGATGGATGGCTTTGACAATGAGACTGGCATTGTGGTTATTGCGGCCACTAAT 175629 ||||| |||||||||||||| | | || | | ||| | || ||||| ||| Sbjct 8185059 CTCACTGAGATGGATGGCTTCTCGGGGAACAGCGGGGTCATCGTTTTGGCCGCCACCAAT 8185000 Query 175630 CGCGTGGATATCCTTGATGACGCCCTCCTTCGCCCGGGTCGTTTTGATCGCAAG 175683 ||| || | || ||| |||||| | |||||||| || || |||||| || Sbjct 8184999 CGCCCCGACGTGCTCGATTCCGCCCTGTTGCGCCCGGGCCGATTCGATCGCCAG 8184946 >seq300 Length=35074 Score = 105 bits (116), Expect = 8e-18 Identities = 115/152 (76%), Gaps = 3/152 (2%) Strand=Plus/Minus Query 65066 GCTCCTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGT 65125 ||||||||||||||||||| | || || || | || ||||| |||||||||||| | Sbjct 28885 GCTCCTTCGCCGAGCGCCTCGTCGCCTTCGCCTACGTCGAGGG---CTTCTTCTCCGGCT 28829 Query 65126 CATTCTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAA 65185 | | ||| || || | ||| | |||||||| || |||||||| || || |||||| | Sbjct 28828 CCTGCTGAGCCATCTTCTGGCTCAAGAAGCGTGGCCTCATGCCCGGGCTCACCTTCTCCA 28769 Query 65186 ATGAACTTATTTCCCGAGATGAGGGTCTCCAC 65217 | | || || ||||| |||||||| |||||| Sbjct 28768 ACAAGCTCATCTCCCGCGATGAGGGCCTCCAC 28737 >seq2 Length=17334668 Score = 105 bits (116), Expect = 8e-18 Identities = 115/152 (76%), Gaps = 3/152 (2%) Strand=Plus/Plus Query 65066 GCTCCTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGT 65125 |||| |||||||||||||| | || || || || || ||||| |||||||||||| | Sbjct 14396853 GCTCTTTCGCCGAGCGCCTCGTCGCCTTCGCCTGCGTCGAGGG---CTTCTTCTCCGGCT 14396909 Query 65126 CATTCTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAA 65185 | | ||| || || | ||| | |||||||| || |||||||| || || |||||| | Sbjct 14396910 CCTGCTGAGCCATCTTCTGGCTCAAGAAGCGTGGCCTCATGCCCGGGCTCACCTTCTCCA 14396969 Query 65186 ATGAACTTATTTCCCGAGATGAGGGTCTCCAC 65217 | || || || ||||| || ||||| |||||| Sbjct 14396970 ACGAGCTCATCTCCCGCGACGAGGGCCTCCAC 14397001 >seq336 Length=33712 Score = 96.9 bits (106), Expect = 4e-15 Identities = 113/152 (74%), Gaps = 3/152 (2%) Strand=Plus/Plus Query 65066 GCTCCTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGT 65125 ||| ||||||||||||| | | || || || || || ||||| |||||||||||| | Sbjct 18946 GCTTCTTCGCCGAGCGCTTCGTCGCCTTCGCCTGCGTCGAGGG---CTTCTTCTCCGGCT 19002 Query 65126 CATTCTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAA 65185 | | ||| || || | ||| | |||||||| || |||||||| || || |||||| | Sbjct 19003 CCTGCTGAGCCATCTTCTGGCTCAAGAAGCGTGGCCTCATGCCCGGGCTCACCTTCTCCA 19062 Query 65186 ATGAACTTATTTCCCGAGATGAGGGTCTCCAC 65217 | | || || ||||| || ||||| |||||| Sbjct 19063 ACAAGCTCATCTCCCGCGACGAGGGCCTCCAC 19094 >seq647 Length=24519 Score = 93.3 bits (102), Expect = 5e-14 Identities = 112/152 (74%), Gaps = 3/152 (2%) Strand=Plus/Minus Query 65066 GCTCCTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGT 65125 |||| |||||||||||||| | || ||||| || || ||||| |||||||||||| | Sbjct 10125 GCTCTTTCGCCGAGCGCCTCGTCGCCTTTGCCTGCGTCGAGGG---CTTCTTCTCCGGCT 10069 Query 65126 CATTCTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAA 65185 | | ||| || || | ||| | |||||| || ||||||| || || |||||| | Sbjct 10068 CCTGCTGAGCCATCTTCTGGCTCAAGAAGAATGGCCTCATGCTCGGGCTCACCTTCTCCA 10009 Query 65186 ATGAACTTATTTCCCGAGATGAGGGTCTCCAC 65217 | | || || ||||| || ||||| |||||| Sbjct 10008 ACAAGCTCATCTCCCGCGACGAGGGCCTCCAC 9977 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596546266671520